Wall clock time and date at job start Tue Mar 31 2020 15:30:30
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.53000 * 109.47058 * 2 1
4 4 H 1.09001 * 109.46812 * 53.37884 * 3 2 1
5 5 C 1.50699 * 109.46497 * 173.37294 * 3 2 1
6 6 H 1.08007 * 119.99484 * 114.51537 * 5 3 2
7 7 C 1.37873 * 120.00498 * 294.50383 * 5 3 2
8 8 N 1.31514 * 119.99857 * 0.02562 * 7 5 3
9 9 Si 1.86805 * 120.00239 * 180.02562 * 7 5 3
10 10 H 1.48505 * 109.46697 * 60.00605 * 9 7 5
11 11 H 1.48500 * 109.46916 * 180.02562 * 9 7 5
12 12 H 1.48496 * 109.46907 * 300.00496 * 9 7 5
13 13 N 1.46900 * 109.47148 * 293.37599 * 3 2 1
14 14 C 1.47092 * 110.99557 * 203.57956 * 13 3 2
15 15 C 1.53451 * 107.83122 * 220.54834 * 14 13 3
16 16 C 1.54341 * 106.22580 * 2.35055 * 15 14 13
17 17 H 1.08998 * 112.08448 * 250.70612 * 16 15 14
18 18 C 1.46663 * 111.00091 * 82.93607 * 13 3 2
19 19 H 1.09000 * 110.93846 * 269.67580 * 18 13 3
20 20 C 1.53716 * 111.34003 * 33.77133 * 18 13 3
21 21 C 1.54176 * 103.38491 * 143.51175 * 20 18 13
22 22 N 1.46734 * 106.63621 * 331.59200 * 21 20 18
23 23 C 1.34772 * 125.22791 * 197.20043 * 22 21 20
24 24 O 1.21512 * 119.99880 * 180.02562 * 23 22 21
25 25 O 1.34638 * 119.99970 * 0.02719 * 23 22 21
26 26 C 1.45205 * 117.00011 * 179.97438 * 25 23 22
27 27 C 1.53001 * 109.46902 * 60.00010 * 26 25 23
28 28 C 1.52993 * 109.46992 * 180.02562 * 26 25 23
29 29 C 1.52998 * 109.47239 * 300.00436 * 26 25 23
30 30 H 1.09002 * 109.46702 * 310.04151 * 1 2 3
31 31 H 1.09004 * 109.47095 * 70.04407 * 1 2 3
32 32 H 1.09001 * 109.46761 * 190.04022 * 1 2 3
33 33 H 1.09008 * 109.46719 * 240.00112 * 2 1 3
34 34 H 1.08994 * 109.46842 * 120.00511 * 2 1 3
35 35 H 0.96998 * 119.99895 * 179.97438 * 8 7 5
36 36 H 1.08992 * 109.79445 * 340.14296 * 14 13 3
37 37 H 1.09005 * 109.78625 * 100.96485 * 14 13 3
38 38 H 1.09003 * 110.10015 * 121.53829 * 15 14 13
39 39 H 1.08992 * 110.10850 * 243.09417 * 15 14 13
40 40 H 1.09006 * 110.63550 * 25.04298 * 20 18 13
41 41 H 1.08996 * 110.63468 * 261.99254 * 20 18 13
42 42 H 1.09002 * 110.02664 * 90.90111 * 21 20 18
43 43 H 1.08997 * 110.03026 * 212.28175 * 21 20 18
44 44 H 1.09002 * 109.46709 * 60.00337 * 27 26 25
45 45 H 1.09005 * 109.46946 * 179.97438 * 27 26 25
46 46 H 1.09002 * 109.47448 * 300.00225 * 27 26 25
47 47 H 1.08998 * 109.47608 * 60.00156 * 28 26 25
48 48 H 1.09005 * 109.47079 * 180.02562 * 28 26 25
49 49 H 1.09000 * 109.47339 * 299.99637 * 28 26 25
50 50 H 1.09007 * 109.47497 * 59.99674 * 29 26 25
51 51 H 1.08998 * 109.47612 * 179.97438 * 29 26 25
52 52 H 1.09002 * 109.47271 * 299.99680 * 29 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 1 1.5832 1.9893 0.8248
5 6 3.5381 1.4455 0.1640
6 1 4.1683 1.8017 -0.6376
7 6 4.1042 0.9939 1.3372
8 7 3.3368 0.5599 2.3131
9 14 5.9611 0.9983 1.5407
10 1 6.4702 2.3871 1.4082
11 1 6.3133 0.4674 2.8820
12 1 6.5758 0.1436 0.4934
13 7 1.6852 2.0873 -1.2713
14 6 2.5857 3.2139 -1.5603
15 6 1.7389 4.3566 -2.1362
16 6 0.2768 3.8628 -2.1153
17 1 -0.1020 3.6611 -3.1172
18 6 0.3083 2.5916 -1.2386
19 1 -0.3919 1.8356 -1.5941
20 6 -0.0757 3.0786 0.1679
21 6 -0.9681 4.3046 -0.1102
22 7 -0.5244 4.8651 -1.3917
23 6 -0.8071 6.1052 -1.8373
24 8 -0.3895 6.4724 -2.9178
25 8 -1.5522 6.9372 -1.0854
26 6 -1.8165 8.2578 -1.6282
27 6 -2.5643 8.1230 -2.9562
28 6 -2.6709 9.0538 -0.6397
29 6 -0.4923 8.9882 -1.8604
30 1 -0.3633 0.6612 0.7868
31 1 -0.3633 0.3508 -0.9660
32 1 -0.3633 -1.0120 0.1792
33 1 1.8934 -0.5139 -0.8901
34 1 1.8933 -0.5139 0.8899
35 1 3.7350 0.2418 3.1384
36 1 3.0728 3.5420 -0.6421
37 1 3.3372 2.9082 -2.2883
38 1 1.8422 5.2481 -1.5175
39 1 2.0476 4.5731 -3.1589
40 1 0.8121 3.3692 0.7296
41 1 -0.6345 2.3097 0.7013
42 1 -2.0122 3.9988 -0.1779
43 1 -0.8461 5.0427 0.6825
44 1 -3.5077 7.6027 -2.7908
45 1 -2.7631 9.1144 -3.3635
46 1 -1.9552 7.5560 -3.6603
47 1 -2.1379 9.1498 0.3062
48 1 -2.8697 10.0450 -1.0474
49 1 -3.6144 8.5336 -0.4739
50 1 0.1168 8.4212 -2.5645
51 1 -0.6907 9.9793 -2.2683
52 1 0.0404 9.0842 -0.9143
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001255166727.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 15:30:30
Heat of formation + Delta-G solvation = -73.115063 kcal
Electronic energy + Delta-G solvation = -30240.447037 eV
Core-core repulsion = 26432.996463 eV
Total energy + Delta-G solvation = -3807.450574 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.04 seconds
Orbital eigenvalues (eV)
-42.20847 -41.08958 -38.28430 -37.01738 -35.41144 -34.72162 -33.92878 -32.08118
-30.86052 -28.82500 -28.34661 -28.27658 -27.87132 -25.11796 -24.67181 -23.11716
-22.14925 -21.47457 -20.40496 -20.18116 -18.98534 -18.05032 -17.83653 -17.50512
-17.08820 -16.52072 -16.34159 -15.56428 -15.45082 -15.27257 -15.25272 -14.79398
-14.55973 -14.37079 -14.07277 -13.82818 -13.44643 -13.36329 -13.32100 -13.15277
-13.07672 -12.88668 -12.85903 -12.85067 -12.72677 -12.52908 -12.51076 -12.39731
-12.27584 -12.19212 -12.05301 -11.70018 -11.52550 -11.36890 -11.25078 -11.11426
-11.03115 -10.64669 -10.43953 -9.76151 -8.85011 -8.09659 -6.16433 1.04946
1.41489 1.42796 1.49255 1.74946 2.43447 2.84615 3.20784 3.32156
3.42626 3.77026 3.77753 3.81577 3.84202 3.96605 4.12713 4.14831
4.23930 4.37460 4.44917 4.54981 4.63035 4.64229 4.67684 4.75305
4.75874 4.77671 4.85113 4.87573 4.89260 4.89613 4.95415 5.04677
5.09591 5.15956 5.16537 5.18801 5.29945 5.31575 5.37159 5.43044
5.47093 5.48213 5.58257 5.70990 5.79713 5.92055 6.28819 6.38429
6.46396 6.76729 6.99265 7.26863 7.50615 8.96628
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.019134 B = 0.003388 C = 0.003217
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1463.021336 B = 8261.485148 C = 8700.862677
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.144 4.144
2 C -0.099 4.099
3 C 0.208 3.792
4 H 0.014 0.986
5 C -0.530 4.530
6 H 0.055 0.945
7 C 0.020 3.980
8 N -0.912 5.912
9 Si 0.944 3.056
10 H -0.276 1.276
11 H -0.285 1.285
12 H -0.275 1.275
13 N -0.519 5.519
14 C 0.063 3.937
15 C -0.127 4.127
16 C 0.159 3.841
17 H 0.103 0.897
18 C 0.071 3.929
19 H 0.117 0.883
20 C -0.152 4.152
21 C 0.114 3.886
22 N -0.597 5.597
23 C 0.664 3.336
24 O -0.587 6.587
25 O -0.367 6.367
26 C 0.122 3.878
27 C -0.177 4.177
28 C -0.134 4.134
29 C -0.180 4.180
30 H 0.050 0.950
31 H 0.064 0.936
32 H 0.044 0.956
33 H 0.028 0.972
34 H 0.050 0.950
35 H 0.260 0.740
36 H 0.035 0.965
37 H 0.062 0.938
38 H 0.052 0.948
39 H 0.077 0.923
40 H 0.057 0.943
41 H 0.101 0.899
42 H 0.090 0.910
43 H 0.075 0.925
44 H 0.062 0.938
45 H 0.092 0.908
46 H 0.060 0.940
47 H 0.065 0.935
48 H 0.104 0.896
49 H 0.071 0.929
50 H 0.059 0.941
51 H 0.093 0.907
52 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.875 13.237 -5.704 20.006
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.201 4.201
2 C -0.138 4.138
3 C 0.102 3.898
4 H 0.031 0.969
5 C -0.568 4.568
6 H 0.073 0.927
7 C -0.180 4.180
8 N -0.551 5.551
9 Si 0.771 3.229
10 H -0.202 1.202
11 H -0.211 1.211
12 H -0.201 1.201
13 N -0.242 5.242
14 C -0.065 4.065
15 C -0.167 4.167
16 C 0.056 3.944
17 H 0.121 0.879
18 C -0.038 4.038
19 H 0.134 0.866
20 C -0.191 4.191
21 C -0.009 4.009
22 N -0.338 5.338
23 C 0.419 3.581
24 O -0.478 6.478
25 O -0.282 6.282
26 C 0.086 3.914
27 C -0.234 4.234
28 C -0.191 4.191
29 C -0.237 4.237
30 H 0.069 0.931
31 H 0.083 0.917
32 H 0.063 0.937
33 H 0.047 0.953
34 H 0.069 0.931
35 H 0.069 0.931
36 H 0.054 0.946
37 H 0.081 0.919
38 H 0.071 0.929
39 H 0.095 0.905
40 H 0.076 0.924
41 H 0.119 0.881
42 H 0.108 0.892
43 H 0.093 0.907
44 H 0.082 0.918
45 H 0.111 0.889
46 H 0.079 0.921
47 H 0.084 0.916
48 H 0.123 0.877
49 H 0.090 0.910
50 H 0.078 0.922
51 H 0.112 0.888
52 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -13.728 13.048 -6.241 19.941
hybrid contribution 1.524 0.317 1.010 1.855
sum -12.204 13.364 -5.232 18.839
Atomic orbital electron populations
1.22042 0.96210 1.00538 1.01308 1.21319 0.94598 0.98419 0.99438
1.19494 0.93668 0.91620 0.85067 0.96852 1.21611 0.93108 1.41990
1.00116 0.92688 1.25524 1.01355 0.95262 0.95831 1.70007 1.35947
1.43496 1.05661 0.85824 0.81784 0.78249 0.77038 1.20176 1.21083
1.20060 1.63423 1.00187 1.25369 1.35254 1.22328 0.95825 0.89387
0.98988 1.22656 0.94785 0.97638 1.01585 1.22351 0.89693 0.86093
0.96226 0.87871 1.23099 0.93140 0.93958 0.93599 0.86591 1.23069
0.99755 0.97695 0.98622 1.22085 0.99072 0.95342 0.84383 1.47318
1.54510 1.10517 1.21460 1.17600 0.77866 0.80675 0.81941 1.90874
1.58056 1.75834 1.23054 1.86330 1.66065 1.26864 1.48910 1.22453
0.96258 0.77361 0.95312 1.22451 1.00270 1.04265 0.96419 1.21873
0.99102 0.99849 0.98282 1.22476 0.96819 1.01894 1.02540 0.93124
0.91701 0.93681 0.95271 0.93120 0.93094 0.94649 0.91936 0.92932
0.90457 0.92392 0.88093 0.89214 0.90677 0.91848 0.88909 0.92068
0.91606 0.87727 0.91042 0.92162 0.88787 0.92558
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -5.02 8.55 71.98 0.62 -4.41 16
2 C -0.10 -4.45 5.49 30.60 0.17 -4.28 16
3 C 0.21 9.68 1.39 44.17 0.06 9.74 16
4 H 0.01 0.70 4.82 -2.39 -0.01 0.69 16
5 C -0.53 -27.99 7.14 25.60 0.18 -27.80 16
6 H 0.05 2.93 6.33 -2.91 -0.02 2.91 16
7 C 0.02 1.06 5.29 84.65 0.45 1.51 16
8 N -0.91 -50.56 11.72 21.45 0.25 -50.30 16
9 Si 0.94 43.19 29.54 68.60 2.03 45.22 16
10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16
11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16
12 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16
13 N -0.52 -20.66 4.97 -845.15 -4.20 -24.86 16
14 C 0.06 2.49 5.23 86.42 0.45 2.94 16
15 C -0.13 -4.32 6.20 31.20 0.19 -4.12 16
16 C 0.16 4.91 3.92 45.79 0.18 5.09 16
17 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16
18 C 0.07 2.30 2.67 45.70 0.12 2.42 16
19 H 0.12 3.40 5.80 -2.39 -0.01 3.38 16
20 C -0.15 -4.75 4.69 31.23 0.15 -4.60 16
21 C 0.11 2.99 6.83 86.73 0.59 3.58 16
22 N -0.60 -17.71 2.80 -917.98 -2.57 -20.28 16
23 C 0.66 20.41 7.60 129.79 0.99 21.40 16
24 O -0.59 -20.03 11.95 19.80 0.24 -19.79 16
25 O -0.37 -9.84 9.46 -55.48 -0.52 -10.37 16
26 C 0.12 2.54 1.13 -10.80 -0.01 2.53 16
27 C -0.18 -3.45 8.37 71.98 0.60 -2.84 16
28 C -0.13 -1.86 8.85 71.98 0.64 -1.22 16
29 C -0.18 -3.83 8.37 71.98 0.60 -3.22 16
30 H 0.05 1.71 5.58 -2.39 -0.01 1.70 16
31 H 0.06 2.01 5.39 -2.38 -0.01 2.00 16
32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16
33 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16
34 H 0.05 2.60 6.40 -2.39 -0.02 2.59 16
35 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16
36 H 0.04 1.59 6.58 -2.39 -0.02 1.57 16
37 H 0.06 2.47 7.93 -2.38 -0.02 2.46 16
38 H 0.05 1.89 7.73 -2.39 -0.02 1.87 16
39 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16
40 H 0.06 2.23 6.32 -2.38 -0.02 2.22 16
41 H 0.10 2.95 5.59 -2.39 -0.01 2.94 16
42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16
43 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16
44 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16
45 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16
46 H 0.06 1.56 5.88 -2.39 -0.01 1.55 16
47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16
48 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16
49 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16
50 H 0.06 1.65 5.88 -2.38 -0.01 1.64 16
51 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16
52 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
Total: -1.00 -60.92 377.86 2.10 -58.82
By element:
Atomic # 1 Polarization: 23.97 SS G_CDS: 0.90 Total: 24.88 kcal
Atomic # 6 Polarization: -9.29 SS G_CDS: 5.98 Total: -3.32 kcal
Atomic # 7 Polarization: -88.92 SS G_CDS: -6.52 Total: -95.44 kcal
Atomic # 8 Polarization: -29.87 SS G_CDS: -0.29 Total: -30.16 kcal
Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal
Total: -60.92 2.10 -58.82 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001255166727.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -14.300 kcal
(2) G-P(sol) polarization free energy of solvation -60.916 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.216 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.101 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.815 kcal
(6) G-S(sol) free energy of system = (1) + (5) -73.115 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.04 seconds