Wall clock time and date at job start Tue Mar 31 2020 15:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47051 * 2 1 4 4 H 1.08997 * 109.47498 * 55.00114 * 3 2 1 5 5 C 1.50699 * 109.47270 * 174.99932 * 3 2 1 6 6 H 1.08000 * 120.00210 * 114.51442 * 5 3 2 7 7 C 1.37882 * 119.99825 * 294.52592 * 5 3 2 8 8 N 1.31515 * 119.99828 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 119.99849 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47329 * 90.00793 * 9 7 5 11 11 H 1.48508 * 109.47067 * 210.00277 * 9 7 5 12 12 H 1.48502 * 109.47623 * 330.00379 * 9 7 5 13 13 N 1.46903 * 109.47315 * 294.99904 * 3 2 1 14 14 C 1.47634 * 111.00004 * 77.25643 * 13 3 2 15 15 C 1.52662 * 87.79440 * 138.04422 * 14 13 3 16 16 C 1.47635 * 111.00107 * 173.43551 * 13 3 2 17 17 C 1.53551 * 115.42074 * 219.03431 * 15 14 13 18 18 C 1.55351 * 102.66620 * 206.35090 * 17 15 14 19 19 C 1.54985 * 101.69106 * 34.80589 * 18 17 15 20 20 N 1.46173 * 116.07429 * 90.85238 * 15 14 13 21 21 C 1.34778 * 125.85002 * 310.38105 * 20 15 14 22 22 O 1.21518 * 119.99680 * 0.02562 * 21 20 15 23 23 O 1.34629 * 120.00084 * 180.02562 * 21 20 15 24 24 C 1.45202 * 117.00206 * 180.02562 * 23 21 20 25 25 C 1.53003 * 109.47236 * 59.99723 * 24 23 21 26 26 C 1.52997 * 109.46871 * 179.97438 * 24 23 21 27 27 C 1.52999 * 109.46729 * 299.99735 * 24 23 21 28 28 H 1.09002 * 109.46708 * 59.99840 * 1 2 3 29 29 H 1.09000 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46851 * 300.00127 * 1 2 3 31 31 H 1.08997 * 109.46851 * 239.99873 * 2 1 3 32 32 H 1.09002 * 109.46708 * 120.00160 * 2 1 3 33 33 H 0.97001 * 119.99747 * 179.97438 * 8 7 5 34 34 H 1.09007 * 113.50657 * 252.78877 * 14 13 3 35 35 H 1.08994 * 113.51038 * 23.29303 * 14 13 3 36 36 H 1.09002 * 113.50781 * 336.64091 * 16 13 3 37 37 H 1.08996 * 113.51158 * 107.14535 * 16 13 3 38 38 H 1.09002 * 110.77352 * 324.64550 * 17 15 14 39 39 H 1.09001 * 110.77415 * 88.05458 * 17 15 14 40 40 H 1.08996 * 110.98147 * 276.70484 * 18 17 15 41 41 H 1.08996 * 110.98415 * 152.90536 * 18 17 15 42 42 H 1.09005 * 110.35643 * 204.57964 * 19 18 17 43 43 H 1.08998 * 110.36183 * 82.28637 * 19 18 17 44 44 H 1.08999 * 109.47250 * 59.99953 * 25 24 23 45 45 H 1.08992 * 109.47284 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46585 * 300.00606 * 25 24 23 47 47 H 1.08998 * 109.47832 * 60.00296 * 26 24 23 48 48 H 1.09003 * 109.46665 * 179.97438 * 26 24 23 49 49 H 1.09002 * 109.47628 * 299.99196 * 26 24 23 50 50 H 1.09001 * 109.47290 * 60.00310 * 27 24 23 51 51 H 1.09003 * 109.46867 * 179.97438 * 27 24 23 52 52 H 1.08995 * 109.47038 * 299.99742 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1505 1.8081 -0.6908 7 6 4.1391 0.9812 1.2771 8 7 5.4498 0.9824 1.3850 9 14 3.0865 0.3523 2.6863 10 1 2.8534 -1.1046 2.5181 11 1 3.7855 0.5963 3.9736 12 1 1.7837 1.0651 2.6876 13 7 1.6514 2.0992 -1.2552 14 6 0.2268 2.4859 -1.2311 15 6 0.6348 3.8053 -1.8819 16 6 1.9890 3.5362 -1.2271 17 6 -0.1083 5.0488 -1.3728 18 6 -0.0295 6.0138 -2.5877 19 6 -0.1264 5.0274 -3.7791 20 7 0.6225 3.8316 -3.3433 21 6 1.1958 2.9202 -4.1540 22 8 1.7882 1.9716 -3.6788 23 8 1.1122 3.0609 -5.4903 24 6 1.7526 2.0413 -6.3019 25 6 1.1309 0.6780 -5.9923 26 6 1.5522 2.3681 -7.7830 27 6 3.2490 2.0031 -5.9854 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8699 0.6570 2.1965 34 1 -0.4033 1.8640 -1.8669 35 1 -0.1748 2.6034 -0.2246 36 1 2.0723 3.9436 -0.2195 37 1 2.8386 3.7957 -1.8586 38 1 -1.1450 4.8097 -1.1357 39 1 0.3989 5.4749 -0.5071 40 1 0.9201 6.5489 -2.6002 41 1 -0.8681 6.7101 -2.5882 42 1 0.3334 5.4598 -4.6678 43 1 -1.1676 4.7719 -3.9762 44 1 0.0648 0.7052 -6.2177 45 1 1.6119 -0.0874 -6.6011 46 1 1.2732 0.4450 -4.9370 47 1 1.9949 3.3394 -8.0040 48 1 2.0334 1.6029 -8.3922 49 1 0.4861 2.3950 -8.0083 50 1 3.3914 1.7700 -4.9302 51 1 3.7297 1.2374 -6.5943 52 1 3.6919 2.9743 -6.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:59 Heat of formation + Delta-G solvation = -15.493612 kcal Electronic energy + Delta-G solvation = -30872.011806 eV Core-core repulsion = 27067.059886 eV Total energy + Delta-G solvation = -3804.951920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05095 -39.68776 -37.09289 -35.98907 -33.98500 -33.45850 -31.83046 -31.32531 -28.94027 -27.33194 -27.19146 -27.04881 -25.10453 -24.19411 -22.99799 -21.91476 -21.62866 -19.74808 -19.35800 -18.30691 -17.09324 -16.75436 -16.20631 -16.04300 -15.40272 -15.29969 -14.60093 -14.42074 -14.14096 -14.06388 -13.53881 -13.31449 -13.15372 -12.93896 -12.76474 -12.51913 -12.42605 -12.26842 -12.16358 -12.02795 -11.87845 -11.73372 -11.63440 -11.55913 -11.32320 -11.25874 -11.19813 -11.09530 -11.01766 -10.74106 -10.32066 -10.09422 -10.01498 -9.83401 -9.73875 -9.40470 -9.20470 -8.91133 -8.47494 -8.29526 -7.55658 -5.99504 -3.96767 2.34784 3.30872 3.35094 3.39637 3.40998 4.04350 4.45685 4.53347 4.62153 4.75110 4.84945 4.87941 5.01480 5.03973 5.06873 5.25498 5.30182 5.48153 5.54343 5.61222 5.63674 5.73193 5.73985 5.78590 5.82093 5.83739 5.90123 5.95421 5.97459 6.01761 6.04620 6.08358 6.08782 6.16948 6.21129 6.25839 6.47058 6.51240 6.60173 6.64065 6.67829 6.71682 6.80260 6.96057 6.97492 7.24103 7.55705 7.88136 7.89402 8.12365 8.73073 8.90121 9.11814 9.63441 11.13805 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004744 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.590890 B = 5901.033877 C = 6827.799044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.114 4.114 3 C 0.151 3.849 4 H 0.002 0.998 5 C -0.496 4.496 6 H 0.079 0.921 7 C 0.070 3.930 8 N -0.901 5.901 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.267 1.267 13 N -0.408 5.408 14 C -0.008 4.008 15 C 0.142 3.858 16 C 0.021 3.979 17 C -0.115 4.115 18 C -0.132 4.132 19 C 0.108 3.892 20 N -0.581 5.581 21 C 0.648 3.352 22 O -0.495 6.495 23 O -0.374 6.374 24 C 0.140 3.860 25 C -0.183 4.183 26 C -0.138 4.138 27 C -0.184 4.184 28 H 0.064 0.936 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.262 0.738 34 H 0.076 0.924 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.053 0.947 45 H 0.065 0.935 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.076 0.924 49 H 0.062 0.938 50 H 0.096 0.904 51 H 0.065 0.935 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.691 8.410 -13.435 20.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.152 4.152 3 C 0.042 3.958 4 H 0.019 0.981 5 C -0.534 4.534 6 H 0.097 0.903 7 C -0.131 4.131 8 N -0.540 5.540 9 Si 0.708 3.292 10 H -0.204 1.204 11 H -0.223 1.223 12 H -0.192 1.192 13 N -0.130 5.130 14 C -0.139 4.139 15 C 0.057 3.943 16 C -0.109 4.109 17 C -0.154 4.154 18 C -0.170 4.170 19 C -0.015 4.015 20 N -0.323 5.323 21 C 0.402 3.598 22 O -0.377 6.377 23 O -0.290 6.290 24 C 0.103 3.897 25 C -0.240 4.240 26 C -0.195 4.195 27 C -0.241 4.241 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.084 0.916 46 H 0.113 0.887 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.081 0.919 50 H 0.115 0.885 51 H 0.084 0.916 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.970 7.442 -13.813 20.357 hybrid contribution -0.659 -0.135 1.570 1.708 sum -13.629 7.308 -12.244 19.725 Atomic orbital electron populations 1.22199 0.98607 1.00133 1.01217 1.21766 0.92758 0.99619 1.01102 1.20327 0.97141 0.91247 0.87041 0.98062 1.20919 0.88770 1.41624 1.02071 0.90260 1.24923 0.94695 0.95503 0.98024 1.69898 1.08683 1.47693 1.27759 0.86962 0.80836 0.79589 0.81861 1.20439 1.22325 1.19162 1.69315 1.01536 1.08821 1.33321 1.24260 0.96449 0.94176 0.98979 1.21650 0.98675 0.95491 0.78515 1.23819 0.95578 0.92323 0.99220 1.22470 1.00820 0.93899 0.98196 1.22810 1.02896 0.97069 0.94240 1.22288 0.96176 0.85271 0.97786 1.46479 1.56485 1.24830 1.04456 1.17638 0.79574 0.82377 0.80248 1.91182 1.42527 1.29460 1.74574 1.86233 1.73570 1.52070 1.17155 1.21929 0.92573 0.86238 0.88962 1.22506 1.00198 0.95543 1.05733 1.21832 1.02658 1.02557 0.92468 1.22517 0.93748 1.01929 1.05917 0.91703 0.94398 0.94234 0.91513 0.93534 0.92814 0.90572 0.91562 0.91014 0.90642 0.90294 0.89480 0.90429 0.90041 0.90611 0.91779 0.92749 0.91594 0.88715 0.91798 0.90473 0.91872 0.88527 0.91599 0.92613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.12 8.83 37.16 0.33 -2.80 16 2 C -0.11 -2.66 5.18 -26.73 -0.14 -2.80 16 3 C 0.15 3.68 0.92 -68.87 -0.06 3.62 16 4 H 0.00 0.05 6.24 -51.93 -0.32 -0.28 16 5 C -0.50 -14.35 8.67 -34.44 -0.30 -14.65 16 6 H 0.08 2.57 8.02 -52.49 -0.42 2.15 16 7 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 9 Si 0.88 22.35 24.69 -169.99 -4.20 18.16 16 10 H -0.28 -6.98 6.86 56.52 0.39 -6.59 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.27 -6.48 6.39 56.52 0.36 -6.12 16 13 N -0.41 -8.85 3.74 -237.71 -0.89 -9.74 16 14 C -0.01 -0.14 4.37 -7.13 -0.03 -0.18 16 15 C 0.14 2.20 1.57 -132.69 -0.21 1.99 16 16 C 0.02 0.41 5.99 -7.05 -0.04 0.37 16 17 C -0.12 -1.28 6.34 -25.20 -0.16 -1.44 16 18 C -0.13 -1.21 7.09 -24.44 -0.17 -1.38 16 19 C 0.11 1.17 6.95 -2.35 -0.02 1.16 16 20 N -0.58 -8.76 3.20 -163.21 -0.52 -9.28 16 21 C 0.65 11.16 7.68 54.06 0.41 11.57 16 22 O -0.50 -10.12 9.25 -19.29 -0.18 -10.30 16 23 O -0.37 -5.63 9.44 -40.29 -0.38 -6.01 16 24 C 0.14 1.85 1.13 -90.62 -0.10 1.75 16 25 C -0.18 -2.45 8.37 37.16 0.31 -2.14 16 26 C -0.14 -1.34 8.85 37.16 0.33 -1.01 16 27 C -0.18 -2.60 8.37 37.16 0.31 -2.29 16 28 H 0.06 1.18 4.61 -51.93 -0.24 0.94 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.72 8.13 -51.93 -0.42 0.29 16 31 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 32 H 0.05 1.13 4.01 -51.93 -0.21 0.93 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.08 1.35 6.77 -51.93 -0.35 1.00 16 35 H 0.07 1.11 7.23 -51.93 -0.38 0.74 16 36 H 0.07 1.41 7.63 -51.93 -0.40 1.01 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.08 0.77 8.13 -51.93 -0.42 0.35 16 39 H 0.09 0.94 7.82 -51.93 -0.41 0.53 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.08 0.78 8.06 -51.93 -0.42 0.37 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.09 1.60 5.88 -51.93 -0.31 1.29 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.10 1.74 5.88 -51.93 -0.31 1.44 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 382.94 15.07 5.77 5.77 Total: -1.00 -33.20 382.94 -8.54 -41.73 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -9.28 Total: 3.37 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 0.36 Total: -6.27 kcal Atomic # 7 Polarization: -45.81 SS G_CDS: -0.64 Total: -46.44 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -0.56 Total: -16.31 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.20 Total: 18.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.20 -8.54 -41.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.240 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds