Wall clock time and date at job start Tue Mar 31 2020 15:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47306 * 2 1 4 4 H 1.09000 * 109.47542 * 185.20599 * 3 2 1 5 5 C 1.50694 * 109.47486 * 305.20713 * 3 2 1 6 6 H 1.08008 * 120.00264 * 119.99297 * 5 3 2 7 7 C 1.37876 * 120.00193 * 300.27587 * 5 3 2 8 8 N 1.31518 * 120.00522 * 179.72459 * 7 5 3 9 9 Si 1.86801 * 119.99777 * 359.71925 * 7 5 3 10 10 H 1.48504 * 109.47294 * 89.99988 * 9 7 5 11 11 H 1.48498 * 109.47191 * 210.00355 * 9 7 5 12 12 H 1.48504 * 109.46950 * 330.00451 * 9 7 5 13 13 N 1.46905 * 109.46901 * 65.20525 * 3 2 1 14 14 C 1.46903 * 110.99812 * 86.56025 * 13 3 2 15 15 H 1.08999 * 110.44549 * 321.20360 * 14 13 3 16 16 C 1.54668 * 110.49379 * 83.77167 * 14 13 3 17 17 C 1.55921 * 104.47931 * 119.57515 * 16 14 13 18 18 H 1.09003 * 115.73658 * 159.85564 * 17 16 14 19 19 C 1.56903 * 100.76891 * 33.90553 * 17 16 14 20 20 C 1.56076 * 110.49971 * 198.62719 * 14 13 3 21 21 H 1.09000 * 116.36570 * 78.04173 * 20 14 13 22 22 C 1.59067 * 103.24092 * 308.23616 * 20 14 13 23 23 N 1.47786 * 105.01680 * 289.18153 * 22 20 14 24 24 C 1.34779 * 126.65726 * 181.27730 * 23 22 20 25 25 O 1.21514 * 119.99545 * 179.97438 * 24 23 22 26 26 O 1.34633 * 120.00227 * 359.97438 * 24 23 22 27 27 C 1.45195 * 117.00020 * 180.02562 * 26 24 23 28 28 C 1.53001 * 109.47359 * 59.99751 * 27 26 24 29 29 C 1.53001 * 109.47054 * 179.97438 * 27 26 24 30 30 C 1.52997 * 109.47151 * 299.99565 * 27 26 24 31 31 H 1.09004 * 109.46823 * 303.09818 * 1 2 3 32 32 H 1.09003 * 109.47545 * 63.09817 * 1 2 3 33 33 H 1.09004 * 109.47254 * 183.09959 * 1 2 3 34 34 H 1.09010 * 109.46820 * 240.00503 * 2 1 3 35 35 H 1.08992 * 109.47594 * 120.00677 * 2 1 3 36 36 H 0.96996 * 119.99803 * 180.02562 * 8 7 5 37 37 H 1.00903 * 110.99687 * 322.60834 * 13 3 2 38 38 H 1.08997 * 110.43213 * 238.31857 * 16 14 13 39 39 H 1.08994 * 110.43442 * 0.82688 * 16 14 13 40 40 H 1.09000 * 112.19868 * 62.12455 * 19 17 16 41 41 H 1.09005 * 112.19980 * 189.10568 * 19 17 16 42 42 H 1.08998 * 110.09324 * 170.47069 * 22 20 14 43 43 H 1.09000 * 110.70731 * 48.20226 * 22 20 14 44 44 H 1.09001 * 109.46976 * 59.99735 * 28 27 26 45 45 H 1.08998 * 109.47268 * 180.02562 * 28 27 26 46 46 H 1.09001 * 109.46918 * 300.00032 * 28 27 26 47 47 H 1.09001 * 109.47036 * 59.99617 * 29 27 26 48 48 H 1.08998 * 109.47098 * 179.97438 * 29 27 26 49 49 H 1.09000 * 109.47686 * 299.99992 * 29 27 26 50 50 H 1.09001 * 109.47031 * 60.00026 * 30 27 26 51 51 H 1.08998 * 109.47197 * 180.02562 * 30 27 26 52 52 H 1.09001 * 109.46780 * 300.00286 * 30 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0932 5 6 1.4352 2.1892 -1.1608 6 1 0.8261 3.0631 -0.9825 7 6 1.6546 1.7534 -2.4504 8 7 1.1223 2.4019 -3.4633 9 14 2.7080 0.2420 -2.7590 10 1 1.8481 -0.9688 -2.7608 11 1 3.3847 0.3704 -4.0745 12 1 3.7285 0.1226 -1.6868 13 7 1.6556 2.0977 1.2574 14 6 2.6528 1.8489 2.3070 15 1 3.0240 0.8260 2.2447 16 6 3.8207 2.8566 2.1941 17 6 3.8096 3.6201 3.5536 18 1 4.7377 4.1259 3.8200 19 6 3.3437 2.4804 4.5261 20 6 2.0427 2.1241 3.7169 21 1 1.3927 1.3490 4.1228 22 6 1.4280 3.5838 3.5693 23 7 2.5964 4.4852 3.4907 24 6 2.5707 5.8285 3.3834 25 8 3.6112 6.4536 3.3280 26 8 1.3921 6.4777 3.3376 27 6 1.4404 7.9242 3.2211 28 6 2.1715 8.3080 1.9331 29 6 0.0156 8.4806 3.1834 30 6 2.1847 8.5081 4.4235 31 1 -0.3633 0.5612 0.8610 32 1 -0.3634 0.4650 -0.9164 33 1 -0.3634 -1.0262 0.0556 34 1 1.8932 -0.5138 -0.8901 35 1 1.8933 -0.5139 0.8898 36 1 1.2764 2.0951 -4.3704 37 1 0.7375 1.8017 1.5534 38 1 4.7659 2.3304 2.0610 39 1 3.6490 3.5472 1.3685 40 1 4.0489 1.6497 4.5549 41 1 3.1182 2.8569 5.5238 42 1 0.8225 3.8252 4.4429 43 1 0.8301 3.6601 2.6611 44 1 1.6412 7.8920 1.0764 45 1 2.2081 9.3939 1.8459 46 1 3.1865 7.9116 1.9595 47 1 -0.5056 8.2071 4.1008 48 1 0.0519 9.5665 3.0964 49 1 -0.5145 8.0646 2.3266 50 1 3.1997 8.1116 4.4499 51 1 2.2206 9.5940 4.3363 52 1 1.6638 8.2346 5.3410 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255151910.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:55 Heat of formation + Delta-G solvation = -72.139794 kcal Electronic energy + Delta-G solvation = -30071.687121 eV Core-core repulsion = 26264.278838 eV Total energy + Delta-G solvation = -3807.408283 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.04333 -40.89681 -38.25993 -37.53466 -35.19928 -34.41896 -33.44624 -31.84770 -30.55456 -28.92485 -28.36579 -28.28716 -27.14286 -25.62139 -25.00094 -23.31642 -21.70364 -21.22235 -20.72948 -19.62427 -18.79348 -18.46990 -17.65121 -17.36532 -17.06123 -16.90493 -16.30991 -15.78250 -15.51297 -15.33220 -14.92457 -14.84464 -14.68415 -14.50182 -14.33572 -13.91290 -13.57668 -13.33464 -13.25620 -13.02897 -12.90278 -12.85254 -12.82589 -12.74562 -12.58257 -12.45628 -12.41963 -12.35792 -12.22852 -12.06413 -12.02369 -11.88322 -11.55597 -11.40410 -11.35701 -11.19033 -11.05880 -10.99639 -10.66155 -9.55703 -8.90142 -8.23218 -6.21932 1.15630 1.27820 1.33374 1.42101 1.84395 2.33332 2.94552 3.12440 3.30635 3.54239 3.57806 3.76605 3.78539 3.81591 3.96059 4.13835 4.15501 4.30512 4.34825 4.40070 4.48880 4.51236 4.59453 4.61059 4.64520 4.67451 4.75848 4.81776 4.83493 4.87236 4.87788 4.93546 5.01137 5.04491 5.09972 5.12134 5.13839 5.19914 5.22933 5.28206 5.31452 5.34622 5.38145 5.42072 5.54921 5.60806 5.76823 6.12393 6.57730 6.77186 6.83156 6.90054 7.34091 7.41613 8.94708 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013542 B = 0.004029 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.209809 B = 6948.734299 C = 7952.318787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.154 4.154 3 C 0.195 3.805 4 H 0.018 0.982 5 C -0.479 4.479 6 H 0.029 0.971 7 C 0.010 3.990 8 N -0.955 5.955 9 Si 0.943 3.057 10 H -0.265 1.265 11 H -0.306 1.306 12 H -0.252 1.252 13 N -0.674 5.674 14 C 0.079 3.921 15 H 0.056 0.944 16 C -0.130 4.130 17 C 0.142 3.858 18 H 0.115 0.885 19 C -0.112 4.112 20 C -0.092 4.092 21 H 0.150 0.850 22 C 0.111 3.889 23 N -0.598 5.598 24 C 0.660 3.340 25 O -0.602 6.602 26 O -0.370 6.370 27 C 0.123 3.877 28 C -0.180 4.180 29 C -0.134 4.134 30 C -0.172 4.172 31 H 0.062 0.938 32 H 0.033 0.967 33 H 0.057 0.943 34 H 0.032 0.968 35 H 0.070 0.930 36 H 0.261 0.739 37 H 0.339 0.661 38 H 0.081 0.919 39 H 0.036 0.964 40 H 0.114 0.886 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.075 0.925 48 H 0.105 0.895 49 H 0.057 0.943 50 H 0.061 0.939 51 H 0.092 0.908 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.979 2.027 21.531 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.193 4.193 3 C 0.085 3.915 4 H 0.036 0.964 5 C -0.518 4.518 6 H 0.047 0.953 7 C -0.185 4.185 8 N -0.597 5.597 9 Si 0.771 3.229 10 H -0.191 1.191 11 H -0.234 1.234 12 H -0.176 1.176 13 N -0.306 5.306 14 C -0.031 4.031 15 H 0.074 0.926 16 C -0.169 4.169 17 C 0.041 3.959 18 H 0.133 0.867 19 C -0.150 4.150 20 C -0.111 4.111 21 H 0.168 0.832 22 C -0.012 4.012 23 N -0.339 5.339 24 C 0.416 3.584 25 O -0.495 6.495 26 O -0.285 6.285 27 C 0.087 3.913 28 C -0.237 4.237 29 C -0.191 4.191 30 C -0.229 4.229 31 H 0.081 0.919 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.160 0.840 38 H 0.099 0.901 39 H 0.055 0.945 40 H 0.132 0.868 41 H 0.112 0.888 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.077 0.923 47 H 0.094 0.906 48 H 0.124 0.876 49 H 0.076 0.924 50 H 0.080 0.920 51 H 0.111 0.889 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.473 3.017 21.136 21.401 hybrid contribution 0.293 -1.029 -1.374 1.741 sum 1.766 1.988 19.763 19.941 Atomic orbital electron populations 1.21521 0.94977 1.00402 1.01688 1.22397 0.97930 0.99155 0.99852 1.19384 0.94424 0.89216 0.88501 0.96399 1.21123 1.29488 1.10984 0.90217 0.95269 1.25689 0.97058 0.99827 0.95972 1.70056 1.47578 1.42728 0.99318 0.85951 0.79864 0.80499 0.76552 1.19108 1.23433 1.17647 1.60613 1.04920 1.62429 1.02656 1.22710 0.92680 0.96663 0.91074 0.92628 1.23094 0.98840 0.98146 0.96863 1.23734 0.87649 0.88641 0.95893 0.86747 1.23808 0.96788 0.97048 0.97351 1.24712 0.97493 0.95124 0.93724 0.83196 1.23056 0.87349 0.89014 1.01742 1.47864 1.10866 1.01368 1.73771 1.17754 0.82221 0.82284 0.76138 1.90835 1.33985 1.66390 1.58291 1.86327 1.31650 1.24413 1.86124 1.22393 0.98736 0.73962 0.96224 1.22470 1.01399 1.03507 0.96371 1.21870 0.91719 1.02119 1.03426 1.22416 1.01310 1.02662 0.96558 0.91882 0.94757 0.92406 0.94925 0.91129 0.92992 0.84028 0.90089 0.94457 0.86814 0.88785 0.90501 0.91504 0.93661 0.88646 0.92315 0.90630 0.87645 0.92361 0.92042 0.88913 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.64 9.39 71.98 0.68 -3.96 16 2 C -0.15 -5.88 5.21 30.59 0.16 -5.72 16 3 C 0.19 8.57 1.78 44.17 0.08 8.65 16 4 H 0.02 0.85 6.69 -2.39 -0.02 0.83 16 5 C -0.48 -27.04 7.99 25.60 0.20 -26.84 16 6 H 0.03 1.89 8.06 -2.91 -0.02 1.87 16 7 C 0.01 0.61 5.39 84.65 0.46 1.07 16 8 N -0.95 -60.77 13.96 21.45 0.30 -60.47 16 9 Si 0.94 45.31 24.32 68.60 1.67 46.97 16 10 H -0.27 -12.00 6.91 99.48 0.69 -11.32 16 11 H -0.31 -14.99 7.11 99.48 0.71 -14.29 16 12 H -0.25 -11.23 6.54 99.48 0.65 -10.58 16 13 N -0.67 -24.59 4.53 -464.97 -2.11 -26.69 16 14 C 0.08 2.18 2.68 46.55 0.12 2.30 16 15 H 0.06 1.44 7.31 -2.39 -0.02 1.42 16 16 C -0.13 -3.98 5.82 32.17 0.19 -3.79 16 17 C 0.14 3.63 5.03 46.86 0.24 3.87 16 18 H 0.11 2.92 8.04 -2.39 -0.02 2.90 16 19 C -0.11 -1.83 6.63 33.48 0.22 -1.61 16 20 C -0.09 -1.77 5.09 -6.03 -0.03 -1.80 16 21 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 22 C 0.11 2.84 6.25 88.32 0.55 3.39 16 23 N -0.60 -18.09 2.94 -893.09 -2.62 -20.72 16 24 C 0.66 23.11 7.97 129.79 1.03 24.14 16 25 O -0.60 -23.18 12.20 19.80 0.24 -22.94 16 26 O -0.37 -12.08 9.55 -55.43 -0.53 -12.61 16 27 C 0.12 3.25 1.13 -10.79 -0.01 3.24 16 28 C -0.18 -5.20 8.37 71.98 0.60 -4.59 16 29 C -0.13 -2.63 8.85 71.98 0.64 -1.99 16 30 C -0.17 -3.93 8.37 71.98 0.60 -3.33 16 31 H 0.06 2.00 6.33 -2.39 -0.02 1.98 16 32 H 0.03 1.51 7.15 -2.39 -0.02 1.49 16 33 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.03 1.35 3.40 -2.38 -0.01 1.34 16 35 H 0.07 2.18 7.49 -2.39 -0.02 2.17 16 36 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 37 H 0.34 11.29 5.97 -89.69 -0.54 10.76 16 38 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.04 1.53 7.96 -2.39 -0.02 1.51 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.07 2.14 6.58 -2.39 -0.02 2.13 16 44 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.06 2.04 5.88 -2.39 -0.01 2.03 16 47 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 50 H 0.06 1.75 5.88 -2.39 -0.01 1.74 16 51 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 52 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -74.94 384.90 2.97 -71.97 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.29 Total: 31.46 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 5.73 Total: -6.98 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -4.43 Total: -107.88 kcal Atomic # 8 Polarization: -35.26 SS G_CDS: -0.29 Total: -35.54 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 1.67 Total: 46.97 kcal Total: -74.94 2.97 -71.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255151910.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.172 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds