Wall clock time and date at job start Tue Mar 31 2020 15:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.53000 * 109.46828 * 2 1 4 4 H 1.08995 * 109.47466 * 304.50598 * 3 2 1 5 5 C 1.50705 * 109.46698 * 184.50684 * 3 2 1 6 6 H 1.08001 * 119.99390 * 239.99727 * 5 3 2 7 7 C 1.37878 * 119.99941 * 60.00124 * 5 3 2 8 8 N 1.31516 * 120.00075 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99705 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46934 * 180.02562 * 9 7 5 11 11 H 1.48503 * 109.47018 * 299.99982 * 9 7 5 12 12 H 1.48503 * 109.47244 * 60.00021 * 9 7 5 13 13 N 1.46896 * 109.47132 * 64.50603 * 3 2 1 14 14 C 1.46989 * 111.00057 * 189.45667 * 13 3 2 15 15 C 1.52605 * 108.90387 * 166.41986 * 14 13 3 16 16 C 1.52147 * 111.03884 * 56.65818 * 15 14 13 17 17 H 1.09008 * 112.56011 * 97.46969 * 16 15 14 18 18 C 1.54263 * 112.28910 * 227.15091 * 16 15 14 19 19 N 1.47668 * 85.96088 * 93.47174 * 18 16 15 20 20 C 1.34768 * 134.72197 * 204.43788 * 19 18 16 21 21 O 1.21507 * 120.00168 * 180.02562 * 20 19 18 22 22 O 1.34641 * 120.00264 * 0.03169 * 20 19 18 23 23 C 1.45199 * 117.00255 * 179.97438 * 22 20 19 24 24 C 1.53003 * 109.46821 * 60.00028 * 23 22 20 25 25 C 1.52996 * 109.46976 * 179.97438 * 23 22 20 26 26 C 1.52996 * 109.47150 * 299.99739 * 23 22 20 27 27 C 1.47268 * 90.55264 * 24.46118 * 19 18 16 28 28 H 1.08998 * 112.49973 * 88.33491 * 27 19 18 29 29 C 1.46432 * 110.99940 * 66.17568 * 13 3 2 30 30 H 1.09000 * 109.46615 * 185.58376 * 1 2 3 31 31 H 1.09000 * 109.46764 * 305.58144 * 1 2 3 32 32 H 1.08996 * 109.47087 * 65.57959 * 1 2 3 33 33 H 1.08998 * 109.46579 * 240.00320 * 2 1 3 34 34 H 1.08999 * 109.46985 * 119.99989 * 2 1 3 35 35 H 0.96991 * 119.99839 * 180.02562 * 8 7 5 36 36 H 1.09004 * 109.56609 * 286.24250 * 14 13 3 37 37 H 1.08998 * 109.56434 * 46.59154 * 14 13 3 38 38 H 1.08995 * 109.16217 * 177.06341 * 15 14 13 39 39 H 1.09004 * 109.16284 * 296.26172 * 15 14 13 40 40 H 1.09001 * 113.79425 * 207.73537 * 18 16 15 41 41 H 1.08994 * 113.78930 * 339.21286 * 18 16 15 42 42 H 1.08996 * 109.47353 * 60.00180 * 24 23 22 43 43 H 1.09007 * 109.46696 * 179.97438 * 24 23 22 44 44 H 1.09001 * 109.47110 * 299.99619 * 24 23 22 45 45 H 1.09004 * 109.47145 * 60.00126 * 25 23 22 46 46 H 1.09007 * 109.47104 * 179.97438 * 25 23 22 47 47 H 1.08996 * 109.47418 * 299.99954 * 25 23 22 48 48 H 1.09007 * 109.46950 * 60.00450 * 26 23 22 49 49 H 1.08998 * 109.47184 * 179.97438 * 26 23 22 50 50 H 1.08995 * 109.47300 * 300.00265 * 26 23 22 51 51 H 1.08997 * 109.05552 * 302.66265 * 29 13 3 52 52 H 1.08995 * 109.05328 * 61.57028 * 29 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6123 1.9791 -0.8468 5 6 3.5429 1.4440 -0.1117 6 1 4.1418 1.8908 0.6681 7 6 4.1532 0.8749 -1.2093 8 7 3.4238 0.3304 -2.1586 9 14 6.0160 0.8773 -1.3479 10 1 6.4192 0.2102 -2.6120 11 1 6.5105 2.2776 -1.3483 12 1 6.5993 0.1467 -0.1941 13 7 1.6412 2.1029 1.2501 14 6 1.9147 3.5460 1.1941 15 6 1.1888 4.2320 2.3478 16 6 1.6005 3.6340 3.6849 17 1 2.3736 4.2183 4.1841 18 6 0.3869 3.3201 4.5840 19 7 0.4437 1.9616 4.0080 20 6 -0.4495 0.9677 3.8329 21 8 -0.1045 -0.0744 3.3121 22 8 -1.7242 1.1296 4.2350 23 6 -2.6314 0.0175 4.0142 24 6 -2.1181 -1.2153 4.7610 25 6 -4.0234 0.3843 4.5325 26 6 -2.7083 -0.2884 2.5171 27 6 1.8740 2.1351 3.7034 28 1 2.5161 1.8378 4.5324 29 6 2.3148 1.4981 2.4011 30 1 -0.3632 -1.0228 0.1000 31 1 -0.3633 0.5980 0.8358 32 1 -0.3633 0.4249 -0.9357 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8532 -0.0703 -2.9305 36 1 2.9874 3.7180 1.2840 37 1 1.5569 3.9488 0.2466 38 1 1.4307 5.2947 2.3414 39 1 0.1135 4.1098 2.2172 40 1 0.6090 3.3552 5.6506 41 1 -0.5131 3.8738 4.3168 42 1 -2.0633 -0.9974 5.8275 43 1 -2.7994 -2.0500 4.5956 44 1 -1.1263 -1.4767 4.3921 45 1 -4.3892 1.2627 4.0008 46 1 -4.7045 -0.4504 4.3663 47 1 -3.9683 0.6019 5.5991 48 1 -1.7164 -0.5499 2.1483 49 1 -3.3889 -1.1234 2.3514 50 1 -3.0739 0.5899 1.9851 51 1 2.0836 0.4333 2.4296 52 1 3.3917 1.6242 2.2898 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:25 Heat of formation + Delta-G solvation = -57.979419 kcal Electronic energy + Delta-G solvation = -31072.688336 eV Core-core repulsion = 27265.894093 eV Total energy + Delta-G solvation = -3806.794243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.05513 -40.80643 -38.43525 -37.35950 -35.09348 -34.72637 -33.49187 -32.16689 -30.37077 -29.05316 -28.28600 -28.23038 -27.24183 -24.96494 -24.69723 -23.21597 -22.54311 -21.08388 -20.61592 -19.45317 -18.74830 -17.75874 -17.61943 -17.38244 -16.89087 -16.34105 -16.17487 -15.71073 -15.36621 -15.24579 -14.98113 -14.77380 -14.62382 -14.34898 -14.03348 -13.72846 -13.55798 -13.27344 -13.23977 -13.05672 -12.99284 -12.94581 -12.80274 -12.75280 -12.70417 -12.42490 -12.41205 -12.34052 -12.12879 -11.95784 -11.79449 -11.65358 -11.58282 -11.33208 -11.23423 -11.07714 -10.88839 -10.57032 -10.40172 -9.50686 -8.81049 -7.99298 -6.24081 1.20211 1.38064 1.39207 1.46236 2.11574 2.40772 2.94517 3.17114 3.30528 3.58001 3.85348 3.86987 3.90854 4.02817 4.08330 4.29950 4.36511 4.54580 4.54916 4.60684 4.62151 4.65987 4.66750 4.72745 4.75309 4.81189 4.82417 4.87657 4.91328 4.93247 4.94826 5.06238 5.06597 5.11965 5.15108 5.21003 5.31334 5.34253 5.35317 5.40066 5.50352 5.52652 5.54290 5.67255 5.70357 5.81373 6.06638 6.21927 6.43417 6.77492 6.95251 6.98562 7.46922 7.59390 8.94232 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015666 B = 0.004529 C = 0.003895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.897567 B = 6181.284833 C = 7187.367928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.092 4.092 3 C 0.227 3.773 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.287 1.287 11 H -0.270 1.270 12 H -0.275 1.275 13 N -0.519 5.519 14 C 0.059 3.941 15 C -0.084 4.084 16 C -0.102 4.102 17 H 0.128 0.872 18 C 0.118 3.882 19 N -0.624 5.624 20 C 0.665 3.335 21 O -0.584 6.584 22 O -0.372 6.372 23 C 0.129 3.871 24 C -0.175 4.175 25 C -0.131 4.131 26 C -0.182 4.182 27 C 0.162 3.838 28 H 0.107 0.893 29 C 0.061 3.939 30 H 0.029 0.971 31 H 0.055 0.945 32 H 0.025 0.975 33 H 0.056 0.944 34 H 0.018 0.982 35 H 0.260 0.740 36 H 0.024 0.976 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.056 0.944 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.064 0.936 43 H 0.086 0.914 44 H 0.056 0.944 45 H 0.065 0.935 46 H 0.099 0.901 47 H 0.073 0.927 48 H 0.062 0.938 49 H 0.084 0.916 50 H 0.052 0.948 51 H 0.056 0.944 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.801 6.434 17.076 21.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.131 4.131 3 C 0.119 3.881 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.774 3.226 10 H -0.212 1.212 11 H -0.195 1.195 12 H -0.200 1.200 13 N -0.242 5.242 14 C -0.069 4.069 15 C -0.122 4.122 16 C -0.121 4.121 17 H 0.146 0.854 18 C -0.004 4.004 19 N -0.367 5.367 20 C 0.421 3.579 21 O -0.474 6.474 22 O -0.287 6.287 23 C 0.092 3.908 24 C -0.233 4.233 25 C -0.188 4.188 26 C -0.239 4.239 27 C 0.060 3.940 28 H 0.125 0.875 29 C -0.068 4.068 30 H 0.048 0.952 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.075 0.925 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.074 0.926 40 H 0.130 0.870 41 H 0.106 0.894 42 H 0.083 0.917 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.084 0.916 46 H 0.117 0.883 47 H 0.092 0.908 48 H 0.081 0.919 49 H 0.103 0.897 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -11.440 5.754 16.775 21.104 hybrid contribution 2.046 -0.653 -1.055 2.393 sum -9.394 5.101 15.720 19.010 Atomic orbital electron populations 1.21445 0.96907 0.98869 0.99537 1.21285 0.93922 0.98715 0.99130 1.18943 0.91803 0.90940 0.86389 0.98348 1.21959 0.93886 1.37571 1.05419 0.92639 1.25660 1.01958 0.94899 0.95520 1.70023 1.36459 1.38868 1.09956 0.85771 0.81268 0.78367 0.77179 1.21211 1.19507 1.20025 1.62334 1.56559 1.02489 1.02849 1.21853 0.97651 0.89128 0.98315 1.21092 0.99862 0.99508 0.91723 1.22572 0.98987 0.93568 0.96985 0.85442 1.23615 0.98634 0.79219 0.98908 1.48788 1.09831 1.15409 1.62692 1.17708 0.80397 0.82218 0.77546 1.90906 1.79896 1.27945 1.48682 1.86262 1.18977 1.45938 1.77541 1.22266 0.88714 0.84179 0.95596 1.22425 1.03053 0.97590 1.00186 1.21837 0.91306 1.03508 1.02121 1.22510 1.03909 1.02300 0.95203 1.22470 0.79996 0.95134 0.96381 0.87523 1.21546 0.95911 0.99062 0.90331 0.95224 0.92617 0.95586 0.92538 0.96334 0.93095 0.95762 0.93286 0.88721 0.92561 0.86999 0.89357 0.91721 0.89503 0.92523 0.91554 0.88252 0.90843 0.91942 0.89707 0.92897 0.92537 0.94976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.20 9.60 71.99 0.69 -4.51 16 2 C -0.09 -4.88 5.15 30.60 0.16 -4.73 16 3 C 0.23 11.83 1.71 44.17 0.08 11.90 16 4 H 0.00 -0.08 7.90 -2.39 -0.02 -0.10 16 5 C -0.55 -30.14 7.28 25.60 0.19 -29.96 16 6 H 0.06 2.98 5.80 -2.91 -0.02 2.97 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.95 44.15 29.54 68.60 2.03 46.17 16 10 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.52 -22.25 3.96 -880.14 -3.49 -25.74 16 14 C 0.06 2.16 5.10 86.16 0.44 2.60 16 15 C -0.08 -2.14 5.83 30.18 0.18 -1.97 16 16 C -0.10 -2.17 4.25 -10.83 -0.05 -2.21 16 17 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 18 C 0.12 2.25 8.31 86.50 0.72 2.97 16 19 N -0.62 -18.46 3.47 -949.85 -3.29 -21.76 16 20 C 0.66 23.12 8.13 129.79 1.06 24.18 16 21 O -0.58 -24.02 10.62 19.82 0.21 -23.81 16 22 O -0.37 -11.26 9.88 -55.51 -0.55 -11.81 16 23 C 0.13 3.29 1.13 -10.80 -0.01 3.28 16 24 C -0.18 -4.35 8.37 71.98 0.60 -3.74 16 25 C -0.13 -2.25 8.85 71.98 0.64 -1.62 16 26 C -0.18 -5.22 8.37 71.98 0.60 -4.61 16 27 C 0.16 4.71 4.41 44.07 0.19 4.90 16 28 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 29 C 0.06 2.44 4.25 85.91 0.37 2.80 16 30 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.05 2.62 6.33 -2.39 -0.02 2.61 16 32 H 0.02 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 3.33 5.96 -2.39 -0.01 3.32 16 34 H 0.02 1.00 6.30 -2.39 -0.02 0.99 16 35 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 36 H 0.02 0.93 7.44 -2.39 -0.02 0.91 16 37 H 0.05 1.93 7.87 -2.39 -0.02 1.91 16 38 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.56 7.55 -2.39 -0.02 1.54 16 40 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.09 1.60 7.81 -2.39 -0.02 1.58 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.09 1.73 8.14 -2.38 -0.02 1.71 16 44 H 0.06 1.82 5.88 -2.39 -0.01 1.81 16 45 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 46 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 47 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.06 2.30 4.94 -2.38 -0.01 2.29 16 49 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 50 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 51 H 0.06 2.68 5.13 -2.39 -0.01 2.67 16 52 H 0.03 1.39 6.12 -2.39 -0.01 1.37 16 Total: -1.00 -69.96 385.31 2.33 -67.62 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.89 Total: 22.20 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: 6.29 Total: 0.82 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -6.54 Total: -101.19 kcal Atomic # 8 Polarization: -35.28 SS G_CDS: -0.34 Total: -35.62 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -69.96 2.33 -67.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.646 kcal (2) G-P(sol) polarization free energy of solvation -69.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds