Wall clock time and date at job start Tue Mar 31 2020 15:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47266 * 2 1 4 4 H 1.08996 * 109.47150 * 304.99898 * 3 2 1 5 5 C 1.50703 * 109.47239 * 185.00018 * 3 2 1 6 6 H 1.07999 * 120.00002 * 240.00329 * 5 3 2 7 7 C 1.37872 * 120.00040 * 59.99671 * 5 3 2 8 8 N 1.31514 * 120.00085 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00069 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47059 * 90.00183 * 9 7 5 11 11 H 1.48502 * 109.47084 * 210.00408 * 9 7 5 12 12 H 1.48495 * 109.47090 * 330.00089 * 9 7 5 13 13 N 1.46903 * 109.47057 * 65.00187 * 3 2 1 14 14 C 1.49565 * 111.00179 * 69.87442 * 13 3 2 15 15 C 1.56251 * 106.51405 * 129.74842 * 14 13 3 16 16 C 1.51457 * 100.76356 * 23.08681 * 15 14 13 17 17 H 1.09000 * 109.91840 * 71.69924 * 16 15 14 18 18 C 1.44105 * 111.02635 * 187.34260 * 13 3 2 19 19 H 1.08999 * 109.56238 * 319.23337 * 18 13 3 20 20 C 1.51541 * 125.10163 * 93.14307 * 18 13 3 21 21 C 1.56253 * 100.70190 * 154.30486 * 20 18 13 22 22 N 1.43471 * 125.44321 * 205.12642 * 16 15 14 23 23 C 1.34780 * 126.99931 * 326.85239 * 22 16 15 24 24 O 1.21512 * 119.99543 * 359.97438 * 23 22 16 25 25 O 1.34633 * 119.99942 * 179.97438 * 23 22 16 26 26 C 1.45207 * 116.99588 * 179.97438 * 25 23 22 27 27 C 1.52998 * 109.46946 * 60.00360 * 26 25 23 28 28 C 1.53002 * 109.46815 * 180.02562 * 26 25 23 29 29 C 1.53001 * 109.47209 * 299.99965 * 26 25 23 30 30 H 1.08997 * 109.47348 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47169 * 300.00120 * 1 2 3 32 32 H 1.08997 * 109.46504 * 59.99928 * 1 2 3 33 33 H 1.09004 * 109.47434 * 239.99695 * 2 1 3 34 34 H 1.09006 * 109.47048 * 120.00106 * 2 1 3 35 35 H 0.97002 * 120.00137 * 180.02562 * 8 7 5 36 36 H 1.09002 * 110.05896 * 10.46935 * 14 13 3 37 37 H 1.09000 * 110.05442 * 249.02901 * 14 13 3 38 38 H 1.09000 * 111.16195 * 140.95699 * 15 14 13 39 39 H 1.08994 * 111.15925 * 265.21330 * 15 14 13 40 40 H 1.09009 * 111.16848 * 272.16202 * 20 18 13 41 41 H 1.08989 * 111.16979 * 36.44121 * 20 18 13 42 42 H 1.08998 * 110.05246 * 96.20577 * 21 20 18 43 43 H 1.09005 * 110.04892 * 217.62750 * 21 20 18 44 44 H 1.08996 * 109.47234 * 60.00189 * 27 26 25 45 45 H 1.09001 * 109.46568 * 180.02562 * 27 26 25 46 46 H 1.08999 * 109.46932 * 299.99332 * 27 26 25 47 47 H 1.09003 * 109.47025 * 60.00062 * 28 26 25 48 48 H 1.09001 * 109.46885 * 179.97438 * 28 26 25 49 49 H 1.08996 * 109.47445 * 299.99860 * 28 26 25 50 50 H 1.09004 * 109.46722 * 60.00079 * 29 26 25 51 51 H 1.08991 * 109.47127 * 179.97438 * 29 26 25 52 52 H 1.09003 * 109.47429 * 300.00427 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5420 1.4443 -0.1238 6 1 4.1473 1.8888 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4062 0.3373 -2.1732 9 14 6.0051 0.8799 -1.3811 10 1 6.5539 -0.3522 -0.7597 11 1 6.3836 0.9213 -2.8164 12 1 6.5577 2.0718 -0.6889 13 7 1.6515 2.0992 1.2553 14 6 2.4151 1.5383 2.4125 15 6 3.0049 2.7591 3.1891 16 6 2.0545 3.8559 2.7557 17 1 1.0816 3.7113 3.2254 18 6 1.9643 3.5055 1.2214 19 1 2.9355 3.6521 0.7489 20 6 1.0086 4.6007 0.7927 21 6 1.5951 5.8199 1.5744 22 7 2.3601 5.2574 2.7249 23 6 3.1729 5.9290 3.5644 24 8 3.7365 5.3398 4.4654 25 8 3.3604 7.2526 3.4047 26 6 4.2487 7.9108 4.3461 27 6 5.6417 7.2845 4.2561 28 6 4.3359 9.4006 4.0087 29 6 3.7038 7.7410 5.7657 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.8293 -0.0612 -2.9498 36 1 3.2215 0.8987 2.0535 37 1 1.7478 0.9699 3.0604 38 1 2.9573 2.6004 4.2664 39 1 4.0247 2.9733 2.8696 40 1 1.0549 4.7643 -0.2840 41 1 -0.0101 4.3814 1.1122 42 1 2.2597 6.3934 0.9283 43 1 0.7869 6.4552 1.9368 44 1 6.0298 7.4056 3.2448 45 1 6.3083 7.7784 4.9631 46 1 5.5791 6.2233 4.4968 47 1 3.3434 9.8465 4.0730 48 1 5.0024 9.8948 4.7156 49 1 4.7239 9.5220 2.9973 50 1 3.6413 6.6797 6.0063 51 1 4.3708 8.2347 6.4723 52 1 2.7113 8.1872 5.8298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:26 Heat of formation + Delta-G solvation = -71.485388 kcal Electronic energy + Delta-G solvation = -30119.992094 eV Core-core repulsion = 26312.612188 eV Total energy + Delta-G solvation = -3807.379906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.20094 -41.06419 -38.38913 -37.29524 -35.43776 -34.78272 -33.46455 -32.58517 -30.64943 -28.37526 -28.29992 -28.15153 -27.89782 -25.09409 -24.54537 -23.14310 -22.33266 -21.37466 -20.86389 -20.06936 -18.61929 -18.24204 -17.92389 -17.42180 -17.02103 -16.54670 -16.00537 -15.76954 -15.54546 -15.34556 -15.13392 -14.82127 -14.57100 -14.16970 -14.00699 -13.97624 -13.63603 -13.33461 -13.23302 -13.14900 -13.07936 -12.93519 -12.90358 -12.87639 -12.85550 -12.50401 -12.44590 -12.27516 -12.18073 -12.05760 -11.97830 -11.68931 -11.54812 -11.47611 -11.38840 -11.17107 -11.06245 -10.88938 -10.42880 -9.73874 -9.01865 -8.06249 -6.24892 1.04884 1.32356 1.35911 1.42890 1.74204 2.37337 2.63045 3.13863 3.19346 3.53110 3.74624 3.75806 3.79896 3.94796 3.99929 4.08211 4.22772 4.34239 4.47315 4.49349 4.54520 4.60704 4.63427 4.67348 4.75480 4.77970 4.80273 4.83357 4.87289 4.87785 4.96270 5.03000 5.06715 5.09772 5.17508 5.18688 5.24800 5.27867 5.32750 5.33997 5.39541 5.46995 5.49709 5.52187 5.65824 5.81420 6.02841 6.15250 6.38486 6.48800 6.53656 6.95348 7.27059 7.44229 8.90137 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014890 B = 0.003867 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1879.997080 B = 7238.840113 C = 8133.499826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.219 3.781 4 H 0.010 0.990 5 C -0.547 4.547 6 H 0.045 0.955 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.935 3.065 10 H -0.276 1.276 11 H -0.281 1.281 12 H -0.282 1.282 13 N -0.498 5.498 14 C 0.049 3.951 15 C -0.110 4.110 16 C 0.136 3.864 17 H 0.093 0.907 18 C 0.054 3.946 19 H 0.026 0.974 20 C -0.102 4.102 21 C 0.118 3.882 22 N -0.595 5.595 23 C 0.662 3.338 24 O -0.588 6.588 25 O -0.365 6.365 26 C 0.123 3.877 27 C -0.181 4.181 28 C -0.133 4.133 29 C -0.177 4.177 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.029 0.971 35 H 0.262 0.738 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.092 0.908 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 15.562 11.257 19.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.143 4.143 3 C 0.112 3.888 4 H 0.028 0.972 5 C -0.586 4.586 6 H 0.063 0.937 7 C -0.171 4.171 8 N -0.544 5.544 9 Si 0.762 3.238 10 H -0.202 1.202 11 H -0.206 1.206 12 H -0.207 1.207 13 N -0.221 5.221 14 C -0.078 4.078 15 C -0.149 4.149 16 C 0.032 3.968 17 H 0.110 0.890 18 C -0.057 4.057 19 H 0.044 0.956 20 C -0.140 4.140 21 C -0.003 4.003 22 N -0.335 5.335 23 C 0.418 3.582 24 O -0.479 6.479 25 O -0.279 6.279 26 C 0.087 3.913 27 C -0.238 4.238 28 C -0.190 4.190 29 C -0.234 4.234 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.120 0.880 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.122 0.878 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.111 0.889 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.587 15.343 11.488 19.500 hybrid contribution 2.412 -0.397 -0.632 2.525 sum -1.175 14.946 10.856 18.510 Atomic orbital electron populations 1.21564 0.96067 0.99791 1.00848 1.21399 0.94695 0.97960 1.00232 1.19171 0.91506 0.91764 0.86378 0.97242 1.21918 0.94094 1.37535 1.05048 0.93689 1.25456 1.00918 0.95103 0.95665 1.69975 1.35892 1.38824 1.09733 0.85919 0.82523 0.78109 0.77225 1.20213 1.20622 1.20721 1.63536 1.52831 1.01137 1.04608 1.23526 0.96708 0.95985 0.91616 1.22140 0.97468 0.94668 1.00634 1.21664 0.98419 0.79117 0.97648 0.88971 1.22548 0.98025 0.90633 0.94487 0.95555 1.22146 0.99574 0.91775 1.00526 1.22992 0.95548 0.96231 0.85542 1.46547 1.46767 1.08728 1.31461 1.17689 0.78524 0.81177 0.80859 1.90878 1.52251 1.69742 1.35070 1.86313 1.64755 1.19836 1.57040 1.22450 0.87696 0.93342 0.87836 1.22482 0.96044 1.02532 1.02790 1.21870 1.04127 0.89474 1.03523 1.22449 1.02186 1.03609 0.95150 0.93784 0.92129 0.94721 0.92023 0.95226 0.92891 0.92817 0.89682 0.89989 0.94109 0.89845 0.88220 0.90483 0.87998 0.92679 0.88709 0.92528 0.90780 0.87754 0.91580 0.92283 0.88908 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.78 9.80 71.98 0.71 -4.07 16 2 C -0.10 -4.80 5.23 30.59 0.16 -4.64 16 3 C 0.22 10.47 1.70 44.17 0.07 10.55 16 4 H 0.01 0.52 8.10 -2.39 -0.02 0.50 16 5 C -0.55 -28.99 6.20 25.60 0.16 -28.84 16 6 H 0.04 2.46 6.28 -2.91 -0.02 2.44 16 7 C 0.03 1.57 5.29 84.65 0.45 2.02 16 8 N -0.91 -50.57 11.29 21.45 0.24 -50.32 16 9 Si 0.94 43.82 29.54 68.60 2.03 45.85 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 13 N -0.50 -19.90 4.64 -836.18 -3.88 -23.77 16 14 C 0.05 1.89 5.31 86.91 0.46 2.35 16 15 C -0.11 -4.01 5.99 31.22 0.19 -3.82 16 16 C 0.14 4.54 3.12 46.69 0.15 4.68 16 17 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 18 C 0.05 2.00 2.41 46.60 0.11 2.11 16 19 H 0.03 1.19 6.61 -2.39 -0.02 1.18 16 20 C -0.10 -2.85 6.86 31.25 0.21 -2.63 16 21 C 0.12 2.95 7.10 86.99 0.62 3.56 16 22 N -0.59 -18.67 3.22 -915.17 -2.94 -21.62 16 23 C 0.66 21.81 7.96 129.79 1.03 22.84 16 24 O -0.59 -21.76 11.55 19.80 0.23 -21.53 16 25 O -0.36 -10.22 9.57 -55.42 -0.53 -10.75 16 26 C 0.12 2.71 1.13 -10.79 -0.01 2.70 16 27 C -0.18 -4.26 8.37 71.98 0.60 -3.65 16 28 C -0.13 -1.93 8.85 71.98 0.64 -1.29 16 29 C -0.18 -3.65 8.37 71.98 0.60 -3.05 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.06 2.15 7.75 -2.39 -0.02 2.13 16 32 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 33 H 0.06 3.24 5.95 -2.38 -0.01 3.22 16 34 H 0.03 1.34 7.21 -2.38 -0.02 1.32 16 35 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 36 H 0.05 2.36 5.76 -2.39 -0.01 2.35 16 37 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.10 1.96 8.14 -2.38 -0.02 1.94 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.06 1.72 5.88 -2.39 -0.01 1.71 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.06 1.61 5.88 -2.38 -0.01 1.59 16 51 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -62.76 390.96 2.17 -60.59 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 0.87 Total: 22.74 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.15 Total: -1.18 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -6.58 Total: -95.72 kcal Atomic # 8 Polarization: -31.98 SS G_CDS: -0.30 Total: -32.28 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -62.76 2.17 -60.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.893 kcal (2) G-P(sol) polarization free energy of solvation -62.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds