Wall clock time and date at job start Tue Mar 31 2020 15:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46895 * 109.47260 * 294.99440 * 3 2 1 14 14 C 1.46836 * 111.00517 * 299.23858 * 13 3 2 15 15 C 1.53039 * 109.51556 * 174.13391 * 14 13 3 16 16 C 1.53088 * 109.27739 * 59.14154 * 15 14 13 17 17 C 1.52999 * 109.46052 * 62.26484 * 16 15 14 18 18 C 1.53194 * 109.33828 * 181.33909 * 17 16 15 19 19 N 1.46930 * 108.76946 * 305.41376 * 18 17 16 20 20 C 1.34774 * 120.64275 * 233.69845 * 19 18 17 21 21 O 1.21508 * 120.00242 * 179.97438 * 20 19 18 22 22 O 1.34638 * 119.99862 * 359.97438 * 20 19 18 23 23 C 1.45196 * 117.00494 * 180.02562 * 22 20 19 24 24 C 1.46930 * 118.72127 * 53.67192 * 19 18 17 25 25 C 1.52983 * 109.48496 * 182.47220 * 16 15 14 26 26 C 1.53077 * 109.22974 * 302.39243 * 16 15 14 27 27 C 1.46850 * 110.99959 * 174.99886 * 13 3 2 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 32 32 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.46144 * 294.14686 * 14 13 3 35 35 H 1.08996 * 109.46777 * 54.11688 * 14 13 3 36 36 H 1.09001 * 109.50241 * 299.20080 * 15 14 13 37 37 H 1.09002 * 109.51032 * 179.07846 * 15 14 13 38 38 H 1.08996 * 109.49494 * 301.29890 * 17 16 15 39 39 H 1.09000 * 109.49033 * 61.38315 * 17 16 15 40 40 H 1.09000 * 109.58912 * 185.62937 * 18 17 16 41 41 H 1.09000 * 109.70758 * 65.26905 * 18 17 16 42 42 H 1.08994 * 109.47325 * 179.97438 * 23 22 20 43 43 H 1.09007 * 109.46857 * 299.99818 * 23 22 20 44 44 H 1.08998 * 109.47100 * 59.99492 * 23 22 20 45 45 H 1.08998 * 109.58222 * 186.55301 * 24 19 18 46 46 H 1.09006 * 109.58351 * 66.13586 * 24 19 18 47 47 H 1.08999 * 109.48837 * 298.65881 * 25 16 15 48 48 H 1.08996 * 109.49096 * 58.72961 * 25 16 15 49 49 H 1.09001 * 109.49690 * 297.64371 * 26 16 15 50 50 H 1.08998 * 109.50029 * 177.53048 * 26 16 15 51 51 H 1.08999 * 109.46125 * 305.87158 * 27 13 3 52 52 H 1.08996 * 109.46138 * 65.83875 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6516 2.0992 -1.2552 14 6 2.2351 1.4094 -2.4127 15 6 1.6938 2.0287 -3.7032 16 6 2.0508 3.5170 -3.7381 17 6 3.5725 3.6761 -3.7481 18 6 3.9267 5.1665 -3.7492 19 7 3.2442 5.8138 -4.8780 20 6 3.9385 6.5433 -5.7736 21 8 3.3623 7.0732 -6.7029 22 8 5.2706 6.6851 -5.6385 23 6 5.9534 7.4850 -6.6395 24 6 1.7902 5.6499 -5.0119 25 6 1.4589 4.1543 -4.9966 26 6 1.4736 4.2031 -2.4974 27 6 2.0209 3.5204 -1.2418 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.8288 -0.0530 2.9544 34 1 3.3200 1.5122 -2.3877 35 1 1.9697 0.3528 -2.3777 36 1 0.6104 1.9135 -3.7356 37 1 2.1395 1.5274 -4.5624 38 1 3.9935 3.2028 -2.8611 39 1 3.9816 3.2043 -4.6415 40 1 5.0048 5.2858 -3.8570 41 1 3.6002 5.6226 -2.8146 42 1 7.0190 7.5184 -6.4130 43 1 5.8045 7.0401 -7.6235 44 1 5.5490 8.4971 -6.6335 45 1 1.4584 6.0881 -5.9532 46 1 1.2887 6.1438 -4.1796 47 1 1.8847 3.6784 -5.8800 48 1 0.3771 4.0214 -4.9973 49 1 0.3865 4.1238 -2.5104 50 1 1.7623 5.2541 -2.4954 51 1 1.5995 3.9968 -0.3565 52 1 3.1067 3.6133 -1.2219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255165592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:56 Heat of formation + Delta-G solvation = -82.441217 kcal Electronic energy + Delta-G solvation = -30135.806307 eV Core-core repulsion = 26327.951321 eV Total energy + Delta-G solvation = -3807.854986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.94917 -39.71978 -37.35789 -36.27742 -34.65663 -32.45671 -31.45873 -30.94587 -30.31261 -28.66097 -27.57042 -26.05944 -24.35347 -23.54705 -23.00183 -22.20968 -21.46686 -20.29754 -19.01987 -18.54918 -17.51804 -17.15349 -16.59777 -16.15497 -15.45372 -14.95845 -14.70883 -14.48341 -14.24042 -14.19566 -14.07850 -13.80566 -13.58335 -13.22202 -13.01376 -12.77085 -12.39075 -12.22741 -12.04067 -11.85650 -11.66886 -11.57431 -11.40617 -11.22997 -11.12017 -10.92415 -10.90221 -10.83828 -10.64796 -10.55579 -10.51174 -10.18331 -10.04639 -9.92329 -9.65704 -9.59730 -9.28035 -9.03868 -8.70340 -8.36977 -7.05773 -5.99511 -4.13445 2.07680 2.72179 3.23339 3.32683 3.34499 3.80704 4.37466 4.73399 4.80124 4.82561 4.96336 5.03020 5.07757 5.09443 5.23814 5.24994 5.26769 5.34091 5.46685 5.63126 5.66370 5.74232 5.78821 5.85217 5.90461 5.99622 6.09413 6.12492 6.17468 6.19861 6.33031 6.33441 6.42670 6.46741 6.47511 6.52133 6.59523 6.66354 6.76524 6.80340 6.95814 7.11492 7.20594 7.25360 7.35720 7.62165 7.76273 8.00030 8.16759 8.17570 8.35246 8.49212 8.97618 9.54295 10.98912 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.003779 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.116005 B = 7407.703460 C = 8797.748268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 C 0.214 3.786 4 H 0.037 0.963 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.068 3.932 8 N -0.885 5.885 9 Si 0.884 3.116 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.284 1.284 13 N -0.532 5.532 14 C 0.060 3.940 15 C -0.104 4.104 16 C -0.054 4.054 17 C -0.129 4.129 18 C 0.110 3.890 19 N -0.588 5.588 20 C 0.648 3.352 21 O -0.581 6.581 22 O -0.370 6.370 23 C 0.057 3.943 24 C 0.127 3.873 25 C -0.123 4.123 26 C -0.108 4.108 27 C 0.064 3.936 28 H 0.038 0.962 29 H 0.047 0.953 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.091 0.909 33 H 0.260 0.740 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.088 0.912 41 H 0.076 0.924 42 H 0.101 0.899 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.064 0.936 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.060 0.940 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.390 9.158 -13.393 16.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.151 4.151 3 C 0.108 3.892 4 H 0.055 0.945 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.712 3.288 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.256 5.256 14 C -0.069 4.069 15 C -0.142 4.142 16 C -0.054 4.054 17 C -0.167 4.167 18 C -0.012 4.012 19 N -0.328 5.328 20 C 0.403 3.597 21 O -0.471 6.471 22 O -0.284 6.284 23 C -0.038 4.038 24 C 0.006 3.994 25 C -0.161 4.161 26 C -0.146 4.146 27 C -0.065 4.065 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.109 0.891 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.119 0.881 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.093 0.907 47 H 0.082 0.918 48 H 0.097 0.903 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.079 0.921 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.001 9.236 -13.562 16.439 hybrid contribution 2.094 0.009 0.219 2.106 sum 1.093 9.246 -13.342 16.269 Atomic orbital electron populations 1.21705 0.98885 0.98340 1.00579 1.21629 0.92232 0.99323 1.01889 1.19252 0.92937 0.91066 0.85938 0.94508 1.21764 0.92924 1.38036 1.05195 0.92620 1.24904 0.97619 0.95118 0.95757 1.69885 1.34628 1.38472 1.09342 0.86677 0.86447 0.77716 0.77966 1.19954 1.21078 1.21066 1.62368 1.58205 1.01015 1.04037 1.21930 0.97249 0.98175 0.89510 1.21665 1.01126 0.93562 0.97830 1.20499 0.94281 0.96236 0.94365 1.22085 0.96352 0.94882 1.03346 1.21848 0.97557 0.93417 0.88338 1.46982 1.08074 1.51123 1.26606 1.18054 0.80896 0.79001 0.81796 1.90961 1.70014 1.52467 1.33683 1.86257 1.20280 1.68707 1.53146 1.23160 0.95940 0.94342 0.90338 1.21709 0.77178 0.97238 1.03308 1.22000 1.01357 0.94284 0.98441 1.21772 1.00637 0.97959 0.94234 1.21839 0.98401 0.90356 0.95887 0.94263 0.93367 0.95717 0.94842 0.89094 0.92993 0.94417 0.91307 0.91736 0.92839 0.89133 0.91962 0.89407 0.90553 0.88092 0.92009 0.92006 0.89082 0.90683 0.91757 0.90317 0.91652 0.92469 0.92122 0.94426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.80 37.16 0.36 -2.35 16 2 C -0.11 -2.56 5.06 -26.73 -0.14 -2.69 16 3 C 0.21 4.98 1.74 -68.87 -0.12 4.86 16 4 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 5 C -0.54 -13.64 7.18 -34.44 -0.25 -13.89 16 6 H 0.06 1.41 5.84 -52.49 -0.31 1.10 16 7 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 8 N -0.88 -24.18 11.30 55.43 0.63 -23.56 16 9 Si 0.88 20.48 29.54 -169.99 -5.02 15.46 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 N -0.53 -10.25 4.09 -228.09 -0.93 -11.18 16 14 C 0.06 1.06 4.56 -3.84 -0.02 1.04 16 15 C -0.10 -1.47 4.88 -26.67 -0.13 -1.60 16 16 C -0.05 -0.68 0.51 -154.43 -0.08 -0.76 16 17 C -0.13 -1.68 4.31 -26.63 -0.11 -1.80 16 18 C 0.11 1.34 5.98 -3.71 -0.02 1.32 16 19 N -0.59 -7.41 2.97 -178.56 -0.53 -7.94 16 20 C 0.65 9.07 8.43 54.05 0.46 9.53 16 21 O -0.58 -9.41 15.55 -19.28 -0.30 -9.71 16 22 O -0.37 -4.57 9.20 -40.32 -0.37 -4.94 16 23 C 0.06 0.50 10.56 101.05 1.07 1.57 16 24 C 0.13 1.43 5.97 -3.71 -0.02 1.41 16 25 C -0.12 -1.35 4.91 -26.64 -0.13 -1.48 16 26 C -0.11 -1.47 4.13 -26.67 -0.11 -1.58 16 27 C 0.06 1.11 4.87 -3.83 -0.02 1.09 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.91 7.75 -51.93 -0.40 0.50 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.03 0.75 6.05 -51.93 -0.31 0.43 16 32 H 0.09 2.35 5.96 -51.93 -0.31 2.04 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 34 H 0.04 0.73 4.97 -51.93 -0.26 0.47 16 35 H 0.07 1.30 5.93 -51.93 -0.31 0.99 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.09 1.38 4.92 -51.93 -0.26 1.13 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.09 1.05 6.93 -51.93 -0.36 0.69 16 41 H 0.08 0.92 6.66 -51.93 -0.35 0.57 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.09 1.08 7.00 -51.93 -0.36 0.71 16 46 H 0.08 0.78 6.77 -51.93 -0.35 0.43 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.06 0.71 5.02 -51.93 -0.26 0.45 16 51 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 52 H 0.04 0.71 5.36 -51.93 -0.28 0.43 16 LS Contribution 375.35 15.07 5.66 5.66 Total: -1.00 -28.48 375.35 -8.97 -37.45 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -8.74 Total: 2.39 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 0.64 Total: -3.62 kcal Atomic # 7 Polarization: -41.84 SS G_CDS: -0.84 Total: -42.67 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.67 Total: -14.65 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -28.48 -8.97 -37.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.993 kcal (2) G-P(sol) polarization free energy of solvation -28.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds