Wall clock time and date at job start Tue Mar 31 2020 15:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 H 1.08996 * 109.47150 * 304.99898 * 3 2 1 5 5 C 1.50703 * 109.47239 * 185.00018 * 3 2 1 6 6 H 1.07999 * 120.00002 * 240.00329 * 5 3 2 7 7 C 1.37872 * 120.00040 * 59.99671 * 5 3 2 8 8 N 1.31514 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47059 * 90.00183 * 9 7 5 11 11 H 1.48502 * 109.47084 * 210.00408 * 9 7 5 12 12 H 1.48495 * 109.47090 * 330.00089 * 9 7 5 13 13 N 1.46903 * 109.47057 * 65.00187 * 3 2 1 14 14 C 1.49565 * 111.00179 * 69.87442 * 13 3 2 15 15 C 1.56251 * 106.51405 * 129.74842 * 14 13 3 16 16 C 1.51457 * 100.76356 * 23.08681 * 15 14 13 17 17 H 1.09000 * 109.91840 * 71.69924 * 16 15 14 18 18 C 1.44105 * 111.02635 * 187.34260 * 13 3 2 19 19 H 1.08999 * 109.56238 * 319.23337 * 18 13 3 20 20 C 1.51541 * 125.10163 * 93.14307 * 18 13 3 21 21 C 1.56253 * 100.70190 * 154.30486 * 20 18 13 22 22 N 1.43471 * 125.44321 * 205.12642 * 16 15 14 23 23 C 1.34780 * 126.99931 * 326.85239 * 22 16 15 24 24 O 1.21512 * 119.99543 * 359.97438 * 23 22 16 25 25 O 1.34633 * 119.99942 * 179.97438 * 23 22 16 26 26 C 1.45207 * 116.99588 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.46946 * 60.00360 * 26 25 23 28 28 C 1.53002 * 109.46815 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47209 * 299.99965 * 26 25 23 30 30 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47169 * 300.00120 * 1 2 3 32 32 H 1.08997 * 109.46504 * 59.99928 * 1 2 3 33 33 H 1.09004 * 109.47434 * 239.99695 * 2 1 3 34 34 H 1.09006 * 109.47048 * 120.00106 * 2 1 3 35 35 H 0.97002 * 120.00137 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.05896 * 10.46935 * 14 13 3 37 37 H 1.09000 * 110.05442 * 249.02901 * 14 13 3 38 38 H 1.09000 * 111.16195 * 140.95699 * 15 14 13 39 39 H 1.08994 * 111.15925 * 265.21330 * 15 14 13 40 40 H 1.09009 * 111.16848 * 272.16202 * 20 18 13 41 41 H 1.08989 * 111.16979 * 36.44121 * 20 18 13 42 42 H 1.08998 * 110.05246 * 96.20577 * 21 20 18 43 43 H 1.09005 * 110.04892 * 217.62750 * 21 20 18 44 44 H 1.08996 * 109.47234 * 60.00189 * 27 26 25 45 45 H 1.09001 * 109.46568 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.46932 * 299.99332 * 27 26 25 47 47 H 1.09003 * 109.47025 * 60.00062 * 28 26 25 48 48 H 1.09001 * 109.46885 * 179.97438 * 28 26 25 49 49 H 1.08996 * 109.47445 * 299.99860 * 28 26 25 50 50 H 1.09004 * 109.46722 * 60.00079 * 29 26 25 51 51 H 1.08991 * 109.47127 * 179.97438 * 29 26 25 52 52 H 1.09003 * 109.47429 * 300.00427 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0051 0.8799 -1.3811 10 1 6.5539 -0.3522 -0.7597 11 1 6.3836 0.9213 -2.8164 12 1 6.5577 2.0718 -0.6889 13 7 1.6515 2.0992 1.2553 14 6 2.4151 1.5383 2.4125 15 6 3.0049 2.7591 3.1891 16 6 2.0545 3.8559 2.7557 17 1 1.0816 3.7113 3.2254 18 6 1.9643 3.5055 1.2214 19 1 2.9355 3.6521 0.7489 20 6 1.0086 4.6007 0.7927 21 6 1.5951 5.8199 1.5744 22 7 2.3601 5.2574 2.7249 23 6 3.1729 5.9290 3.5644 24 8 3.7365 5.3398 4.4654 25 8 3.3604 7.2526 3.4047 26 6 4.2487 7.9108 4.3461 27 6 5.6417 7.2845 4.2561 28 6 4.3359 9.4006 4.0087 29 6 3.7038 7.7410 5.7657 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8293 -0.0612 -2.9498 36 1 3.2215 0.8987 2.0535 37 1 1.7478 0.9699 3.0604 38 1 2.9573 2.6004 4.2664 39 1 4.0247 2.9733 2.8696 40 1 1.0549 4.7643 -0.2840 41 1 -0.0101 4.3814 1.1122 42 1 2.2597 6.3934 0.9283 43 1 0.7869 6.4552 1.9368 44 1 6.0298 7.4056 3.2448 45 1 6.3083 7.7784 4.9631 46 1 5.5791 6.2233 4.4968 47 1 3.3434 9.8465 4.0730 48 1 5.0024 9.8948 4.7156 49 1 4.7239 9.5220 2.9973 50 1 3.6413 6.6797 6.0063 51 1 4.3708 8.2347 6.4723 52 1 2.7113 8.1872 5.8298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:27 Heat of formation + Delta-G solvation = -55.782766 kcal Electronic energy + Delta-G solvation = -30119.311177 eV Core-core repulsion = 26312.612188 eV Total energy + Delta-G solvation = -3806.698989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.91407 -39.75385 -37.03591 -35.90285 -34.12690 -33.34896 -31.61591 -31.21269 -29.09158 -27.52824 -27.45037 -26.69072 -26.11100 -23.69970 -22.87146 -21.76673 -21.00370 -19.94582 -19.35916 -18.70978 -17.13059 -16.80687 -16.32475 -16.24000 -15.66966 -14.90317 -14.72925 -14.39468 -14.23193 -14.03111 -13.71691 -13.53708 -13.03077 -12.73735 -12.64809 -12.58698 -12.46194 -12.24519 -12.05637 -11.97929 -11.93604 -11.77959 -11.52655 -11.32503 -11.28364 -11.23560 -11.05300 -10.67846 -10.65217 -10.56815 -10.36732 -10.16945 -10.11153 -9.97414 -9.84120 -9.65759 -9.46500 -9.08805 -8.45168 -8.39361 -7.27200 -6.04170 -4.16298 2.21360 3.00729 3.24220 3.31875 3.35347 3.81487 4.36262 4.49641 4.62959 4.66431 4.80862 5.00298 5.04429 5.21172 5.32986 5.35319 5.38471 5.42072 5.50853 5.54823 5.56055 5.64980 5.67749 5.77076 5.80671 5.86005 5.95689 6.05132 6.19757 6.22216 6.26263 6.32813 6.33651 6.40163 6.47272 6.47561 6.61065 6.67318 6.74725 6.82960 6.87383 7.04450 7.16222 7.30706 7.57711 7.68356 7.71749 7.90528 8.08464 8.24252 8.38540 8.52247 8.93138 9.50845 10.95786 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.003867 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.997080 B = 7238.840113 C = 8133.499826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.109 4.109 3 C 0.209 3.791 4 H 0.039 0.961 5 C -0.545 4.545 6 H 0.058 0.942 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.884 3.116 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.507 5.507 14 C 0.046 3.954 15 C -0.119 4.119 16 C 0.126 3.874 17 H 0.078 0.922 18 C 0.060 3.940 19 H 0.068 0.932 20 C -0.110 4.110 21 C 0.114 3.886 22 N -0.588 5.588 23 C 0.666 3.334 24 O -0.566 6.566 25 O -0.364 6.364 26 C 0.136 3.864 27 C -0.184 4.184 28 C -0.139 4.139 29 C -0.182 4.182 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.038 0.962 33 H 0.092 0.908 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.067 0.933 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 13.627 10.029 17.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.147 4.147 3 C 0.103 3.897 4 H 0.057 0.943 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.712 3.288 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.231 5.231 14 C -0.081 4.081 15 C -0.157 4.157 16 C 0.022 3.978 17 H 0.096 0.904 18 C -0.051 4.051 19 H 0.086 0.914 20 C -0.149 4.149 21 C -0.008 4.008 22 N -0.328 5.328 23 C 0.422 3.578 24 O -0.456 6.456 25 O -0.279 6.279 26 C 0.099 3.901 27 C -0.241 4.241 28 C -0.197 4.197 29 C -0.239 4.239 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.086 0.914 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.675 13.387 10.264 17.079 hybrid contribution 2.068 0.168 -0.301 2.097 sum -0.606 13.555 9.963 16.834 Atomic orbital electron populations 1.21705 0.98847 0.98450 1.00523 1.21548 0.92268 0.98966 1.01920 1.19439 0.93127 0.91415 0.85750 0.94346 1.21719 0.92665 1.38365 1.05598 0.92401 1.24878 0.97708 0.94958 0.95627 1.69872 1.34783 1.38043 1.09386 0.86718 0.86309 0.78486 0.77274 1.20585 1.21165 1.20104 1.63530 1.53386 1.00298 1.05870 1.23547 0.97166 0.95816 0.91614 1.22276 0.98817 0.94405 1.00241 1.21796 0.98337 0.78565 0.99082 0.90424 1.22502 0.98613 0.90778 0.93183 0.91450 1.22135 0.99528 0.93087 1.00131 1.22867 0.94909 0.96662 0.86406 1.46443 1.46478 1.09067 1.30781 1.17546 0.78766 0.80472 0.81059 1.90882 1.51536 1.69073 1.34097 1.86300 1.64248 1.21163 1.56174 1.22010 0.88543 0.91809 0.87746 1.22516 0.94920 1.04278 1.02390 1.21844 1.02937 0.92058 1.02820 1.22508 1.01090 1.05300 0.95042 0.95617 0.93321 0.94311 0.88993 0.94970 0.92847 0.90016 0.91893 0.91228 0.91311 0.89924 0.90103 0.90813 0.91140 0.92190 0.91380 0.89245 0.91590 0.90331 0.91501 0.89294 0.91380 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.80 37.16 0.36 -2.34 16 2 C -0.11 -2.47 5.23 -26.73 -0.14 -2.61 16 3 C 0.21 4.88 1.70 -68.86 -0.12 4.76 16 4 H 0.04 1.00 8.10 -51.93 -0.42 0.58 16 5 C -0.54 -13.93 6.20 -34.44 -0.21 -14.14 16 6 H 0.06 1.51 6.28 -52.49 -0.33 1.18 16 7 C 0.07 1.88 5.29 -17.82 -0.09 1.78 16 8 N -0.88 -24.05 11.29 55.43 0.63 -23.43 16 9 Si 0.88 20.83 29.54 -169.99 -5.02 15.80 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.51 -10.11 4.64 -215.65 -1.00 -11.11 16 14 C 0.05 0.88 5.31 -0.59 0.00 0.88 16 15 C -0.12 -2.13 5.99 -25.77 -0.15 -2.28 16 16 C 0.13 2.15 3.12 -67.78 -0.21 1.94 16 17 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 18 C 0.06 1.11 2.41 -67.41 -0.16 0.95 16 19 H 0.07 1.46 6.61 -51.93 -0.34 1.12 16 20 C -0.11 -1.62 6.86 -25.72 -0.18 -1.80 16 21 C 0.11 1.53 7.10 -0.81 -0.01 1.53 16 22 N -0.59 -9.49 3.22 -167.79 -0.54 -10.03 16 23 C 0.67 11.13 7.96 54.06 0.43 11.56 16 24 O -0.57 -10.36 11.55 -19.28 -0.22 -10.58 16 25 O -0.36 -5.32 9.57 -40.30 -0.39 -5.71 16 26 C 0.14 1.61 1.13 -90.62 -0.10 1.51 16 27 C -0.18 -2.23 8.37 37.16 0.31 -1.92 16 28 C -0.14 -1.22 8.85 37.16 0.33 -0.89 16 29 C -0.18 -2.05 8.37 37.16 0.31 -1.73 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.91 7.75 -51.93 -0.40 0.51 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 2.36 5.95 -51.93 -0.31 2.05 16 34 H 0.03 0.72 7.21 -51.93 -0.37 0.35 16 35 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 36 H 0.08 1.74 5.76 -51.93 -0.30 1.44 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 40 H 0.08 1.19 8.14 -51.92 -0.42 0.76 16 41 H 0.08 1.11 8.14 -51.94 -0.42 0.68 16 42 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.34 5.88 -51.93 -0.31 1.03 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 1.23 5.88 -51.93 -0.31 0.93 16 51 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -27.94 390.96 -9.70 -37.64 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -9.41 Total: 4.34 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: 0.37 Total: -2.82 kcal Atomic # 7 Polarization: -43.65 SS G_CDS: -0.91 Total: -44.56 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -0.61 Total: -16.29 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -27.94 -9.70 -37.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.146 kcal (2) G-P(sol) polarization free energy of solvation -27.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds