Wall clock time and date at job start Tue Mar 31 2020 15:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46828 * 2 1 4 4 H 1.08995 * 109.47466 * 304.50598 * 3 2 1 5 5 C 1.50705 * 109.46698 * 184.50684 * 3 2 1 6 6 H 1.08001 * 119.99390 * 239.99727 * 5 3 2 7 7 C 1.37878 * 119.99941 * 60.00124 * 5 3 2 8 8 N 1.31516 * 120.00075 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99705 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46934 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47018 * 299.99982 * 9 7 5 12 12 H 1.48503 * 109.47244 * 60.00021 * 9 7 5 13 13 N 1.46896 * 109.47132 * 64.50603 * 3 2 1 14 14 C 1.46989 * 111.00057 * 189.45667 * 13 3 2 15 15 C 1.52605 * 108.90387 * 166.41986 * 14 13 3 16 16 C 1.52147 * 111.03884 * 56.65818 * 15 14 13 17 17 H 1.09008 * 112.56011 * 97.46969 * 16 15 14 18 18 C 1.54263 * 112.28910 * 227.15091 * 16 15 14 19 19 N 1.47668 * 85.96088 * 93.47174 * 18 16 15 20 20 C 1.34768 * 134.72197 * 204.43788 * 19 18 16 21 21 O 1.21507 * 120.00168 * 180.02562 * 20 19 18 22 22 O 1.34641 * 120.00264 * 0.03169 * 20 19 18 23 23 C 1.45199 * 117.00255 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.46821 * 60.00028 * 23 22 20 25 25 C 1.52996 * 109.46976 * 179.97438 * 23 22 20 26 26 C 1.52996 * 109.47150 * 299.99739 * 23 22 20 27 27 C 1.47268 * 90.55264 * 24.46118 * 19 18 16 28 28 H 1.08998 * 112.49973 * 88.33491 * 27 19 18 29 29 C 1.46432 * 110.99940 * 66.17568 * 13 3 2 30 30 H 1.09000 * 109.46615 * 185.58376 * 1 2 3 31 31 H 1.09000 * 109.46764 * 305.58144 * 1 2 3 32 32 H 1.08996 * 109.47087 * 65.57959 * 1 2 3 33 33 H 1.08998 * 109.46579 * 240.00320 * 2 1 3 34 34 H 1.08999 * 109.46985 * 119.99989 * 2 1 3 35 35 H 0.96991 * 119.99839 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.56609 * 286.24250 * 14 13 3 37 37 H 1.08998 * 109.56434 * 46.59154 * 14 13 3 38 38 H 1.08995 * 109.16217 * 177.06341 * 15 14 13 39 39 H 1.09004 * 109.16284 * 296.26172 * 15 14 13 40 40 H 1.09001 * 113.79425 * 207.73537 * 18 16 15 41 41 H 1.08994 * 113.78930 * 339.21286 * 18 16 15 42 42 H 1.08996 * 109.47353 * 60.00180 * 24 23 22 43 43 H 1.09007 * 109.46696 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.47110 * 299.99619 * 24 23 22 45 45 H 1.09004 * 109.47145 * 60.00126 * 25 23 22 46 46 H 1.09007 * 109.47104 * 179.97438 * 25 23 22 47 47 H 1.08996 * 109.47418 * 299.99954 * 25 23 22 48 48 H 1.09007 * 109.46950 * 60.00450 * 26 23 22 49 49 H 1.08998 * 109.47184 * 179.97438 * 26 23 22 50 50 H 1.08995 * 109.47300 * 300.00265 * 26 23 22 51 51 H 1.08997 * 109.05552 * 302.66265 * 29 13 3 52 52 H 1.08995 * 109.05328 * 61.57028 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6123 1.9791 -0.8468 5 6 3.5429 1.4440 -0.1117 6 1 4.1418 1.8908 0.6681 7 6 4.1532 0.8749 -1.2093 8 7 3.4238 0.3304 -2.1586 9 14 6.0160 0.8773 -1.3479 10 1 6.4192 0.2102 -2.6120 11 1 6.5105 2.2776 -1.3483 12 1 6.5993 0.1467 -0.1941 13 7 1.6412 2.1029 1.2501 14 6 1.9147 3.5460 1.1941 15 6 1.1888 4.2320 2.3478 16 6 1.6005 3.6340 3.6849 17 1 2.3736 4.2183 4.1841 18 6 0.3869 3.3201 4.5840 19 7 0.4437 1.9616 4.0080 20 6 -0.4495 0.9677 3.8329 21 8 -0.1045 -0.0744 3.3121 22 8 -1.7242 1.1296 4.2350 23 6 -2.6314 0.0175 4.0142 24 6 -2.1181 -1.2153 4.7610 25 6 -4.0234 0.3843 4.5325 26 6 -2.7083 -0.2884 2.5171 27 6 1.8740 2.1351 3.7034 28 1 2.5161 1.8378 4.5324 29 6 2.3148 1.4981 2.4011 30 1 -0.3632 -1.0228 0.1000 31 1 -0.3633 0.5980 0.8358 32 1 -0.3633 0.4249 -0.9357 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 -0.0703 -2.9305 36 1 2.9874 3.7180 1.2840 37 1 1.5569 3.9488 0.2466 38 1 1.4307 5.2947 2.3414 39 1 0.1135 4.1098 2.2172 40 1 0.6090 3.3552 5.6506 41 1 -0.5131 3.8738 4.3168 42 1 -2.0633 -0.9974 5.8275 43 1 -2.7994 -2.0500 4.5956 44 1 -1.1263 -1.4767 4.3921 45 1 -4.3892 1.2627 4.0008 46 1 -4.7045 -0.4504 4.3663 47 1 -3.9683 0.6019 5.5991 48 1 -1.7164 -0.5499 2.1483 49 1 -3.3889 -1.1234 2.3514 50 1 -3.0739 0.5899 1.9851 51 1 2.0836 0.4333 2.4296 52 1 3.3917 1.6242 2.2898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:26 Heat of formation + Delta-G solvation = -40.038784 kcal Electronic energy + Delta-G solvation = -31071.910371 eV Core-core repulsion = 27265.894093 eV Total energy + Delta-G solvation = -3806.016279 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.84007 -39.60040 -36.78771 -36.07729 -33.81135 -33.11654 -31.65711 -30.58623 -29.01908 -27.44894 -27.34121 -27.16887 -25.55597 -23.53719 -22.95707 -21.90451 -21.19445 -19.48638 -19.15981 -18.15247 -17.27770 -16.37145 -16.27870 -15.85645 -15.37128 -15.00581 -14.68327 -14.23739 -14.06281 -13.99128 -13.44646 -13.37953 -13.16779 -12.85933 -12.56231 -12.44070 -12.31210 -12.12801 -11.94521 -11.78365 -11.69815 -11.52256 -11.30239 -11.25047 -11.17716 -11.02549 -11.00300 -10.80607 -10.58787 -10.50196 -10.21728 -10.10857 -10.07124 -9.84189 -9.52103 -9.40568 -9.08392 -8.95386 -8.33834 -8.27402 -7.00773 -5.92306 -4.06431 2.33942 3.30028 3.35664 3.37439 3.38418 3.99833 4.42705 4.46540 4.84016 4.86047 4.96712 5.02830 5.09320 5.19478 5.30581 5.40706 5.45485 5.49274 5.56735 5.61186 5.71137 5.73999 5.79066 5.83195 5.94688 5.98821 6.02203 6.06006 6.09053 6.25990 6.39210 6.42756 6.47984 6.59751 6.61706 6.66815 6.70188 6.80277 6.84976 6.88869 6.94831 7.32929 7.40771 7.51663 7.74135 7.88047 8.07398 8.14096 8.24007 8.42111 8.58057 8.84886 9.04229 9.60693 11.06116 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.004529 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.897567 B = 6181.284833 C = 7187.367928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.103 4.103 3 C 0.218 3.782 4 H 0.035 0.965 5 C -0.543 4.543 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.288 1.288 11 H -0.279 1.279 12 H -0.278 1.278 13 N -0.519 5.519 14 C 0.061 3.939 15 C -0.094 4.094 16 C -0.112 4.112 17 H 0.087 0.913 18 C 0.107 3.893 19 N -0.615 5.615 20 C 0.675 3.325 21 O -0.550 6.550 22 O -0.371 6.371 23 C 0.139 3.861 24 C -0.182 4.182 25 C -0.138 4.138 26 C -0.186 4.186 27 C 0.170 3.830 28 H 0.083 0.917 29 C 0.051 3.949 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.028 0.972 33 H 0.086 0.914 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.033 0.967 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.090 0.910 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.062 0.938 48 H 0.099 0.901 49 H 0.063 0.937 50 H 0.057 0.943 51 H 0.093 0.907 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.190 4.571 14.310 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.142 4.142 3 C 0.112 3.888 4 H 0.053 0.947 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.213 1.213 11 H -0.205 1.205 12 H -0.204 1.204 13 N -0.243 5.243 14 C -0.067 4.067 15 C -0.132 4.132 16 C -0.132 4.132 17 H 0.106 0.894 18 C -0.016 4.016 19 N -0.358 5.358 20 C 0.431 3.569 21 O -0.438 6.438 22 O -0.287 6.287 23 C 0.102 3.898 24 C -0.239 4.239 25 C -0.196 4.196 26 C -0.243 4.243 27 C 0.068 3.932 28 H 0.100 0.900 29 C -0.078 4.078 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.104 0.896 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.073 0.927 43 H 0.084 0.916 44 H 0.109 0.891 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.081 0.919 48 H 0.118 0.882 49 H 0.082 0.918 50 H 0.076 0.924 51 H 0.111 0.889 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.818 3.849 13.977 18.089 hybrid contribution 1.883 -0.044 -0.166 1.891 sum -8.935 3.805 13.812 16.884 Atomic orbital electron populations 1.21671 0.98874 0.98425 0.99862 1.21492 0.92345 0.98798 1.01545 1.19250 0.92710 0.91409 0.85459 0.94688 1.21707 0.92930 1.38060 1.05561 0.92674 1.24896 0.97616 0.95079 0.95716 1.69878 1.34806 1.38040 1.09492 0.86776 0.86482 0.78081 0.77320 1.21330 1.20461 1.20388 1.62413 1.56586 1.01111 1.04159 1.21769 0.97594 0.90641 0.96734 1.21153 1.01178 0.98022 0.92809 1.22575 0.97419 0.95726 0.97439 0.89433 1.23391 0.98859 0.82009 0.97376 1.48546 1.10132 1.14311 1.62795 1.17404 0.79710 0.82134 0.77615 1.90911 1.79243 1.26367 1.47278 1.86259 1.19587 1.44998 1.77830 1.21930 0.87401 0.84252 0.96259 1.22503 1.04484 0.96983 0.99901 1.21834 0.93534 1.02520 1.01671 1.22577 1.05715 1.01770 0.94208 1.22335 0.79402 0.93034 0.98406 0.89961 1.21711 0.97069 1.00568 0.88456 0.96007 0.92600 0.95316 0.89562 0.94804 0.92931 0.94830 0.91563 0.92156 0.91656 0.90479 0.90195 0.92739 0.91584 0.89132 0.91682 0.90509 0.91930 0.88225 0.91850 0.92364 0.88915 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 9.60 37.16 0.36 -2.58 16 2 C -0.10 -2.58 5.15 -26.73 -0.14 -2.72 16 3 C 0.22 5.39 1.71 -68.86 -0.12 5.27 16 4 H 0.04 0.97 7.90 -51.93 -0.41 0.56 16 5 C -0.54 -14.36 7.28 -34.44 -0.25 -14.61 16 6 H 0.06 1.44 5.80 -52.49 -0.30 1.14 16 7 C 0.07 1.89 5.29 -17.82 -0.09 1.79 16 8 N -0.88 -25.07 11.29 55.43 0.63 -24.44 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.52 -10.76 3.96 -229.54 -0.91 -11.67 16 14 C 0.06 1.13 5.10 -3.98 -0.02 1.10 16 15 C -0.09 -1.31 5.83 -27.37 -0.16 -1.47 16 16 C -0.11 -1.40 4.25 -90.78 -0.39 -1.79 16 17 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 18 C 0.11 1.25 8.31 -2.86 -0.02 1.22 16 19 N -0.61 -9.59 3.47 -178.75 -0.62 -10.21 16 20 C 0.68 11.80 8.13 54.05 0.44 12.24 16 21 O -0.55 -10.89 10.62 -19.28 -0.20 -11.09 16 22 O -0.37 -5.82 9.88 -40.33 -0.40 -6.22 16 23 C 0.14 1.85 1.13 -90.62 -0.10 1.75 16 24 C -0.18 -2.33 8.37 37.16 0.31 -2.02 16 25 C -0.14 -1.38 8.85 37.16 0.33 -1.06 16 26 C -0.19 -2.67 8.37 37.16 0.31 -2.35 16 27 C 0.17 2.61 4.41 -68.70 -0.30 2.30 16 28 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 29 C 0.05 1.00 4.25 -4.82 -0.02 0.98 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 1.25 6.33 -51.93 -0.33 0.92 16 32 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 2.39 5.96 -51.93 -0.31 2.08 16 34 H 0.03 0.87 6.30 -51.93 -0.33 0.54 16 35 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 36 H 0.03 0.64 7.44 -51.93 -0.39 0.26 16 37 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.98 7.55 -51.93 -0.39 0.59 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.90 7.81 -51.93 -0.41 0.49 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.09 1.42 5.88 -51.93 -0.31 1.12 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.08 0.62 8.14 -51.92 -0.42 0.20 16 47 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.10 1.77 4.94 -51.92 -0.26 1.51 16 49 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 50 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.09 2.08 5.13 -51.93 -0.27 1.82 16 52 H 0.05 1.05 6.12 -51.93 -0.32 0.74 16 LS Contribution 385.31 15.07 5.81 5.81 Total: -1.00 -29.66 385.31 -9.64 -39.30 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: -9.05 Total: 4.39 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: 0.13 Total: -1.94 kcal Atomic # 7 Polarization: -45.42 SS G_CDS: -0.90 Total: -46.32 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.60 Total: -17.31 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.66 -9.64 -39.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.739 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds