Wall clock time and date at job start Tue Mar 31 2020 15:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47241 * 2 1 4 4 H 1.08994 * 109.47269 * 55.00202 * 3 2 1 5 5 C 1.50702 * 109.46842 * 174.99958 * 3 2 1 6 6 H 1.08002 * 120.00299 * 120.00437 * 5 3 2 7 7 C 1.37884 * 119.99942 * 299.71996 * 5 3 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 3 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 3 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46895 * 109.47260 * 294.99440 * 3 2 1 14 14 C 1.46836 * 111.00517 * 299.23858 * 13 3 2 15 15 C 1.53039 * 109.51556 * 174.13391 * 14 13 3 16 16 C 1.53088 * 109.27739 * 59.14154 * 15 14 13 17 17 C 1.52999 * 109.46052 * 62.26484 * 16 15 14 18 18 C 1.53194 * 109.33828 * 181.33909 * 17 16 15 19 19 N 1.46930 * 108.76946 * 305.41376 * 18 17 16 20 20 C 1.34774 * 120.64275 * 233.69845 * 19 18 17 21 21 O 1.21508 * 120.00242 * 179.97438 * 20 19 18 22 22 O 1.34638 * 119.99862 * 359.97438 * 20 19 18 23 23 C 1.45196 * 117.00494 * 180.02562 * 22 20 19 24 24 C 1.46930 * 118.72127 * 53.67192 * 19 18 17 25 25 C 1.52983 * 109.48496 * 182.47220 * 16 15 14 26 26 C 1.53077 * 109.22974 * 302.39243 * 16 15 14 27 27 C 1.46850 * 110.99959 * 174.99886 * 13 3 2 28 28 H 1.09003 * 109.47374 * 300.00289 * 1 2 3 29 29 H 1.09003 * 109.46563 * 59.99857 * 1 2 3 30 30 H 1.08991 * 109.47795 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46905 * 239.99963 * 2 1 3 32 32 H 1.09003 * 109.46563 * 120.00143 * 2 1 3 33 33 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 34 34 H 1.09006 * 109.46144 * 294.14686 * 14 13 3 35 35 H 1.08996 * 109.46777 * 54.11688 * 14 13 3 36 36 H 1.09001 * 109.50241 * 299.20080 * 15 14 13 37 37 H 1.09002 * 109.51032 * 179.07846 * 15 14 13 38 38 H 1.08996 * 109.49494 * 301.29890 * 17 16 15 39 39 H 1.09000 * 109.49033 * 61.38315 * 17 16 15 40 40 H 1.09000 * 109.58912 * 185.62937 * 18 17 16 41 41 H 1.09000 * 109.70758 * 65.26905 * 18 17 16 42 42 H 1.08994 * 109.47325 * 179.97438 * 23 22 20 43 43 H 1.09007 * 109.46857 * 299.99818 * 23 22 20 44 44 H 1.08998 * 109.47100 * 59.99492 * 23 22 20 45 45 H 1.08998 * 109.58222 * 186.55301 * 24 19 18 46 46 H 1.09006 * 109.58351 * 66.13586 * 24 19 18 47 47 H 1.08999 * 109.48837 * 298.65881 * 25 16 15 48 48 H 1.08996 * 109.49096 * 58.72961 * 25 16 15 49 49 H 1.09001 * 109.49690 * 297.64371 * 26 16 15 50 50 H 1.08998 * 109.50029 * 177.53048 * 26 16 15 51 51 H 1.08999 * 109.46125 * 305.87158 * 27 13 3 52 52 H 1.08996 * 109.46138 * 65.83875 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4441 0.1238 6 1 4.1473 1.8887 -0.6522 7 6 4.1430 0.8833 1.2308 8 7 3.4059 0.3419 2.1758 9 14 6.0043 0.8923 1.3879 10 1 6.5982 1.5566 0.2000 11 1 6.3940 1.6325 2.6150 12 1 6.5007 -0.5047 1.4741 13 7 1.6516 2.0992 -1.2552 14 6 2.2351 1.4094 -2.4127 15 6 1.6938 2.0287 -3.7032 16 6 2.0508 3.5170 -3.7381 17 6 3.5725 3.6761 -3.7481 18 6 3.9267 5.1665 -3.7492 19 7 3.2442 5.8138 -4.8780 20 6 3.9385 6.5433 -5.7736 21 8 3.3623 7.0732 -6.7029 22 8 5.2706 6.6851 -5.6385 23 6 5.9534 7.4850 -6.6395 24 6 1.7902 5.6499 -5.0119 25 6 1.4589 4.1543 -4.9966 26 6 1.4736 4.2031 -2.4974 27 6 2.0209 3.5204 -1.2418 28 1 -0.3634 0.5139 0.8900 29 1 -0.3632 0.5139 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 3.8288 -0.0530 2.9544 34 1 3.3200 1.5122 -2.3877 35 1 1.9697 0.3528 -2.3777 36 1 0.6104 1.9135 -3.7356 37 1 2.1395 1.5274 -4.5624 38 1 3.9935 3.2028 -2.8611 39 1 3.9816 3.2043 -4.6415 40 1 5.0048 5.2858 -3.8570 41 1 3.6002 5.6226 -2.8146 42 1 7.0190 7.5184 -6.4130 43 1 5.8045 7.0401 -7.6235 44 1 5.5490 8.4971 -6.6335 45 1 1.4584 6.0881 -5.9532 46 1 1.2887 6.1438 -4.1796 47 1 1.8847 3.6784 -5.8800 48 1 0.3771 4.0214 -4.9973 49 1 0.3865 4.1238 -2.5104 50 1 1.7623 5.2541 -2.4954 51 1 1.5995 3.9968 -0.3565 52 1 3.1067 3.6133 -1.2219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255165592.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:55 Heat of formation + Delta-G solvation = -98.501682 kcal Electronic energy + Delta-G solvation = -30136.502741 eV Core-core repulsion = 26327.951321 eV Total energy + Delta-G solvation = -3808.551420 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.99140 -40.86756 -38.66379 -37.39991 -36.02351 -34.13585 -32.99398 -32.07542 -31.61877 -29.92497 -28.57658 -27.63424 -25.63775 -24.79052 -24.38677 -23.51155 -22.73685 -21.50226 -20.65692 -19.64098 -18.77286 -18.16109 -17.94682 -17.49530 -17.09524 -16.21735 -15.94519 -15.70379 -15.46775 -15.29791 -15.18506 -15.00464 -14.94989 -14.68675 -14.43871 -13.95276 -13.65732 -13.43028 -13.25164 -13.16253 -13.00426 -12.95893 -12.81553 -12.76139 -12.50435 -12.39770 -12.23049 -12.16014 -11.84412 -11.83051 -11.79970 -11.62240 -11.58241 -11.41037 -11.16519 -10.95755 -10.86910 -10.69574 -10.37653 -9.72105 -8.75934 -7.96873 -6.20545 1.17521 1.36445 1.40622 1.48649 1.67860 2.42151 2.89733 3.19849 3.50367 3.76271 3.79666 3.82858 4.11626 4.19644 4.31943 4.34065 4.35662 4.41396 4.50126 4.56491 4.59098 4.66232 4.69364 4.71482 4.78230 4.79696 4.82582 4.87963 4.94971 4.95855 5.04533 5.06657 5.14976 5.17227 5.22914 5.28009 5.34265 5.40068 5.41033 5.45330 5.47529 5.51592 5.59874 5.66094 5.71166 5.86322 6.13947 6.24469 6.29259 6.48491 6.83319 7.03673 7.16621 7.50601 8.95959 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015049 B = 0.003779 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.116005 B = 7407.703460 C = 8797.748268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.107 4.107 3 C 0.221 3.779 4 H 0.000 1.000 5 C -0.542 4.542 6 H 0.052 0.948 7 C 0.021 3.979 8 N -0.912 5.912 9 Si 0.940 3.060 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.527 5.527 14 C 0.063 3.937 15 C -0.095 4.095 16 C -0.049 4.049 17 C -0.123 4.123 18 C 0.116 3.884 19 N -0.586 5.586 20 C 0.644 3.356 21 O -0.607 6.607 22 O -0.377 6.377 23 C 0.050 3.950 24 C 0.125 3.875 25 C -0.111 4.111 26 C -0.096 4.096 27 C 0.064 3.936 28 H 0.030 0.970 29 H 0.059 0.941 30 H 0.042 0.958 31 H 0.033 0.967 32 H 0.058 0.942 33 H 0.259 0.741 34 H 0.018 0.982 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.132 0.868 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.064 0.936 48 H 0.098 0.902 49 H 0.073 0.927 50 H 0.074 0.926 51 H 0.046 0.954 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.547 9.962 -15.230 18.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.146 4.146 3 C 0.113 3.887 4 H 0.018 0.982 5 C -0.581 4.581 6 H 0.070 0.930 7 C -0.178 4.178 8 N -0.552 5.552 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.251 5.251 14 C -0.065 4.065 15 C -0.132 4.132 16 C -0.049 4.049 17 C -0.161 4.161 18 C -0.006 4.006 19 N -0.325 5.325 20 C 0.399 3.601 21 O -0.500 6.500 22 O -0.291 6.291 23 C -0.044 4.044 24 C 0.004 3.996 25 C -0.149 4.149 26 C -0.133 4.133 27 C -0.064 4.064 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.150 0.850 43 H 0.079 0.921 44 H 0.080 0.920 45 H 0.107 0.893 46 H 0.106 0.894 47 H 0.083 0.917 48 H 0.116 0.884 49 H 0.092 0.908 50 H 0.092 0.908 51 H 0.064 0.936 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.151 10.046 -15.409 18.430 hybrid contribution 2.184 -0.225 0.792 2.334 sum 1.033 9.820 -14.617 17.640 Atomic orbital electron populations 1.21559 0.96377 0.99616 1.00682 1.21470 0.94438 0.98478 1.00207 1.18998 0.91615 0.91293 0.86750 0.98235 1.22019 0.94182 1.37123 1.04789 0.92999 1.25572 1.01271 0.95217 0.95763 1.70015 1.35994 1.39425 1.09781 0.85790 0.82139 0.77529 0.77871 1.19385 1.21034 1.21010 1.62326 1.58023 1.01874 1.02904 1.21917 0.96184 0.97726 0.90658 1.21590 1.01490 0.94272 0.95886 1.20454 0.94029 0.95410 0.95003 1.21980 0.96587 0.95335 1.02191 1.21774 0.97807 0.92664 0.88320 1.47079 1.08595 1.50624 1.26249 1.18233 0.81382 0.78884 0.81608 1.90939 1.70636 1.53626 1.34761 1.86263 1.19490 1.69146 1.54174 1.23466 0.97292 0.93856 0.89783 1.21819 0.76501 0.97485 1.03748 1.21905 1.02368 0.93692 0.96965 1.21677 1.00896 0.98418 0.92339 1.21872 0.97531 0.89425 0.97607 0.95067 0.92206 0.93854 0.94824 0.92343 0.93166 0.96372 0.92613 0.90870 0.91361 0.91605 0.91756 0.89208 0.90281 0.85001 0.92075 0.91951 0.89338 0.89420 0.91705 0.88391 0.90803 0.90771 0.93588 0.96065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.80 71.98 0.71 -4.16 16 2 C -0.11 -4.98 5.06 30.59 0.15 -4.82 16 3 C 0.22 10.54 1.74 44.17 0.08 10.62 16 4 H 0.00 -0.02 8.08 -2.39 -0.02 -0.03 16 5 C -0.54 -28.06 7.18 25.60 0.18 -27.88 16 6 H 0.05 2.68 5.84 -2.91 -0.02 2.66 16 7 C 0.02 1.14 5.30 84.66 0.45 1.58 16 8 N -0.91 -51.32 11.30 21.45 0.24 -51.08 16 9 Si 0.94 42.65 29.54 68.60 2.03 44.68 16 10 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 N -0.53 -20.33 4.09 -875.55 -3.58 -23.91 16 14 C 0.06 2.22 4.56 86.33 0.39 2.61 16 15 C -0.09 -2.45 4.88 30.64 0.15 -2.30 16 16 C -0.05 -1.12 0.51 -52.13 -0.03 -1.15 16 17 C -0.12 -3.03 4.31 30.66 0.13 -2.90 16 18 C 0.12 2.63 5.98 86.36 0.52 3.15 16 19 N -0.59 -13.53 2.97 -949.24 -2.82 -16.35 16 20 C 0.64 17.00 8.43 129.79 1.09 18.09 16 21 O -0.61 -18.86 15.55 19.82 0.31 -18.55 16 22 O -0.38 -8.70 9.20 -55.47 -0.51 -9.21 16 23 C 0.05 0.79 10.56 113.37 1.20 1.98 16 24 C 0.12 2.47 5.97 86.36 0.52 2.98 16 25 C -0.11 -2.07 4.91 30.65 0.15 -1.92 16 26 C -0.10 -2.39 4.13 30.63 0.13 -2.26 16 27 C 0.06 2.22 4.87 86.33 0.42 2.64 16 28 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 2.17 7.75 -2.39 -0.02 2.15 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.52 6.05 -2.39 -0.01 1.50 16 32 H 0.06 3.11 5.96 -2.39 -0.01 3.09 16 33 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 34 H 0.02 0.71 4.97 -2.38 -0.01 0.70 16 35 H 0.06 2.08 5.93 -2.39 -0.01 2.07 16 36 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 37 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.99 4.92 -2.39 -0.01 1.98 16 39 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 2.01 6.93 -2.39 -0.02 1.99 16 41 H 0.08 1.76 6.66 -2.39 -0.02 1.74 16 42 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 44 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.09 1.87 7.00 -2.39 -0.02 1.85 16 46 H 0.09 1.53 6.77 -2.38 -0.02 1.52 16 47 H 0.06 1.25 8.14 -2.39 -0.02 1.24 16 48 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.07 1.64 5.02 -2.39 -0.01 1.62 16 51 H 0.05 1.70 8.08 -2.39 -0.02 1.68 16 52 H 0.02 0.81 5.36 -2.39 -0.01 0.79 16 Total: -1.00 -62.56 375.35 2.80 -59.75 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.91 Total: 18.38 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 6.24 Total: -3.72 kcal Atomic # 7 Polarization: -85.17 SS G_CDS: -6.16 Total: -91.34 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.20 Total: -27.76 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -62.56 2.80 -59.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255165592.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.749 kcal (2) G-P(sol) polarization free energy of solvation -62.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds