Wall clock time and date at job start Tue Mar 31 2020 15:30:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53000 * 109.47058 * 2 1
4 4 H 1.09001 * 109.46812 * 53.37884 * 3 2 1
5 5 C 1.50699 * 109.46497 * 173.37294 * 3 2 1
6 6 H 1.08007 * 119.99484 * 114.51537 * 5 3 2
7 7 C 1.37873 * 120.00498 * 294.50383 * 5 3 2
8 8 N 1.31514 * 119.99857 * 0.02562 * 7 5 3
9 9 Si 1.86805 * 120.00239 * 180.02562 * 7 5 3
10 10 H 1.48505 * 109.46697 * 60.00605 * 9 7 5
11 11 H 1.48500 * 109.46916 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.46907 * 300.00496 * 9 7 5
13 13 N 1.46900 * 109.47148 * 293.37599 * 3 2 1
14 14 C 1.47092 * 110.99557 * 203.57956 * 13 3 2
15 15 C 1.53451 * 107.83122 * 220.54834 * 14 13 3
16 16 C 1.54341 * 106.22580 * 2.35055 * 15 14 13
17 17 H 1.08998 * 112.08448 * 250.70612 * 16 15 14
18 18 C 1.46663 * 111.00091 * 82.93607 * 13 3 2
19 19 H 1.09000 * 110.93846 * 269.67580 * 18 13 3
20 20 C 1.53716 * 111.34003 * 33.77133 * 18 13 3
21 21 C 1.54176 * 103.38491 * 143.51175 * 20 18 13
22 22 N 1.46734 * 106.63621 * 331.59200 * 21 20 18
23 23 C 1.34772 * 125.22791 * 197.20043 * 22 21 20
24 24 O 1.21512 * 119.99880 * 180.02562 * 23 22 21
25 25 O 1.34638 * 119.99970 * 0.02719 * 23 22 21
26 26 C 1.45205 * 117.00011 * 179.97438 * 25 23 22
27 27 C 1.53001 * 109.46902 * 60.00010 * 26 25 23
28 28 C 1.52993 * 109.46992 * 180.02562 * 26 25 23
29 29 C 1.52998 * 109.47239 * 300.00436 * 26 25 23
30 30 H 1.09002 * 109.46702 * 310.04151 * 1 2 3
31 31 H 1.09004 * 109.47095 * 70.04407 * 1 2 3
32 32 H 1.09001 * 109.46761 * 190.04022 * 1 2 3
33 33 H 1.09008 * 109.46719 * 240.00112 * 2 1 3
34 34 H 1.08994 * 109.46842 * 120.00511 * 2 1 3
35 35 H 0.96998 * 119.99895 * 179.97438 * 8 7 5
36 36 H 1.08992 * 109.79445 * 340.14296 * 14 13 3
37 37 H 1.09005 * 109.78625 * 100.96485 * 14 13 3
38 38 H 1.09003 * 110.10015 * 121.53829 * 15 14 13
39 39 H 1.08992 * 110.10850 * 243.09417 * 15 14 13
40 40 H 1.09006 * 110.63550 * 25.04298 * 20 18 13
41 41 H 1.08996 * 110.63468 * 261.99254 * 20 18 13
42 42 H 1.09002 * 110.02664 * 90.90111 * 21 20 18
43 43 H 1.08997 * 110.03026 * 212.28175 * 21 20 18
44 44 H 1.09002 * 109.46709 * 60.00337 * 27 26 25
45 45 H 1.09005 * 109.46946 * 179.97438 * 27 26 25
46 46 H 1.09002 * 109.47448 * 300.00225 * 27 26 25
47 47 H 1.08998 * 109.47608 * 60.00156 * 28 26 25
48 48 H 1.09005 * 109.47079 * 180.02562 * 28 26 25
49 49 H 1.09000 * 109.47339 * 299.99637 * 28 26 25
50 50 H 1.09007 * 109.47497 * 59.99674 * 29 26 25
51 51 H 1.08998 * 109.47612 * 179.97438 * 29 26 25
52 52 H 1.09002 * 109.47271 * 299.99680 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.5832 1.9893 0.8248
5 6 3.5381 1.4455 0.1640
6 1 4.1683 1.8017 -0.6376
7 6 4.1042 0.9939 1.3372
8 7 3.3368 0.5599 2.3131
9 14 5.9611 0.9983 1.5407
10 1 6.4702 2.3871 1.4082
11 1 6.3133 0.4674 2.8820
12 1 6.5758 0.1436 0.4934
13 7 1.6852 2.0873 -1.2713
14 6 2.5857 3.2139 -1.5603
15 6 1.7389 4.3566 -2.1362
16 6 0.2768 3.8628 -2.1153
17 1 -0.1020 3.6611 -3.1172
18 6 0.3083 2.5916 -1.2386
19 1 -0.3919 1.8356 -1.5941
20 6 -0.0757 3.0786 0.1679
21 6 -0.9681 4.3046 -0.1102
22 7 -0.5244 4.8651 -1.3917
23 6 -0.8071 6.1052 -1.8373
24 8 -0.3895 6.4724 -2.9178
25 8 -1.5522 6.9372 -1.0854
26 6 -1.8165 8.2578 -1.6282
27 6 -2.5643 8.1230 -2.9562
28 6 -2.6709 9.0538 -0.6397
29 6 -0.4923 8.9882 -1.8604
30 1 -0.3633 0.6612 0.7868
31 1 -0.3633 0.3508 -0.9660
32 1 -0.3633 -1.0120 0.1792
33 1 1.8934 -0.5139 -0.8901
34 1 1.8933 -0.5139 0.8899
35 1 3.7350 0.2418 3.1384
36 1 3.0728 3.5420 -0.6421
37 1 3.3372 2.9082 -2.2883
38 1 1.8422 5.2481 -1.5175
39 1 2.0476 4.5731 -3.1589
40 1 0.8121 3.3692 0.7296
41 1 -0.6345 2.3097 0.7013
42 1 -2.0122 3.9988 -0.1779
43 1 -0.8461 5.0427 0.6825
44 1 -3.5077 7.6027 -2.7908
45 1 -2.7631 9.1144 -3.3635
46 1 -1.9552 7.5560 -3.6603
47 1 -2.1379 9.1498 0.3062
48 1 -2.8697 10.0450 -1.0474
49 1 -3.6144 8.5336 -0.4739
50 1 0.1168 8.4212 -2.5645
51 1 -0.6907 9.9793 -2.2683
52 1 0.0404 9.0842 -0.9143
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001255166727.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:30:32
Heat of formation + Delta-G solvation = -57.624813 kcal
Electronic energy + Delta-G solvation = -30239.775329 eV
Core-core repulsion = 26432.996463 eV
Total energy + Delta-G solvation = -3806.778866 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.30 seconds
Orbital eigenvalues (eV)
-40.96453 -39.81433 -37.04880 -35.61935 -34.15202 -33.38816 -32.15931 -30.62431
-29.34082 -27.56538 -27.49226 -27.36929 -26.14992 -23.57937 -23.19307 -21.88818
-20.59897 -20.12481 -19.19821 -18.66806 -17.77116 -16.59446 -16.40359 -16.09282
-15.75227 -15.23419 -14.71085 -14.46295 -14.16726 -13.93290 -13.81014 -13.56215
-13.30614 -12.79450 -12.65334 -12.56659 -12.50954 -12.27725 -12.01368 -11.98712
-11.96472 -11.70350 -11.53096 -11.50508 -11.31420 -11.19172 -11.10581 -10.89714
-10.79502 -10.67996 -10.40158 -10.36708 -10.17482 -9.94262 -9.85140 -9.54194
-9.43445 -8.78071 -8.56235 -8.43674 -7.20022 -6.07814 -4.10580 2.16813
2.95630 3.28920 3.33767 3.36865 3.93972 4.37312 4.59353 4.63257
4.68848 4.77187 4.80386 5.18693 5.20112 5.23975 5.30407 5.38660
5.39898 5.44908 5.50489 5.53290 5.56708 5.62213 5.73258 5.77842
5.82786 5.88648 5.91559 6.12567 6.16635 6.19816 6.21739 6.27076
6.32060 6.41956 6.45315 6.50537 6.54616 6.66936 6.79265 6.84200
6.98121 7.12648 7.29262 7.49656 7.62911 7.70858 7.80459 8.06347
8.27508 8.45740 8.52736 8.95996 9.53929 10.99681
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.019134 B = 0.003388 C = 0.003217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1463.021336 B = 8261.485148 C = 8700.862677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.156 4.156
2 C -0.103 4.103
3 C 0.201 3.799
4 H 0.030 0.970
5 C -0.517 4.517
6 H 0.063 0.937
7 C 0.063 3.937
8 N -0.889 5.889
9 Si 0.892 3.108
10 H -0.278 1.278
11 H -0.288 1.288
12 H -0.277 1.277
13 N -0.513 5.513
14 C 0.057 3.943
15 C -0.139 4.139
16 C 0.153 3.847
17 H 0.093 0.907
18 C 0.071 3.929
19 H 0.100 0.900
20 C -0.161 4.161
21 C 0.107 3.893
22 N -0.594 5.594
23 C 0.665 3.335
24 O -0.570 6.570
25 O -0.363 6.363
26 C 0.135 3.865
27 C -0.182 4.182
28 C -0.140 4.140
29 C -0.183 4.183
30 H 0.045 0.955
31 H 0.046 0.954
32 H 0.030 0.970
33 H 0.040 0.960
34 H 0.083 0.917
35 H 0.261 0.739
36 H 0.064 0.936
37 H 0.066 0.934
38 H 0.063 0.937
39 H 0.068 0.932
40 H 0.092 0.908
41 H 0.092 0.908
42 H 0.063 0.937
43 H 0.071 0.929
44 H 0.058 0.942
45 H 0.067 0.933
46 H 0.088 0.912
47 H 0.066 0.934
48 H 0.078 0.922
49 H 0.065 0.935
50 H 0.089 0.911
51 H 0.067 0.933
52 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.925 12.050 -5.156 17.720
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.142 4.142
3 C 0.095 3.905
4 H 0.047 0.953
5 C -0.556 4.556
6 H 0.082 0.918
7 C -0.139 4.139
8 N -0.527 5.527
9 Si 0.720 3.280
10 H -0.204 1.204
11 H -0.214 1.214
12 H -0.202 1.202
13 N -0.237 5.237
14 C -0.071 4.071
15 C -0.178 4.178
16 C 0.051 3.949
17 H 0.111 0.889
18 C -0.039 4.039
19 H 0.117 0.883
20 C -0.200 4.200
21 C -0.016 4.016
22 N -0.334 5.334
23 C 0.421 3.579
24 O -0.459 6.459
25 O -0.278 6.278
26 C 0.099 3.901
27 C -0.239 4.239
28 C -0.197 4.197
29 C -0.241 4.241
30 H 0.064 0.936
31 H 0.065 0.935
32 H 0.049 0.951
33 H 0.059 0.941
34 H 0.101 0.899
35 H 0.071 0.929
36 H 0.083 0.917
37 H 0.085 0.915
38 H 0.081 0.919
39 H 0.087 0.913
40 H 0.110 0.890
41 H 0.110 0.890
42 H 0.081 0.919
43 H 0.090 0.910
44 H 0.077 0.923
45 H 0.086 0.914
46 H 0.107 0.893
47 H 0.085 0.915
48 H 0.097 0.903
49 H 0.084 0.916
50 H 0.107 0.893
51 H 0.086 0.914
52 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -11.766 11.847 -5.694 17.641
hybrid contribution 0.909 0.615 0.871 1.402
sum -10.857 12.462 -4.823 17.217
Atomic orbital electron populations
1.22176 0.99639 0.99331 1.00100 1.21478 0.91513 0.99503 1.01673
1.19705 0.95335 0.91151 0.84279 0.95309 1.21273 0.91259 1.42644
1.00375 0.91848 1.24904 0.97929 0.95195 0.95846 1.69904 1.34761
1.42627 1.05440 0.86655 0.85798 0.78376 0.77176 1.20365 1.21370
1.20209 1.63507 0.98392 1.24827 1.37010 1.22467 0.95555 0.88700
1.00386 1.22793 0.94174 0.99197 1.01634 1.22451 0.90362 0.86332
0.95794 0.88936 1.23031 0.94803 0.93203 0.92821 0.88266 1.23240
1.00644 0.96551 0.99581 1.22074 0.98349 0.96327 0.84893 1.47322
1.54519 1.10468 1.21140 1.17505 0.77845 0.80563 0.82015 1.90874
1.57384 1.75477 1.22209 1.86317 1.66690 1.25864 1.48934 1.22017
0.95740 0.78388 0.94002 1.22508 1.00850 1.03191 0.97383 1.21845
0.99675 0.99122 0.99051 1.22515 0.97161 1.00966 1.03411 0.93573
0.93526 0.95088 0.94114 0.89902 0.92888 0.91734 0.91540 0.91864
0.91343 0.88967 0.88996 0.91857 0.91007 0.92323 0.91365 0.89300
0.91493 0.90310 0.91564 0.89266 0.91367 0.92217
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.83 8.55 37.16 0.32 -2.52 16
2 C -0.10 -2.30 5.49 -26.73 -0.15 -2.45 16
3 C 0.20 4.59 1.39 -68.87 -0.10 4.49 16
4 H 0.03 0.71 4.82 -51.93 -0.25 0.46 16
5 C -0.52 -13.28 7.14 -34.44 -0.25 -13.53 16
6 H 0.06 1.63 6.33 -52.48 -0.33 1.30 16
7 C 0.06 1.66 5.29 -17.82 -0.09 1.57 16
8 N -0.89 -24.08 11.72 55.43 0.65 -23.43 16
9 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16
10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16
12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16
13 N -0.51 -10.20 4.97 -218.48 -1.09 -11.29 16
14 C 0.06 1.10 5.23 -3.49 -0.02 1.08 16
15 C -0.14 -2.36 6.20 -25.80 -0.16 -2.52 16
16 C 0.15 2.46 3.92 -66.02 -0.26 2.20 16
17 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16
18 C 0.07 1.19 2.67 -66.71 -0.18 1.01 16
19 H 0.10 1.59 5.80 -51.93 -0.30 1.29 16
20 C -0.16 -2.58 4.69 -25.74 -0.12 -2.70 16
21 C 0.11 1.50 6.83 -3.30 -0.02 1.48 16
22 N -0.59 -9.20 2.80 -168.67 -0.47 -9.68 16
23 C 0.67 10.59 7.60 54.05 0.41 11.00 16
24 O -0.57 -9.86 11.95 -19.28 -0.23 -10.09 16
25 O -0.36 -5.15 9.46 -40.32 -0.38 -5.53 16
26 C 0.14 1.54 1.13 -90.62 -0.10 1.44 16
27 C -0.18 -1.96 8.37 37.16 0.31 -1.65 16
28 C -0.14 -1.18 8.85 37.15 0.33 -0.85 16
29 C -0.18 -2.07 8.37 37.16 0.31 -1.76 16
30 H 0.05 0.82 5.58 -51.93 -0.29 0.53 16
31 H 0.05 0.78 5.39 -51.93 -0.28 0.50 16
32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16
33 H 0.04 0.93 8.14 -51.92 -0.42 0.50 16
34 H 0.08 2.09 6.40 -51.93 -0.33 1.75 16
35 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16
36 H 0.06 1.39 6.58 -51.93 -0.34 1.05 16
37 H 0.07 1.29 7.93 -51.93 -0.41 0.87 16
38 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16
39 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16
40 H 0.09 1.74 6.32 -51.93 -0.33 1.41 16
41 H 0.09 1.41 5.59 -51.93 -0.29 1.12 16
42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
43 H 0.07 0.98 8.13 -51.93 -0.42 0.56 16
44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16
46 H 0.09 1.18 5.88 -51.93 -0.31 0.87 16
47 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16
48 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
49 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16
50 H 0.09 1.24 5.88 -51.92 -0.31 0.93 16
51 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
52 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
LS Contribution 377.86 15.07 5.69 5.69
Total: -1.00 -27.56 377.86 -9.41 -36.97
By element:
Atomic # 1 Polarization: 14.20 SS G_CDS: -8.80 Total: 5.40 kcal
Atomic # 6 Polarization: -3.94 SS G_CDS: 0.24 Total: -3.70 kcal
Atomic # 7 Polarization: -43.49 SS G_CDS: -0.91 Total: -44.39 kcal
Atomic # 8 Polarization: -15.01 SS G_CDS: -0.61 Total: -15.62 kcal
Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -27.56 -9.41 -36.97 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255166727.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.654 kcal
(2) G-P(sol) polarization free energy of solvation -27.561 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.215 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) -57.625 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.30 seconds