Wall clock time and date at job start Tue Mar 31 2020 15:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47216 * 2 1 4 4 H 1.09005 * 109.47237 * 305.39721 * 3 2 1 5 5 C 1.50704 * 109.47264 * 185.39654 * 3 2 1 6 6 H 1.07996 * 119.99748 * 274.49611 * 5 3 2 7 7 C 1.37876 * 119.99713 * 94.49829 * 5 3 2 8 8 N 1.31515 * 119.99362 * 174.72695 * 7 5 3 9 9 Si 1.86794 * 120.00184 * 354.72618 * 7 5 3 10 10 H 1.48504 * 109.47211 * 94.57914 * 9 7 5 11 11 H 1.48501 * 109.46775 * 214.57683 * 9 7 5 12 12 H 1.48491 * 109.47240 * 334.57652 * 9 7 5 13 13 N 1.46901 * 109.47399 * 65.39453 * 3 2 1 14 14 C 1.47730 * 111.00386 * 165.74142 * 13 3 2 15 15 C 1.52870 * 86.81841 * 140.57478 * 14 13 3 16 16 H 1.08996 * 112.43136 * 83.51086 * 15 14 13 17 17 C 1.50875 * 115.96671 * 213.47655 * 15 14 13 18 18 N 1.45681 * 113.22540 * 72.03229 * 17 15 14 19 19 C 1.34777 * 119.86366 * 219.37746 * 18 17 15 20 20 O 1.21518 * 120.00366 * 359.97198 * 19 18 17 21 21 O 1.34644 * 120.00128 * 179.97438 * 19 18 17 22 22 C 1.45196 * 116.99973 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47529 * 59.99275 * 22 21 19 24 24 C 1.53000 * 109.47082 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.47107 * 299.99521 * 22 21 19 26 26 C 1.46601 * 120.27290 * 39.34914 * 18 17 15 27 27 C 1.53106 * 108.04090 * 302.81143 * 26 18 17 28 28 C 1.48254 * 111.00127 * 261.10402 * 13 3 2 29 29 H 1.09004 * 113.91660 * 104.59761 * 28 13 3 30 30 H 1.08994 * 109.46854 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46937 * 59.99771 * 1 2 3 32 32 H 1.09001 * 109.46859 * 299.99792 * 1 2 3 33 33 H 1.09000 * 109.47247 * 119.99794 * 2 1 3 34 34 H 1.09001 * 109.46859 * 240.00208 * 2 1 3 35 35 H 0.97001 * 119.99441 * 179.97438 * 8 7 5 36 36 H 1.08996 * 113.65961 * 255.05868 * 14 13 3 37 37 H 1.09002 * 113.65399 * 26.00518 * 14 13 3 38 38 H 1.08999 * 108.73276 * 192.99259 * 17 15 14 39 39 H 1.08994 * 108.73856 * 311.06300 * 17 15 14 40 40 H 1.09001 * 109.46749 * 60.00328 * 23 22 21 41 41 H 1.08998 * 109.47219 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47717 * 300.00345 * 23 22 21 43 43 H 1.08994 * 109.47060 * 59.99592 * 24 22 21 44 44 H 1.09005 * 109.47050 * 179.97438 * 24 22 21 45 45 H 1.09001 * 109.46984 * 299.99542 * 24 22 21 46 46 H 1.09000 * 109.47296 * 60.00030 * 25 22 21 47 47 H 1.08998 * 109.47581 * 179.97438 * 25 22 21 48 48 H 1.09001 * 109.47510 * 300.00303 * 25 22 21 49 49 H 1.09002 * 109.75451 * 183.16695 * 26 18 17 50 50 H 1.09007 * 109.74377 * 62.44190 * 26 18 17 51 51 H 1.09002 * 109.48363 * 298.86394 * 27 26 18 52 52 H 1.09005 * 109.50090 * 178.81838 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 -0.8377 5 6 3.5411 1.4446 -0.1336 6 1 4.1615 1.3428 0.7445 7 6 4.1223 1.5765 -1.3769 8 7 5.4288 1.6826 -1.4840 9 14 3.0542 1.6044 -2.9091 10 1 2.7577 3.0114 -3.2803 11 1 3.7725 0.9388 -4.0254 12 1 1.7833 0.8852 -2.6396 13 7 1.6596 2.0964 1.2592 14 6 2.4087 3.3554 1.4494 15 6 1.1100 3.9455 1.9992 16 1 0.9618 3.7139 3.0539 17 6 0.8775 5.4091 1.7161 18 7 0.5514 5.6799 0.3224 19 6 1.0572 6.7714 -0.2853 20 8 1.7832 7.5275 0.3293 21 8 0.7580 7.0241 -1.5736 22 6 1.3386 8.2171 -2.1633 23 6 2.8646 8.1234 -2.1064 24 6 0.8884 8.3364 -3.6207 25 6 0.8739 9.4491 -1.3841 26 6 -0.3242 4.7698 -0.4221 27 6 0.2973 3.3712 -0.3770 28 6 0.4452 2.9277 1.0804 29 1 -0.4594 2.4837 1.4960 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 5.8377 1.7750 -2.3588 36 1 3.2046 3.2832 2.1906 37 1 2.7383 3.8133 0.5167 38 1 0.0574 5.7607 2.3422 39 1 1.7780 5.9639 1.9791 40 1 3.1957 7.2458 -2.6615 41 1 3.3004 9.0189 -2.5495 42 1 3.1850 8.0387 -1.0680 43 1 -0.1988 8.4034 -3.6608 44 1 1.3239 9.2323 -4.0633 45 1 1.2191 7.4588 -4.1762 46 1 1.1942 9.3644 -0.3457 47 1 1.3100 10.3447 -1.8265 48 1 -0.2133 9.5160 -1.4246 49 1 -0.4074 5.1027 -1.4567 50 1 -1.3115 4.7490 0.0394 51 1 1.2784 3.3939 -0.8515 52 1 -0.3468 2.6695 -0.9070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255163566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:26 Heat of formation + Delta-G solvation = -27.328803 kcal Electronic energy + Delta-G solvation = -30853.055286 eV Core-core repulsion = 27047.590154 eV Total energy + Delta-G solvation = -3805.465132 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.28374 -40.27779 -37.40240 -35.62580 -34.28880 -33.65072 -32.13711 -31.27025 -29.43570 -27.47277 -27.36920 -27.33427 -25.36156 -24.04036 -22.85750 -22.59469 -21.55981 -19.53363 -19.08484 -18.13094 -17.55207 -16.89748 -16.55533 -16.12287 -15.58198 -15.21655 -15.08498 -14.55981 -14.43181 -14.14902 -13.74385 -13.53182 -13.25956 -13.18653 -12.89815 -12.72082 -12.57064 -12.30012 -12.20310 -11.97903 -11.94525 -11.88940 -11.66717 -11.43516 -11.35727 -11.29472 -11.25023 -11.00370 -10.98507 -10.72028 -10.38351 -10.32836 -9.95250 -9.87223 -9.77527 -9.72245 -9.49593 -8.99012 -8.59642 -8.50582 -7.76208 -6.14815 -4.13295 2.24597 2.97659 3.17635 3.28924 3.29927 3.89448 4.32702 4.58232 4.68361 4.72710 4.81209 4.87273 4.97929 5.14986 5.21950 5.31595 5.35814 5.39027 5.49343 5.51297 5.60875 5.67088 5.73767 5.77083 5.80042 5.85155 5.87714 5.91040 5.93875 5.98530 6.00726 6.12212 6.14826 6.23687 6.25276 6.36418 6.41738 6.49318 6.54977 6.56149 6.66067 6.70960 6.77384 6.90907 6.97404 7.21198 7.44982 7.47545 7.75049 7.98523 8.46800 8.54773 8.95138 9.48698 10.98267 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012572 B = 0.005152 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.705486 B = 5433.592294 C = 6377.600188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.103 4.103 3 C 0.130 3.870 4 H 0.039 0.961 5 C -0.510 4.510 6 H 0.077 0.923 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.859 3.141 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.257 1.257 13 N -0.458 5.458 14 C 0.039 3.961 15 C -0.137 4.137 16 H 0.106 0.894 17 C 0.142 3.858 18 N -0.585 5.585 19 C 0.653 3.347 20 O -0.570 6.570 21 O -0.363 6.363 22 C 0.135 3.865 23 C -0.185 4.185 24 C -0.141 4.141 25 C -0.181 4.181 26 C 0.116 3.884 27 C -0.158 4.158 28 C 0.032 3.968 29 H 0.086 0.914 30 H 0.036 0.964 31 H 0.038 0.962 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.264 0.736 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.093 0.907 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.089 0.911 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.057 0.943 49 H 0.090 0.910 50 H 0.070 0.930 51 H 0.091 0.909 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.318 11.452 -0.408 17.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.142 4.142 3 C 0.022 3.978 4 H 0.056 0.944 5 C -0.548 4.548 6 H 0.095 0.905 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.686 3.314 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.182 1.182 13 N -0.180 5.180 14 C -0.090 4.090 15 C -0.156 4.156 16 H 0.124 0.876 17 C 0.020 3.980 18 N -0.324 5.324 19 C 0.408 3.592 20 O -0.460 6.460 21 O -0.278 6.278 22 C 0.099 3.901 23 C -0.242 4.242 24 C -0.198 4.198 25 C -0.238 4.238 26 C -0.007 4.007 27 C -0.197 4.197 28 C -0.078 4.078 29 H 0.104 0.896 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.111 0.889 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.108 0.892 43 H 0.084 0.916 44 H 0.097 0.903 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.087 0.913 48 H 0.076 0.924 49 H 0.108 0.892 50 H 0.089 0.911 51 H 0.110 0.890 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.874 11.149 0.078 17.031 hybrid contribution -0.310 0.363 -1.744 1.808 sum -13.184 11.513 -1.666 17.582 Atomic orbital electron populations 1.21917 0.98609 0.99740 1.00598 1.21624 0.92549 0.99174 1.00858 1.20586 0.96745 0.91833 0.88623 0.94400 1.20955 0.88969 1.50107 0.94799 0.90476 1.24983 0.94726 0.94498 0.98572 1.69900 1.09473 1.49560 1.24191 0.87134 0.81799 0.78692 0.83816 1.20335 1.21171 1.18163 1.69446 1.01369 1.14405 1.32796 1.23358 0.94521 0.90718 1.00406 1.22467 1.00244 0.92194 1.00711 0.87566 1.20593 1.01988 0.96660 0.78746 1.46491 1.50118 1.23079 1.12756 1.17938 0.78826 0.81884 0.80513 1.90866 1.40304 1.48769 1.66053 1.86288 1.69976 1.46246 1.25266 1.22038 0.93520 0.81859 0.92720 1.22521 0.93768 1.02509 1.05412 1.21854 1.02233 1.02966 0.92719 1.22500 1.01351 0.96616 1.03338 1.21608 0.92656 0.89474 0.97004 1.22510 1.03228 0.95770 0.98189 1.23071 0.97442 0.94034 0.93230 0.89552 0.94483 0.94297 0.92741 0.92489 0.93151 0.92647 0.90880 0.90962 0.92164 0.88875 0.91945 0.91338 0.89208 0.91635 0.90265 0.91401 0.89341 0.91340 0.92409 0.89163 0.91123 0.89033 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.31 37.16 0.35 -2.24 16 2 C -0.10 -2.17 5.27 -26.73 -0.14 -2.31 16 3 C 0.13 2.89 0.80 -68.86 -0.05 2.84 16 4 H 0.04 0.85 1.81 -51.93 -0.09 0.76 16 5 C -0.51 -13.80 7.45 -34.44 -0.26 -14.06 16 6 H 0.08 2.34 8.05 -52.49 -0.42 1.92 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -26.85 13.96 55.43 0.77 -26.07 16 9 Si 0.86 20.79 26.44 -169.99 -4.50 16.30 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 12 H -0.26 -5.87 6.15 56.52 0.35 -5.52 16 13 N -0.46 -9.06 5.96 -236.01 -1.41 -10.47 16 14 C 0.04 0.76 5.89 -8.15 -0.05 0.71 16 15 C -0.14 -2.05 4.11 -92.10 -0.38 -2.43 16 16 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 17 C 0.14 2.01 5.99 -5.55 -0.03 1.97 16 18 N -0.58 -8.83 2.98 -181.27 -0.54 -9.37 16 19 C 0.65 10.76 7.70 54.06 0.42 11.18 16 20 O -0.57 -10.20 11.27 -19.29 -0.22 -10.42 16 21 O -0.36 -5.53 8.44 -40.34 -0.34 -5.87 16 22 C 0.14 1.73 1.13 -90.62 -0.10 1.63 16 23 C -0.18 -2.53 8.37 37.16 0.31 -2.22 16 24 C -0.14 -1.40 8.85 37.16 0.33 -1.07 16 25 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16 26 C 0.12 1.57 6.41 -3.93 -0.03 1.54 16 27 C -0.16 -2.52 4.03 -26.65 -0.11 -2.63 16 28 C 0.03 0.51 3.31 -71.97 -0.24 0.27 16 29 H 0.09 1.25 7.31 -51.93 -0.38 0.87 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.04 0.64 7.25 -51.93 -0.38 0.26 16 32 H 0.05 0.88 6.23 -51.93 -0.32 0.56 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.11 7.20 -51.93 -0.37 0.74 16 35 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 37 H 0.07 1.63 6.66 -51.93 -0.35 1.28 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.43 7.06 -51.93 -0.37 1.07 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.44 5.88 -51.93 -0.31 1.14 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.22 5.88 -51.93 -0.31 0.91 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.09 1.20 6.83 -51.93 -0.35 0.85 16 50 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 51 H 0.09 1.83 4.91 -51.93 -0.26 1.57 16 52 H 0.08 1.18 7.12 -51.93 -0.37 0.81 16 LS Contribution 378.22 15.07 5.70 5.70 Total: -1.00 -30.45 378.22 -9.25 -39.70 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.96 Total: 7.08 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 0.23 Total: -6.57 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -1.17 Total: -45.92 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.56 Total: -16.30 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -4.50 Total: 16.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.45 -9.25 -39.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.375 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds