Wall clock time and date at job start Tue Mar 31 2020 15:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 H 1.08996 * 109.47454 * 305.81746 * 3 2 1 5 5 C 1.50699 * 109.47211 * 185.80925 * 3 2 1 6 6 H 1.07997 * 120.00131 * 240.22006 * 5 3 2 7 7 C 1.37875 * 119.99951 * 60.22453 * 5 3 2 8 8 N 1.31510 * 120.00361 * 197.46393 * 7 5 3 9 9 Si 1.86805 * 119.99759 * 17.46791 * 7 5 3 10 10 H 1.48499 * 109.47247 * 92.25585 * 9 7 5 11 11 H 1.48500 * 109.47118 * 212.25358 * 9 7 5 12 12 H 1.48499 * 109.47126 * 332.25244 * 9 7 5 13 13 N 1.46900 * 109.46885 * 65.81244 * 3 2 1 14 14 C 1.46898 * 111.00409 * 262.47209 * 13 3 2 15 15 H 1.09008 * 112.81664 * 16.63245 * 14 13 3 16 16 C 1.53727 * 113.57567 * 245.56576 * 14 13 3 17 17 C 1.53598 * 87.29986 * 219.90034 * 16 14 13 18 18 H 1.08998 * 116.03902 * 266.93748 * 17 16 14 19 19 C 1.53882 * 113.70997 * 130.09014 * 17 16 14 20 20 N 1.46737 * 106.77555 * 294.48942 * 19 17 16 21 21 C 1.34785 * 125.32536 * 161.96879 * 20 19 17 22 22 O 1.21509 * 119.99754 * 179.97438 * 21 20 19 23 23 O 1.34639 * 119.99920 * 359.97148 * 21 20 19 24 24 C 1.45196 * 116.99549 * 180.02562 * 23 21 20 25 25 C 1.52998 * 109.47207 * 60.00427 * 24 23 21 26 26 C 1.53005 * 109.46974 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47281 * 300.00134 * 24 23 21 28 28 C 1.46634 * 109.35005 * 341.94417 * 20 19 17 29 29 C 1.53794 * 113.58118 * 147.70883 * 14 13 3 30 30 H 1.08994 * 116.05206 * 258.09981 * 29 14 13 31 31 H 1.08997 * 109.46447 * 299.40933 * 1 2 3 32 32 H 1.09005 * 109.47011 * 59.40719 * 1 2 3 33 33 H 1.08994 * 109.46532 * 179.40635 * 1 2 3 34 34 H 1.09002 * 109.47458 * 240.00611 * 2 1 3 35 35 H 1.08995 * 109.47537 * 119.99916 * 2 1 3 36 36 H 0.96995 * 120.00255 * 179.97438 * 8 7 5 37 37 H 1.00902 * 111.00473 * 138.51744 * 13 3 2 38 38 H 1.09003 * 113.57710 * 334.50508 * 16 14 13 39 39 H 1.08991 * 113.58173 * 105.22014 * 16 14 13 40 40 H 1.09008 * 109.99963 * 53.81670 * 19 17 16 41 41 H 1.08998 * 109.99995 * 175.15642 * 19 17 16 42 42 H 1.08995 * 109.47506 * 59.99796 * 25 24 23 43 43 H 1.09004 * 109.46815 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.46916 * 299.99250 * 25 24 23 45 45 H 1.09002 * 109.47180 * 59.99411 * 26 24 23 46 46 H 1.08999 * 109.47481 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.46618 * 300.00250 * 26 24 23 48 48 H 1.08989 * 109.47109 * 60.00406 * 27 24 23 49 49 H 1.08999 * 109.46884 * 180.02562 * 27 24 23 50 50 H 1.09001 * 109.47062 * 299.99808 * 27 24 23 51 51 H 1.09004 * 109.76217 * 120.82646 * 28 20 19 52 52 H 1.09004 * 109.76949 * 241.55023 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5942 1.9856 -0.8333 5 6 3.5402 1.4449 -0.1438 6 1 4.1559 1.8827 0.6279 7 6 4.1265 0.8884 -1.2607 8 7 5.4039 0.5759 -1.2462 9 14 3.1065 0.5783 -2.7946 10 1 3.1988 1.7543 -3.6966 11 1 3.6209 -0.6252 -3.4962 12 1 1.6889 0.3591 -2.4105 13 7 1.6683 2.0933 1.2634 14 6 0.4453 2.8915 1.1046 15 1 -0.1120 2.6361 0.2032 16 6 0.6697 4.4020 1.2815 17 6 -0.6662 4.4381 2.0387 18 1 -1.5484 4.6692 1.4419 19 6 -0.5892 5.1605 3.3952 20 7 0.2923 4.3595 4.2522 21 6 0.8944 4.7967 5.3761 22 8 1.6070 4.0476 6.0144 23 8 0.7061 6.0636 5.7914 24 6 1.3861 6.4657 7.0096 25 6 2.8972 6.3142 6.8240 26 6 1.0539 7.9265 7.3207 27 6 0.9233 5.5801 8.1682 28 6 0.4153 3.0087 3.6951 29 6 -0.4246 2.9430 2.3718 30 1 -1.3008 2.2948 2.3776 31 1 -0.3632 0.5046 0.8952 32 1 -0.3633 0.5230 -0.8847 33 1 -0.3632 -1.0276 -0.0106 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 5.8163 0.1841 -2.0318 37 1 2.4260 2.6589 1.6156 38 1 1.5306 4.6449 1.9043 39 1 0.6559 4.9575 0.3439 40 1 -0.1731 6.1593 3.2626 41 1 -1.5823 5.2261 3.8396 42 1 3.2270 6.9451 5.9986 43 1 3.4077 6.6166 7.7384 44 1 3.1336 5.2734 6.6027 45 1 -0.0227 8.0341 7.4529 46 1 1.5648 8.2286 8.2349 47 1 1.3834 8.5577 6.4952 48 1 1.1596 4.5394 7.9469 49 1 1.4335 5.8824 9.0828 50 1 -0.1533 5.6881 8.3005 51 1 1.4614 2.7939 3.4767 52 1 0.0303 2.2794 4.4079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255157086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:19 Heat of formation + Delta-G solvation = -48.715576 kcal Electronic energy + Delta-G solvation = -29368.484051 eV Core-core repulsion = 25562.091518 eV Total energy + Delta-G solvation = -3806.392532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.13538 -40.08877 -37.12752 -36.06272 -34.49408 -33.69922 -32.05607 -30.71216 -28.98007 -27.59612 -27.51204 -27.50216 -26.30490 -24.00018 -22.64767 -21.97667 -21.24450 -19.75992 -19.28711 -18.81708 -17.81242 -16.75701 -16.63904 -16.54506 -15.77145 -15.20679 -15.09683 -14.49183 -14.31634 -13.97206 -13.91820 -13.53251 -13.21470 -13.12476 -12.79791 -12.70136 -12.66747 -12.35015 -12.28046 -12.13709 -12.07678 -12.03550 -11.91851 -11.70509 -11.56239 -11.41417 -11.33841 -11.03494 -10.85405 -10.69435 -10.45557 -10.37433 -10.10263 -10.07047 -10.00940 -9.75391 -9.26077 -9.14411 -8.64639 -8.41752 -7.48284 -6.14983 -4.08997 2.08624 2.87963 3.25635 3.35842 3.38252 3.87344 4.28034 4.38923 4.51711 4.56400 4.59764 4.66974 4.74678 4.90461 5.11706 5.14991 5.27545 5.33124 5.36583 5.42218 5.42682 5.45204 5.50851 5.58130 5.60782 5.71558 5.76516 5.80001 5.80050 5.90562 6.04403 6.05161 6.08300 6.14639 6.20200 6.22412 6.25344 6.29812 6.38875 6.46235 6.52622 6.68438 6.76186 7.01189 7.05197 7.44876 7.51764 7.64427 7.98697 8.31042 8.37321 8.58736 8.94535 9.51558 10.97947 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.003022 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.005552 B = 9262.582664 C = 9880.017970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C 0.194 3.806 4 H 0.002 0.998 5 C -0.535 4.535 6 H 0.074 0.926 7 C 0.079 3.921 8 N -0.887 5.887 9 Si 0.862 3.138 10 H -0.283 1.283 11 H -0.288 1.288 12 H -0.248 1.248 13 N -0.667 5.667 14 C 0.084 3.916 15 H 0.095 0.905 16 C -0.157 4.157 17 C -0.128 4.128 18 H 0.113 0.887 19 C 0.116 3.884 20 N -0.598 5.598 21 C 0.666 3.334 22 O -0.565 6.565 23 O -0.364 6.364 24 C 0.136 3.864 25 C -0.184 4.184 26 C -0.139 4.139 27 C -0.183 4.183 28 C 0.144 3.856 29 C -0.107 4.107 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.264 0.736 37 H 0.343 0.657 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.090 0.910 45 H 0.065 0.935 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.057 0.943 51 H 0.091 0.909 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.219 12.724 12.712 22.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.149 4.149 3 C 0.086 3.914 4 H 0.019 0.981 5 C -0.572 4.572 6 H 0.092 0.908 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.689 3.311 10 H -0.210 1.210 11 H -0.214 1.214 12 H -0.172 1.172 13 N -0.297 5.297 14 C -0.028 4.028 15 H 0.113 0.887 16 C -0.196 4.196 17 C -0.147 4.147 18 H 0.131 0.869 19 C -0.007 4.007 20 N -0.339 5.339 21 C 0.421 3.579 22 O -0.454 6.454 23 O -0.279 6.279 24 C 0.099 3.901 25 C -0.242 4.242 26 C -0.197 4.197 27 C -0.240 4.240 28 C 0.024 3.976 29 C -0.128 4.128 30 H 0.115 0.885 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.163 0.837 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.108 0.892 45 H 0.084 0.916 46 H 0.098 0.902 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.109 0.891 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.067 11.913 13.184 22.663 hybrid contribution -0.037 0.589 -1.412 1.530 sum -14.104 12.502 11.772 22.222 Atomic orbital electron populations 1.21873 0.98668 0.99596 1.00511 1.21902 0.92699 0.99410 1.00908 1.19464 0.95477 0.90720 0.85776 0.98066 1.21180 0.89513 1.40055 1.06486 0.90756 1.24888 0.94740 0.94064 0.98732 1.70007 1.12051 1.40919 1.29426 0.87261 0.82427 0.77735 0.83681 1.20987 1.21393 1.17238 1.60447 1.05310 1.33187 1.30748 1.22991 0.93824 0.90226 0.95731 0.88706 1.23624 0.96525 0.99249 1.00182 1.23443 0.99569 0.96219 0.95461 0.86913 1.21746 0.93856 0.95104 0.89966 1.46889 1.49381 1.14429 1.23186 1.17424 0.79129 0.80816 0.80522 1.90916 1.41332 1.56784 1.56330 1.86293 1.69170 1.28648 1.43761 1.22043 0.92120 0.94786 0.81161 1.22525 0.93813 1.05356 1.02471 1.21848 1.02714 0.92778 1.02312 1.22513 1.01389 1.02772 0.97332 1.21958 1.02378 0.80256 0.93049 1.24140 0.98535 0.95611 0.94468 0.88487 0.92448 0.94544 0.94699 0.93199 0.92197 0.92657 0.83722 0.89807 0.91369 0.90732 0.91713 0.92142 0.91250 0.89164 0.91613 0.90225 0.91506 0.89274 0.91249 0.92352 0.89072 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.87 37.16 0.33 -2.27 16 2 C -0.11 -2.37 4.81 -26.73 -0.13 -2.50 16 3 C 0.19 4.32 1.69 -68.86 -0.12 4.20 16 4 H 0.00 0.04 6.31 -51.93 -0.33 -0.29 16 5 C -0.53 -14.46 9.06 -34.44 -0.31 -14.77 16 6 H 0.07 2.19 7.69 -52.49 -0.40 1.79 16 7 C 0.08 2.22 5.29 -17.82 -0.09 2.13 16 8 N -0.89 -26.65 13.96 55.43 0.77 -25.88 16 9 Si 0.86 20.71 25.73 -169.99 -4.37 16.33 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.25 -5.57 5.43 56.52 0.31 -5.26 16 13 N -0.67 -12.52 5.22 -100.12 -0.52 -13.04 16 14 C 0.08 1.25 2.52 -66.92 -0.17 1.08 16 15 H 0.10 1.44 6.72 -51.92 -0.35 1.09 16 16 C -0.16 -2.07 6.85 -26.04 -0.18 -2.25 16 17 C -0.13 -1.36 4.96 -88.76 -0.44 -1.80 16 18 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 19 C 0.12 1.27 6.39 -3.45 -0.02 1.24 16 20 N -0.60 -8.15 3.14 -176.15 -0.55 -8.70 16 21 C 0.67 10.00 7.91 54.06 0.43 10.43 16 22 O -0.56 -9.76 12.19 -19.28 -0.23 -10.00 16 23 O -0.36 -4.76 9.45 -40.32 -0.38 -5.15 16 24 C 0.14 1.47 1.13 -90.62 -0.10 1.36 16 25 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 26 C -0.14 -1.08 8.85 37.16 0.33 -0.75 16 27 C -0.18 -1.90 8.37 37.16 0.31 -1.59 16 28 C 0.14 2.05 5.89 -1.87 -0.01 2.04 16 29 C -0.11 -1.34 5.18 -87.02 -0.45 -1.79 16 30 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.93 6.58 -51.93 -0.34 0.58 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.05 1.13 4.55 -51.93 -0.24 0.90 16 35 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.34 6.80 6.79 -39.29 -0.27 6.54 16 38 H 0.08 1.23 7.34 -51.93 -0.38 0.85 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.79 8.12 -51.92 -0.42 0.37 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.27 5.88 -51.93 -0.31 0.96 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.09 1.17 5.88 -51.94 -0.31 0.86 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.09 1.51 6.45 -51.93 -0.33 1.17 16 52 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -30.33 388.23 -9.00 -39.33 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -9.24 Total: 8.22 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: -0.32 Total: -6.97 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.30 Total: -47.62 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.62 Total: -15.14 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -4.37 Total: 16.33 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.33 -9.00 -39.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.383 kcal (2) G-P(sol) polarization free energy of solvation -30.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds