Wall clock time and date at job start Tue Mar 31 2020 15:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47186 * 2 1 4 4 H 1.08996 * 109.47454 * 305.81746 * 3 2 1 5 5 C 1.50699 * 109.47211 * 185.80925 * 3 2 1 6 6 H 1.07997 * 120.00131 * 240.22006 * 5 3 2 7 7 C 1.37875 * 119.99951 * 60.22453 * 5 3 2 8 8 N 1.31510 * 120.00361 * 197.46393 * 7 5 3 9 9 Si 1.86805 * 119.99759 * 17.46791 * 7 5 3 10 10 H 1.48499 * 109.47247 * 92.25585 * 9 7 5 11 11 H 1.48500 * 109.47118 * 212.25358 * 9 7 5 12 12 H 1.48499 * 109.47126 * 332.25244 * 9 7 5 13 13 N 1.46900 * 109.46885 * 65.81244 * 3 2 1 14 14 C 1.46898 * 111.00409 * 262.47209 * 13 3 2 15 15 H 1.09008 * 112.81664 * 16.63245 * 14 13 3 16 16 C 1.53727 * 113.57567 * 245.56576 * 14 13 3 17 17 C 1.53598 * 87.29986 * 219.90034 * 16 14 13 18 18 H 1.08998 * 116.03902 * 266.93748 * 17 16 14 19 19 C 1.53882 * 113.70997 * 130.09014 * 17 16 14 20 20 N 1.46737 * 106.77555 * 294.48942 * 19 17 16 21 21 C 1.34785 * 125.32536 * 161.96879 * 20 19 17 22 22 O 1.21509 * 119.99754 * 179.97438 * 21 20 19 23 23 O 1.34639 * 119.99920 * 359.97148 * 21 20 19 24 24 C 1.45196 * 116.99549 * 180.02562 * 23 21 20 25 25 C 1.52998 * 109.47207 * 60.00427 * 24 23 21 26 26 C 1.53005 * 109.46974 * 180.02562 * 24 23 21 27 27 C 1.53003 * 109.47281 * 300.00134 * 24 23 21 28 28 C 1.46634 * 109.35005 * 341.94417 * 20 19 17 29 29 C 1.53794 * 113.58118 * 147.70883 * 14 13 3 30 30 H 1.08994 * 116.05206 * 258.09981 * 29 14 13 31 31 H 1.08997 * 109.46447 * 299.40933 * 1 2 3 32 32 H 1.09005 * 109.47011 * 59.40719 * 1 2 3 33 33 H 1.08994 * 109.46532 * 179.40635 * 1 2 3 34 34 H 1.09002 * 109.47458 * 240.00611 * 2 1 3 35 35 H 1.08995 * 109.47537 * 119.99916 * 2 1 3 36 36 H 0.96995 * 120.00255 * 179.97438 * 8 7 5 37 37 H 1.00902 * 111.00473 * 138.51744 * 13 3 2 38 38 H 1.09003 * 113.57710 * 334.50508 * 16 14 13 39 39 H 1.08991 * 113.58173 * 105.22014 * 16 14 13 40 40 H 1.09008 * 109.99963 * 53.81670 * 19 17 16 41 41 H 1.08998 * 109.99995 * 175.15642 * 19 17 16 42 42 H 1.08995 * 109.47506 * 59.99796 * 25 24 23 43 43 H 1.09004 * 109.46815 * 179.97438 * 25 24 23 44 44 H 1.09004 * 109.46916 * 299.99250 * 25 24 23 45 45 H 1.09002 * 109.47180 * 59.99411 * 26 24 23 46 46 H 1.08999 * 109.47481 * 180.02562 * 26 24 23 47 47 H 1.09003 * 109.46618 * 300.00250 * 26 24 23 48 48 H 1.08989 * 109.47109 * 60.00406 * 27 24 23 49 49 H 1.08999 * 109.46884 * 180.02562 * 27 24 23 50 50 H 1.09001 * 109.47062 * 299.99808 * 27 24 23 51 51 H 1.09004 * 109.76217 * 120.82646 * 28 20 19 52 52 H 1.09004 * 109.76949 * 241.55023 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5942 1.9856 -0.8333 5 6 3.5402 1.4449 -0.1438 6 1 4.1559 1.8827 0.6279 7 6 4.1265 0.8884 -1.2607 8 7 5.4039 0.5759 -1.2462 9 14 3.1065 0.5783 -2.7946 10 1 3.1988 1.7543 -3.6966 11 1 3.6209 -0.6252 -3.4962 12 1 1.6889 0.3591 -2.4105 13 7 1.6683 2.0933 1.2634 14 6 0.4453 2.8915 1.1046 15 1 -0.1120 2.6361 0.2032 16 6 0.6697 4.4020 1.2815 17 6 -0.6662 4.4381 2.0387 18 1 -1.5484 4.6692 1.4419 19 6 -0.5892 5.1605 3.3952 20 7 0.2923 4.3595 4.2522 21 6 0.8944 4.7967 5.3761 22 8 1.6070 4.0476 6.0144 23 8 0.7061 6.0636 5.7914 24 6 1.3861 6.4657 7.0096 25 6 2.8972 6.3142 6.8240 26 6 1.0539 7.9265 7.3207 27 6 0.9233 5.5801 8.1682 28 6 0.4153 3.0087 3.6951 29 6 -0.4246 2.9430 2.3718 30 1 -1.3008 2.2948 2.3776 31 1 -0.3632 0.5046 0.8952 32 1 -0.3633 0.5230 -0.8847 33 1 -0.3632 -1.0276 -0.0106 34 1 1.8934 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8899 36 1 5.8163 0.1841 -2.0318 37 1 2.4260 2.6589 1.6156 38 1 1.5306 4.6449 1.9043 39 1 0.6559 4.9575 0.3439 40 1 -0.1731 6.1593 3.2626 41 1 -1.5823 5.2261 3.8396 42 1 3.2270 6.9451 5.9986 43 1 3.4077 6.6166 7.7384 44 1 3.1336 5.2734 6.6027 45 1 -0.0227 8.0341 7.4529 46 1 1.5648 8.2286 8.2349 47 1 1.3834 8.5577 6.4952 48 1 1.1596 4.5394 7.9469 49 1 1.4335 5.8824 9.0828 50 1 -0.1533 5.6881 8.3005 51 1 1.4614 2.7939 3.4767 52 1 0.0303 2.2794 4.4079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255157086.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:18 Heat of formation + Delta-G solvation = -68.066896 kcal Electronic energy + Delta-G solvation = -29369.323187 eV Core-core repulsion = 25562.091518 eV Total energy + Delta-G solvation = -3807.231669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.20114 -41.14294 -38.28358 -37.53111 -35.70198 -34.74773 -34.04756 -32.11555 -30.11691 -28.99057 -28.37595 -28.28729 -27.71459 -25.09427 -24.36754 -23.11875 -22.29924 -21.34837 -20.37193 -19.98860 -18.94555 -18.56870 -17.75469 -17.53334 -17.20506 -16.54594 -16.10427 -15.79998 -15.55866 -15.33508 -14.91493 -14.82258 -14.67096 -14.35665 -14.22856 -13.88981 -13.65742 -13.50883 -13.49164 -13.34179 -13.10709 -13.01253 -12.87107 -12.85941 -12.81367 -12.65540 -12.56077 -12.39124 -12.27431 -12.10952 -11.72564 -11.70332 -11.39923 -11.31304 -11.13799 -11.09218 -11.04298 -10.93748 -10.49109 -9.73412 -8.98629 -8.32749 -6.31021 1.07336 1.34684 1.38041 1.48618 1.73871 2.35332 2.94087 3.01328 3.30103 3.41948 3.61459 3.71492 3.75813 3.79721 3.94671 4.10205 4.16753 4.38076 4.46414 4.50612 4.53506 4.58131 4.60620 4.65050 4.69206 4.71739 4.75447 4.75574 4.78719 4.83192 4.88012 4.90656 4.95706 5.00084 5.10385 5.13649 5.21857 5.26717 5.27688 5.28287 5.35317 5.36723 5.44623 5.48873 5.51190 5.62239 5.86270 6.06550 6.43965 6.51280 6.74479 6.87949 7.26171 7.34108 8.84252 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.018927 B = 0.003022 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.005552 B = 9262.582664 C = 9880.017970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 C 0.202 3.798 4 H 0.007 0.993 5 C -0.539 4.539 6 H 0.028 0.972 7 C 0.019 3.981 8 N -0.942 5.942 9 Si 0.930 3.070 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.217 1.217 13 N -0.670 5.670 14 C 0.072 3.928 15 H 0.105 0.895 16 C -0.159 4.159 17 C -0.100 4.100 18 H 0.152 0.848 19 C 0.113 3.887 20 N -0.600 5.600 21 C 0.659 3.341 22 O -0.597 6.597 23 O -0.363 6.363 24 C 0.123 3.877 25 C -0.182 4.182 26 C -0.132 4.132 27 C -0.178 4.178 28 C 0.145 3.855 29 C -0.096 4.096 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.035 0.965 35 H 0.040 0.960 36 H 0.265 0.735 37 H 0.330 0.670 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.058 0.942 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.091 0.909 50 H 0.066 0.934 51 H 0.057 0.943 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.429 14.267 12.316 26.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.093 3.907 4 H 0.024 0.976 5 C -0.577 4.577 6 H 0.046 0.954 7 C -0.179 4.179 8 N -0.581 5.581 9 Si 0.754 3.246 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.140 1.140 13 N -0.299 5.299 14 C -0.039 4.039 15 H 0.123 0.877 16 C -0.198 4.198 17 C -0.119 4.119 18 H 0.169 0.831 19 C -0.008 4.008 20 N -0.340 5.340 21 C 0.414 3.586 22 O -0.489 6.489 23 O -0.277 6.277 24 C 0.087 3.913 25 C -0.239 4.239 26 C -0.189 4.189 27 C -0.235 4.235 28 C 0.023 3.977 29 C -0.116 4.116 30 H 0.140 0.860 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.148 0.852 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.073 0.927 45 H 0.092 0.908 46 H 0.121 0.879 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.110 0.890 50 H 0.085 0.915 51 H 0.075 0.925 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.329 13.488 12.796 26.108 hybrid contribution 1.408 0.160 -1.149 1.824 sum -16.921 13.648 11.647 24.663 Atomic orbital electron populations 1.21770 0.94847 1.01254 1.01776 1.21820 0.96081 0.97865 0.99308 1.19301 0.91943 0.92041 0.87421 0.97584 1.21551 0.92249 1.38806 1.05136 0.95387 1.25822 0.95866 0.93999 1.02259 1.70160 1.14416 1.43001 1.30508 0.86172 0.82219 0.77412 0.78838 1.20546 1.21627 1.13964 1.60448 1.06278 1.34272 1.28876 1.23228 0.92394 0.90725 0.97526 0.87669 1.23553 0.97565 0.98079 1.00653 1.23456 0.99090 0.94283 0.95091 0.83058 1.21968 0.94399 0.94803 0.89679 1.46990 1.49418 1.14581 1.23041 1.17670 0.78919 0.81225 0.80763 1.90905 1.42700 1.57772 1.57497 1.86303 1.69306 1.27319 1.44798 1.22440 0.91549 0.96829 0.80457 1.22489 0.94852 1.03008 1.03580 1.21866 1.03613 0.90035 1.03408 1.22457 1.02162 1.00763 0.98140 1.21849 1.00848 0.80808 0.94202 1.24050 0.98081 0.97699 0.91795 0.85975 0.91116 0.93283 0.92929 0.94610 0.94157 0.92648 0.85151 0.92250 0.90646 0.90354 0.89225 0.92335 0.88856 0.92679 0.90751 0.87880 0.91372 0.92500 0.88975 0.91543 0.92487 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.35 8.87 71.98 0.64 -3.72 16 2 C -0.11 -4.68 4.81 30.60 0.15 -4.53 16 3 C 0.20 8.99 1.69 44.17 0.07 9.07 16 4 H 0.01 0.29 6.31 -2.39 -0.02 0.27 16 5 C -0.54 -30.50 9.06 25.60 0.23 -30.27 16 6 H 0.03 1.79 7.69 -2.91 -0.02 1.76 16 7 C 0.02 1.10 5.29 84.65 0.45 1.55 16 8 N -0.94 -59.18 13.96 21.45 0.30 -58.88 16 9 Si 0.93 42.93 25.73 68.60 1.77 44.69 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.22 -8.87 5.43 99.48 0.54 -8.33 16 13 N -0.67 -25.51 5.22 -470.68 -2.46 -27.97 16 14 C 0.07 2.01 2.52 45.43 0.11 2.12 16 15 H 0.11 2.78 6.72 -2.38 -0.02 2.76 16 16 C -0.16 -3.97 6.85 31.04 0.21 -3.76 16 17 C -0.10 -1.76 4.96 -9.59 -0.05 -1.81 16 18 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 19 C 0.11 2.15 6.39 86.63 0.55 2.70 16 20 N -0.60 -16.10 3.14 -941.61 -2.95 -19.05 16 21 C 0.66 20.21 7.91 129.79 1.03 21.23 16 22 O -0.60 -21.95 12.19 19.81 0.24 -21.71 16 23 O -0.36 -9.33 9.45 -55.49 -0.52 -9.85 16 24 C 0.12 2.57 1.13 -10.79 -0.01 2.55 16 25 C -0.18 -4.11 8.37 71.98 0.60 -3.51 16 26 C -0.13 -1.72 8.85 71.98 0.64 -1.08 16 27 C -0.18 -3.58 8.37 71.98 0.60 -2.98 16 28 C 0.14 4.10 5.89 87.71 0.52 4.62 16 29 C -0.10 -2.14 5.18 -8.46 -0.04 -2.19 16 30 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.07 2.02 6.58 -2.39 -0.02 2.00 16 32 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.57 4.55 -2.39 -0.01 1.56 16 35 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 37 H 0.33 14.00 6.79 -89.69 -0.61 13.39 16 38 H 0.06 1.78 7.34 -2.39 -0.02 1.77 16 39 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 1.47 8.12 -2.38 -0.02 1.45 16 41 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.05 1.65 5.88 -2.38 -0.01 1.64 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.06 1.54 5.88 -2.39 -0.01 1.53 16 49 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 50 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.06 2.01 6.45 -2.38 -0.02 1.99 16 52 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -71.79 388.23 2.20 -69.59 By element: Atomic # 1 Polarization: 33.04 SS G_CDS: 0.12 Total: 33.16 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 5.70 Total: -9.99 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -5.11 Total: -105.90 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -0.28 Total: -31.56 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 1.77 Total: 44.69 kcal Total: -71.79 2.20 -69.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255157086.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.522 kcal (2) G-P(sol) polarization free energy of solvation -71.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds