Wall clock time and date at job start Tue Mar 31 2020 15:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52992 * 109.47051 * 2 1 4 4 H 1.08997 * 109.47498 * 55.00114 * 3 2 1 5 5 C 1.50699 * 109.47270 * 174.99932 * 3 2 1 6 6 H 1.08000 * 120.00210 * 114.51442 * 5 3 2 7 7 C 1.37882 * 119.99825 * 294.52592 * 5 3 2 8 8 N 1.31515 * 119.99828 * 179.97438 * 7 5 3 9 9 Si 1.86794 * 119.99849 * 359.97438 * 7 5 3 10 10 H 1.48502 * 109.47329 * 90.00793 * 9 7 5 11 11 H 1.48508 * 109.47067 * 210.00277 * 9 7 5 12 12 H 1.48502 * 109.47623 * 330.00379 * 9 7 5 13 13 N 1.46903 * 109.47315 * 294.99904 * 3 2 1 14 14 C 1.47634 * 111.00004 * 77.25643 * 13 3 2 15 15 C 1.52662 * 87.79440 * 138.04422 * 14 13 3 16 16 C 1.47635 * 111.00107 * 173.43551 * 13 3 2 17 17 C 1.53551 * 115.42074 * 219.03431 * 15 14 13 18 18 C 1.55351 * 102.66620 * 206.35090 * 17 15 14 19 19 C 1.54985 * 101.69106 * 34.80589 * 18 17 15 20 20 N 1.46173 * 116.07429 * 90.85238 * 15 14 13 21 21 C 1.34778 * 125.85002 * 310.38105 * 20 15 14 22 22 O 1.21518 * 119.99680 * 0.02562 * 21 20 15 23 23 O 1.34629 * 120.00084 * 180.02562 * 21 20 15 24 24 C 1.45202 * 117.00206 * 180.02562 * 23 21 20 25 25 C 1.53003 * 109.47236 * 59.99723 * 24 23 21 26 26 C 1.52997 * 109.46871 * 179.97438 * 24 23 21 27 27 C 1.52999 * 109.46729 * 299.99735 * 24 23 21 28 28 H 1.09002 * 109.46708 * 59.99840 * 1 2 3 29 29 H 1.09000 * 109.46918 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46851 * 300.00127 * 1 2 3 31 31 H 1.08997 * 109.46851 * 239.99873 * 2 1 3 32 32 H 1.09002 * 109.46708 * 120.00160 * 2 1 3 33 33 H 0.97001 * 119.99747 * 179.97438 * 8 7 5 34 34 H 1.09007 * 113.50657 * 252.78877 * 14 13 3 35 35 H 1.08994 * 113.51038 * 23.29303 * 14 13 3 36 36 H 1.09002 * 113.50781 * 336.64091 * 16 13 3 37 37 H 1.08996 * 113.51158 * 107.14535 * 16 13 3 38 38 H 1.09002 * 110.77352 * 324.64550 * 17 15 14 39 39 H 1.09001 * 110.77415 * 88.05458 * 17 15 14 40 40 H 1.08996 * 110.98147 * 276.70484 * 18 17 15 41 41 H 1.08996 * 110.98415 * 152.90536 * 18 17 15 42 42 H 1.09005 * 110.35643 * 204.57964 * 19 18 17 43 43 H 1.08998 * 110.36183 * 82.28637 * 19 18 17 44 44 H 1.08999 * 109.47250 * 59.99953 * 25 24 23 45 45 H 1.08992 * 109.47284 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46585 * 300.00606 * 25 24 23 47 47 H 1.08998 * 109.47832 * 60.00296 * 26 24 23 48 48 H 1.09003 * 109.46665 * 179.97438 * 26 24 23 49 49 H 1.09002 * 109.47628 * 299.99196 * 26 24 23 50 50 H 1.09001 * 109.47290 * 60.00310 * 27 24 23 51 51 H 1.09003 * 109.46867 * 179.97438 * 27 24 23 52 52 H 1.08995 * 109.47038 * 299.99742 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1505 1.8081 -0.6908 7 6 4.1391 0.9812 1.2771 8 7 5.4498 0.9824 1.3850 9 14 3.0865 0.3523 2.6863 10 1 2.8534 -1.1046 2.5181 11 1 3.7855 0.5963 3.9736 12 1 1.7837 1.0651 2.6876 13 7 1.6514 2.0992 -1.2552 14 6 0.2268 2.4859 -1.2311 15 6 0.6348 3.8053 -1.8819 16 6 1.9890 3.5362 -1.2271 17 6 -0.1083 5.0488 -1.3728 18 6 -0.0295 6.0138 -2.5877 19 6 -0.1264 5.0274 -3.7791 20 7 0.6225 3.8316 -3.3433 21 6 1.1958 2.9202 -4.1540 22 8 1.7882 1.9716 -3.6788 23 8 1.1122 3.0609 -5.4903 24 6 1.7526 2.0413 -6.3019 25 6 1.1309 0.6780 -5.9923 26 6 1.5522 2.3681 -7.7830 27 6 3.2490 2.0031 -5.9854 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8699 0.6570 2.1965 34 1 -0.4033 1.8640 -1.8669 35 1 -0.1748 2.6034 -0.2246 36 1 2.0723 3.9436 -0.2195 37 1 2.8386 3.7957 -1.8586 38 1 -1.1450 4.8097 -1.1357 39 1 0.3989 5.4749 -0.5071 40 1 0.9201 6.5489 -2.6002 41 1 -0.8681 6.7101 -2.5882 42 1 0.3334 5.4598 -4.6678 43 1 -1.1676 4.7719 -3.9762 44 1 0.0648 0.7052 -6.2177 45 1 1.6119 -0.0874 -6.6011 46 1 1.2732 0.4450 -4.9370 47 1 1.9949 3.3394 -8.0040 48 1 2.0334 1.6029 -8.3922 49 1 0.4861 2.3950 -8.0083 50 1 3.3914 1.7700 -4.9302 51 1 3.7297 1.2374 -6.5943 52 1 3.6919 2.9743 -6.2060 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:58 Heat of formation + Delta-G solvation = -38.473264 kcal Electronic energy + Delta-G solvation = -30873.008278 eV Core-core repulsion = 27067.059886 eV Total energy + Delta-G solvation = -3805.948393 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.37714 -40.98115 -38.44976 -37.24018 -35.58201 -34.81637 -33.90804 -32.36242 -30.56125 -28.56665 -28.33596 -28.23393 -26.65513 -25.59364 -24.62188 -23.33516 -22.70053 -21.16442 -20.86252 -19.57107 -18.99427 -18.26487 -17.42692 -17.31533 -16.92683 -16.64337 -16.12980 -15.87906 -15.60059 -15.22181 -14.92697 -14.74014 -14.59455 -14.24388 -13.98747 -13.95822 -13.81211 -13.61289 -13.50641 -13.25462 -13.15157 -13.01915 -12.91350 -12.79074 -12.76258 -12.63576 -12.48905 -12.27065 -12.10451 -12.06953 -11.98067 -11.76821 -11.58562 -11.30957 -11.23272 -11.01001 -11.00159 -10.72844 -10.61779 -9.54889 -9.21724 -8.30769 -6.33645 1.18788 1.27248 1.29420 1.41003 2.03346 2.29136 2.95411 3.02386 3.35384 3.46275 3.66884 3.82486 3.84374 3.85317 3.99754 4.04551 4.24353 4.33150 4.35919 4.42500 4.51946 4.55690 4.58428 4.62886 4.66289 4.68553 4.77867 4.78847 4.80104 4.84684 4.86699 4.88851 4.92638 4.95014 5.02078 5.06972 5.10042 5.14874 5.17546 5.26811 5.33919 5.36429 5.39563 5.41330 5.55804 5.65733 5.73915 5.84706 6.14724 6.65015 6.70803 6.73052 7.31157 7.62180 8.86958 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004744 C = 0.004100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.590890 B = 5901.033877 C = 6827.799044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.114 4.114 3 C 0.159 3.841 4 H 0.004 0.996 5 C -0.500 4.500 6 H 0.020 0.980 7 C 0.011 3.989 8 N -0.952 5.952 9 Si 0.947 3.053 10 H -0.270 1.270 11 H -0.291 1.291 12 H -0.241 1.241 13 N -0.437 5.437 14 C -0.002 4.002 15 C 0.159 3.841 16 C 0.015 3.985 17 C -0.109 4.109 18 C -0.120 4.120 19 C 0.102 3.898 20 N -0.586 5.586 21 C 0.640 3.360 22 O -0.537 6.537 23 O -0.369 6.369 24 C 0.132 3.868 25 C -0.176 4.176 26 C -0.129 4.129 27 C -0.179 4.179 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.036 0.964 33 H 0.265 0.735 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.037 0.963 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.084 0.916 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.098 0.902 49 H 0.074 0.926 50 H 0.048 0.952 51 H 0.085 0.915 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.975 9.610 -13.878 24.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.152 4.152 3 C 0.050 3.950 4 H 0.022 0.978 5 C -0.538 4.538 6 H 0.038 0.962 7 C -0.186 4.186 8 N -0.593 5.593 9 Si 0.772 3.228 10 H -0.196 1.196 11 H -0.218 1.218 12 H -0.164 1.164 13 N -0.159 5.159 14 C -0.132 4.132 15 C 0.073 3.927 16 C -0.116 4.116 17 C -0.147 4.147 18 C -0.158 4.158 19 C -0.019 4.019 20 N -0.327 5.327 21 C 0.394 3.606 22 O -0.423 6.423 23 O -0.285 6.285 24 C 0.095 3.905 25 C -0.233 4.233 26 C -0.186 4.186 27 C -0.236 4.236 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.139 0.861 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.103 0.897 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.117 0.883 49 H 0.093 0.907 50 H 0.067 0.933 51 H 0.104 0.896 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -17.292 8.682 -14.293 24.056 hybrid contribution 0.823 -0.496 1.552 1.826 sum -16.469 8.186 -12.741 22.374 Atomic orbital electron populations 1.22084 0.94621 1.01981 1.02345 1.21661 0.96286 0.97970 0.99287 1.20134 0.93715 0.92592 0.88548 0.97814 1.21100 0.91374 1.40957 1.00397 0.96199 1.25834 0.95961 0.95670 1.01138 1.70070 1.10971 1.49338 1.28925 0.85840 0.79861 0.79399 0.77668 1.19563 1.21836 1.16415 1.69256 1.04902 1.10013 1.31714 1.24239 0.93693 0.95153 1.00067 1.21588 0.95356 0.96880 0.78868 1.23789 0.97142 0.91722 0.98937 1.22533 1.01506 0.91711 0.98990 1.22832 1.04321 0.96675 0.91945 1.22615 0.96653 0.83890 0.98784 1.46710 1.56159 1.25588 1.04202 1.17968 0.79289 0.82374 0.80984 1.91185 1.44230 1.31420 1.75417 1.86245 1.73522 1.52616 1.16098 1.22251 0.91377 0.86035 0.90839 1.22418 1.01220 0.96321 1.03380 1.21829 1.03834 1.03603 0.89337 1.22441 0.95432 1.02647 1.03124 0.91014 0.92287 0.92577 0.94160 0.94578 0.92614 0.90619 0.89889 0.91438 0.94477 0.87517 0.88959 0.91045 0.86131 0.90140 0.89619 0.91552 0.89730 0.92798 0.91200 0.88348 0.90668 0.93280 0.89630 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.46 8.83 71.98 0.64 -4.82 16 2 C -0.11 -5.32 5.18 30.59 0.16 -5.16 16 3 C 0.16 7.97 0.92 44.17 0.04 8.01 16 4 H 0.00 0.22 6.24 -2.39 -0.01 0.20 16 5 C -0.50 -30.89 8.67 25.60 0.22 -30.67 16 6 H 0.02 1.41 8.02 -2.91 -0.02 1.39 16 7 C 0.01 0.65 5.45 84.66 0.46 1.11 16 8 N -0.95 -62.73 13.96 21.45 0.30 -62.43 16 9 Si 0.95 46.69 24.69 68.60 1.69 48.39 16 10 H -0.27 -12.89 6.86 99.48 0.68 -12.21 16 11 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.24 -10.78 6.39 99.48 0.64 -10.15 16 13 N -0.44 -19.77 3.74 -905.98 -3.39 -23.16 16 14 C 0.00 -0.05 4.37 83.76 0.37 0.31 16 15 C 0.16 4.79 1.57 3.92 0.01 4.80 16 16 C 0.01 0.61 5.99 83.81 0.50 1.11 16 17 C -0.11 -2.05 6.34 31.59 0.20 -1.85 16 18 C -0.12 -1.74 7.09 32.08 0.23 -1.51 16 19 C 0.10 1.92 6.95 86.83 0.60 2.52 16 20 N -0.59 -17.29 3.20 -900.70 -2.88 -20.17 16 21 C 0.64 22.68 7.68 129.79 1.00 23.68 16 22 O -0.54 -23.60 9.25 19.78 0.18 -23.41 16 23 O -0.37 -11.06 9.44 -55.38 -0.52 -11.58 16 24 C 0.13 3.44 1.13 -10.79 -0.01 3.43 16 25 C -0.18 -4.73 8.37 71.98 0.60 -4.13 16 26 C -0.13 -2.20 8.85 71.98 0.64 -1.56 16 27 C -0.18 -5.32 8.37 71.98 0.60 -4.71 16 28 H 0.07 2.45 4.61 -2.39 -0.01 2.44 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 31 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.04 1.73 4.01 -2.39 -0.01 1.72 16 33 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 34 H 0.08 2.59 6.77 -2.38 -0.02 2.57 16 35 H 0.08 2.55 7.23 -2.39 -0.02 2.54 16 36 H 0.07 2.77 7.63 -2.39 -0.02 2.75 16 37 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16 39 H 0.09 1.70 7.82 -2.39 -0.02 1.68 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.08 1.46 8.06 -2.38 -0.02 1.44 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.29 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.05 1.93 5.88 -2.38 -0.01 1.91 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.05 1.95 5.88 -2.39 -0.01 1.94 16 51 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 52 H 0.06 1.64 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -81.05 382.94 2.43 -78.62 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.79 Total: 23.19 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: 6.25 Total: -9.45 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -5.96 Total: -105.76 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -0.34 Total: -35.00 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.69 Total: 48.39 kcal Total: -81.05 2.43 -78.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.151 kcal (2) G-P(sol) polarization free energy of solvation -81.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds