Wall clock time and date at job start Tue Mar 31 2020 15:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47216 * 2 1 4 4 H 1.09005 * 109.47237 * 305.39721 * 3 2 1 5 5 C 1.50704 * 109.47264 * 185.39654 * 3 2 1 6 6 H 1.07996 * 119.99748 * 274.49611 * 5 3 2 7 7 C 1.37876 * 119.99713 * 94.49829 * 5 3 2 8 8 N 1.31515 * 119.99362 * 174.72695 * 7 5 3 9 9 Si 1.86794 * 120.00184 * 354.72618 * 7 5 3 10 10 H 1.48504 * 109.47211 * 94.57914 * 9 7 5 11 11 H 1.48501 * 109.46775 * 214.57683 * 9 7 5 12 12 H 1.48491 * 109.47240 * 334.57652 * 9 7 5 13 13 N 1.46901 * 109.47399 * 65.39453 * 3 2 1 14 14 C 1.47730 * 111.00386 * 165.74142 * 13 3 2 15 15 C 1.52870 * 86.81841 * 140.57478 * 14 13 3 16 16 H 1.08996 * 112.43136 * 83.51086 * 15 14 13 17 17 C 1.50875 * 115.96671 * 213.47655 * 15 14 13 18 18 N 1.45681 * 113.22540 * 72.03229 * 17 15 14 19 19 C 1.34777 * 119.86366 * 219.37746 * 18 17 15 20 20 O 1.21518 * 120.00366 * 359.97198 * 19 18 17 21 21 O 1.34644 * 120.00128 * 179.97438 * 19 18 17 22 22 C 1.45196 * 116.99973 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.47529 * 59.99275 * 22 21 19 24 24 C 1.53000 * 109.47082 * 180.02562 * 22 21 19 25 25 C 1.53001 * 109.47107 * 299.99521 * 22 21 19 26 26 C 1.46601 * 120.27290 * 39.34914 * 18 17 15 27 27 C 1.53106 * 108.04090 * 302.81143 * 26 18 17 28 28 C 1.48254 * 111.00127 * 261.10402 * 13 3 2 29 29 H 1.09004 * 113.91660 * 104.59761 * 28 13 3 30 30 H 1.08994 * 109.46854 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46937 * 59.99771 * 1 2 3 32 32 H 1.09001 * 109.46859 * 299.99792 * 1 2 3 33 33 H 1.09000 * 109.47247 * 119.99794 * 2 1 3 34 34 H 1.09001 * 109.46859 * 240.00208 * 2 1 3 35 35 H 0.97001 * 119.99441 * 179.97438 * 8 7 5 36 36 H 1.08996 * 113.65961 * 255.05868 * 14 13 3 37 37 H 1.09002 * 113.65399 * 26.00518 * 14 13 3 38 38 H 1.08999 * 108.73276 * 192.99259 * 17 15 14 39 39 H 1.08994 * 108.73856 * 311.06300 * 17 15 14 40 40 H 1.09001 * 109.46749 * 60.00328 * 23 22 21 41 41 H 1.08998 * 109.47219 * 179.97438 * 23 22 21 42 42 H 1.08995 * 109.47717 * 300.00345 * 23 22 21 43 43 H 1.08994 * 109.47060 * 59.99592 * 24 22 21 44 44 H 1.09005 * 109.47050 * 179.97438 * 24 22 21 45 45 H 1.09001 * 109.46984 * 299.99542 * 24 22 21 46 46 H 1.09000 * 109.47296 * 60.00030 * 25 22 21 47 47 H 1.08998 * 109.47581 * 179.97438 * 25 22 21 48 48 H 1.09001 * 109.47510 * 300.00303 * 25 22 21 49 49 H 1.09002 * 109.75451 * 183.16695 * 26 18 17 50 50 H 1.09007 * 109.74377 * 62.44190 * 26 18 17 51 51 H 1.09002 * 109.48363 * 298.86394 * 27 26 18 52 52 H 1.09005 * 109.50090 * 178.81838 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5999 1.9835 -0.8377 5 6 3.5411 1.4446 -0.1336 6 1 4.1615 1.3428 0.7445 7 6 4.1223 1.5765 -1.3769 8 7 5.4288 1.6826 -1.4840 9 14 3.0542 1.6044 -2.9091 10 1 2.7577 3.0114 -3.2803 11 1 3.7725 0.9388 -4.0254 12 1 1.7833 0.8852 -2.6396 13 7 1.6596 2.0964 1.2592 14 6 2.4087 3.3554 1.4494 15 6 1.1100 3.9455 1.9992 16 1 0.9618 3.7139 3.0539 17 6 0.8775 5.4091 1.7161 18 7 0.5514 5.6799 0.3224 19 6 1.0572 6.7714 -0.2853 20 8 1.7832 7.5275 0.3293 21 8 0.7580 7.0241 -1.5736 22 6 1.3386 8.2171 -2.1633 23 6 2.8646 8.1234 -2.1064 24 6 0.8884 8.3364 -3.6207 25 6 0.8739 9.4491 -1.3841 26 6 -0.3242 4.7698 -0.4221 27 6 0.2973 3.3712 -0.3770 28 6 0.4452 2.9277 1.0804 29 1 -0.4594 2.4837 1.4960 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 5.8377 1.7750 -2.3588 36 1 3.2046 3.2832 2.1906 37 1 2.7383 3.8133 0.5167 38 1 0.0574 5.7607 2.3422 39 1 1.7780 5.9639 1.9791 40 1 3.1957 7.2458 -2.6615 41 1 3.3004 9.0189 -2.5495 42 1 3.1850 8.0387 -1.0680 43 1 -0.1988 8.4034 -3.6608 44 1 1.3239 9.2323 -4.0633 45 1 1.2191 7.4588 -4.1762 46 1 1.1942 9.3644 -0.3457 47 1 1.3100 10.3447 -1.8265 48 1 -0.2133 9.5160 -1.4246 49 1 -0.4074 5.1027 -1.4567 50 1 -1.3115 4.7490 0.0394 51 1 1.2784 3.3939 -0.8515 52 1 -0.3468 2.6695 -0.9070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255163566.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:25 Heat of formation + Delta-G solvation = -48.533907 kcal Electronic energy + Delta-G solvation = -30853.974809 eV Core-core repulsion = 27047.590154 eV Total energy + Delta-G solvation = -3806.384655 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.60921 -41.53346 -38.58229 -36.96573 -35.78740 -34.83358 -34.11368 -32.54158 -30.88941 -28.98941 -28.39630 -28.30544 -26.78552 -25.56438 -24.22118 -24.13835 -22.79728 -20.78811 -20.56571 -19.51027 -19.18038 -18.43449 -17.69959 -17.34835 -17.13551 -16.66662 -16.35496 -16.11737 -15.65881 -15.29167 -15.12922 -14.83888 -14.69560 -14.50173 -14.45073 -14.14503 -13.84103 -13.53901 -13.35806 -13.20873 -13.08951 -12.98715 -12.96917 -12.87912 -12.78717 -12.62256 -12.49604 -12.43493 -12.26094 -12.13905 -11.94295 -11.84641 -11.48176 -11.40512 -11.22243 -11.07933 -10.97992 -10.90000 -10.65870 -9.71323 -9.36323 -8.35103 -6.36846 1.13831 1.21957 1.25644 1.36040 1.75421 2.25603 2.82956 2.97582 3.24973 3.47572 3.72612 3.75737 3.78330 3.93087 3.97287 4.11596 4.17099 4.29174 4.41033 4.48913 4.51079 4.54874 4.59502 4.62865 4.68878 4.70741 4.73043 4.73771 4.76835 4.81391 4.84872 4.85873 4.88708 4.97505 5.01838 5.03054 5.09377 5.12848 5.25654 5.29936 5.31545 5.38808 5.40733 5.47185 5.52358 5.58441 5.78295 5.80027 6.12554 6.28736 6.58155 6.71222 7.26615 7.29026 8.82305 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012572 B = 0.005152 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.705486 B = 5433.592294 C = 6377.600188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.106 4.106 3 C 0.134 3.866 4 H 0.048 0.952 5 C -0.505 4.505 6 H 0.023 0.977 7 C 0.013 3.987 8 N -0.948 5.948 9 Si 0.923 3.077 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.227 1.227 13 N -0.470 5.470 14 C 0.029 3.971 15 C -0.109 4.109 16 H 0.132 0.868 17 C 0.143 3.857 18 N -0.588 5.588 19 C 0.644 3.356 20 O -0.593 6.593 21 O -0.368 6.368 22 C 0.123 3.877 23 C -0.183 4.183 24 C -0.135 4.135 25 C -0.173 4.173 26 C 0.120 3.880 27 C -0.157 4.157 28 C 0.040 3.960 29 H 0.122 0.878 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.041 0.959 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.049 0.951 37 H 0.033 0.967 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.095 0.905 42 H 0.058 0.942 43 H 0.078 0.922 44 H 0.104 0.896 45 H 0.057 0.943 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.111 0.889 51 H 0.045 0.955 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.125 12.281 -1.098 21.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.026 3.974 4 H 0.065 0.935 5 C -0.543 4.543 6 H 0.042 0.958 7 C -0.184 4.184 8 N -0.589 5.589 9 Si 0.746 3.254 10 H -0.200 1.200 11 H -0.213 1.213 12 H -0.150 1.150 13 N -0.191 5.191 14 C -0.100 4.100 15 C -0.128 4.128 16 H 0.150 0.850 17 C 0.021 3.979 18 N -0.328 5.328 19 C 0.400 3.600 20 O -0.485 6.485 21 O -0.283 6.283 22 C 0.087 3.913 23 C -0.240 4.240 24 C -0.192 4.192 25 C -0.230 4.230 26 C -0.002 4.002 27 C -0.196 4.196 28 C -0.069 4.069 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.116 0.884 39 H 0.091 0.909 40 H 0.062 0.938 41 H 0.114 0.886 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.110 0.890 48 H 0.088 0.912 49 H 0.111 0.889 50 H 0.129 0.871 51 H 0.064 0.936 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.717 11.963 -0.599 21.386 hybrid contribution 1.324 0.129 -1.420 1.946 sum -16.393 12.092 -2.019 20.470 Atomic orbital electron populations 1.21805 0.94620 1.01592 1.01763 1.21549 0.96077 0.97349 0.99460 1.20476 0.93161 0.93399 0.90337 0.93515 1.21189 0.91734 1.48550 0.92842 0.95846 1.25848 0.95900 0.94449 1.02205 1.70072 1.11753 1.52140 1.24903 0.86105 0.81050 0.79017 0.79202 1.20002 1.21293 1.14991 1.69379 1.03522 1.14900 1.31336 1.23228 0.96487 0.91816 0.98504 1.22396 0.95811 0.92765 1.01854 0.84986 1.20637 1.02660 0.95496 0.79083 1.46674 1.50077 1.22918 1.13120 1.18197 0.78712 0.82241 0.80893 1.90859 1.41216 1.49771 1.66648 1.86289 1.70060 1.47434 1.24535 1.22420 0.92591 0.81722 0.94582 1.22495 0.95289 1.02969 1.03255 1.21880 1.03247 1.03747 0.90294 1.22417 1.02156 0.96809 1.01612 1.21733 0.93601 0.87235 0.97639 1.22457 1.01328 0.98088 0.97735 1.23216 0.96856 0.93112 0.93687 0.86068 0.92419 0.93156 0.91418 0.93966 0.94718 0.92797 0.93195 0.94854 0.88354 0.90886 0.93821 0.88611 0.92261 0.90276 0.87730 0.92348 0.91997 0.89015 0.91205 0.88946 0.87110 0.93614 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.23 9.31 71.98 0.67 -3.56 16 2 C -0.11 -4.32 5.27 30.59 0.16 -4.16 16 3 C 0.13 6.02 0.80 44.17 0.04 6.05 16 4 H 0.05 2.06 1.81 -2.38 0.00 2.05 16 5 C -0.50 -28.95 7.45 25.60 0.19 -28.76 16 6 H 0.02 1.54 8.05 -2.91 -0.02 1.52 16 7 C 0.01 0.78 5.47 84.65 0.46 1.24 16 8 N -0.95 -60.63 13.96 21.45 0.30 -60.34 16 9 Si 0.92 43.96 26.44 68.60 1.81 45.78 16 10 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 12 H -0.23 -9.62 6.15 99.48 0.61 -9.01 16 13 N -0.47 -18.38 5.96 -900.61 -5.37 -23.75 16 14 C 0.03 1.19 5.89 83.04 0.49 1.68 16 15 C -0.11 -3.05 4.11 -11.72 -0.05 -3.10 16 16 H 0.13 3.10 8.14 -2.39 -0.02 3.08 16 17 C 0.14 3.76 5.99 85.84 0.51 4.27 16 18 N -0.59 -16.75 2.98 -957.82 -2.85 -19.61 16 19 C 0.64 21.01 7.70 129.79 1.00 22.01 16 20 O -0.59 -21.76 11.27 19.78 0.22 -21.54 16 21 O -0.37 -10.90 8.44 -55.54 -0.47 -11.37 16 22 C 0.12 3.01 1.13 -10.79 -0.01 3.00 16 23 C -0.18 -5.07 8.37 71.98 0.60 -4.46 16 24 C -0.13 -2.35 8.85 71.98 0.64 -1.71 16 25 C -0.17 -3.67 8.37 71.98 0.60 -3.06 16 26 C 0.12 2.83 6.41 86.40 0.55 3.39 16 27 C -0.16 -4.57 4.03 30.65 0.12 -4.44 16 28 C 0.04 1.16 3.31 41.41 0.14 1.30 16 29 H 0.12 2.77 7.31 -2.38 -0.02 2.76 16 30 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.05 1.41 7.25 -2.39 -0.02 1.39 16 32 H 0.07 1.86 6.23 -2.39 -0.01 1.84 16 33 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 1.49 7.20 -2.39 -0.02 1.47 16 35 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 36 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.03 1.61 6.66 -2.39 -0.02 1.59 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.07 2.25 7.06 -2.39 -0.02 2.24 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 2.01 5.88 -2.39 -0.01 1.99 16 43 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.06 1.68 5.88 -2.39 -0.01 1.66 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 49 H 0.09 2.18 6.83 -2.39 -0.02 2.16 16 50 H 0.11 1.82 8.14 -2.38 -0.02 1.80 16 51 H 0.05 1.79 4.91 -2.39 -0.01 1.78 16 52 H 0.10 2.48 7.12 -2.38 -0.02 2.47 16 Total: -1.00 -73.97 378.22 0.56 -73.41 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: 0.80 Total: 27.74 kcal Atomic # 6 Polarization: -16.45 SS G_CDS: 6.12 Total: -10.33 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -7.93 Total: -103.70 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.25 Total: -32.91 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.81 Total: 45.78 kcal Total: -73.97 0.56 -73.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255163566.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.875 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds