Wall clock time and date at job start Tue Mar 31 2020 15:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47586 * 2 1 4 4 H 1.08999 * 109.47088 * 56.47558 * 3 2 1 5 5 C 1.50697 * 109.47042 * 176.47258 * 3 2 1 6 6 H 1.08002 * 120.00128 * 119.99928 * 5 3 2 7 7 C 1.37873 * 120.00260 * 300.00166 * 5 3 2 8 8 N 1.31516 * 119.99888 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47180 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47307 * 119.99537 * 9 7 5 12 12 H 1.48499 * 109.47213 * 239.99617 * 9 7 5 13 13 N 1.46902 * 109.46879 * 296.47365 * 3 2 1 14 14 C 1.49568 * 110.99764 * 177.46271 * 13 3 2 15 15 C 1.56250 * 106.46946 * 129.71618 * 14 13 3 16 16 C 1.51456 * 100.75983 * 23.11754 * 15 14 13 17 17 H 1.08997 * 109.78235 * 71.43005 * 16 15 14 18 18 C 1.43988 * 110.99946 * 294.99025 * 13 3 2 19 19 H 1.08997 * 110.01994 * 319.45155 * 18 13 3 20 20 C 1.51571 * 124.47941 * 93.47949 * 18 13 3 21 21 C 1.56249 * 100.26059 * 154.82907 * 20 18 13 22 22 N 1.43457 * 125.48435 * 205.72071 * 16 15 14 23 23 C 1.34781 * 126.99368 * 326.85550 * 22 16 15 24 24 O 1.21508 * 120.00121 * 359.97438 * 23 22 16 25 25 O 1.34636 * 119.99706 * 180.02562 * 23 22 16 26 26 C 1.45199 * 117.00272 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.47180 * 59.99049 * 26 25 23 28 28 C 1.52999 * 109.47656 * 179.97438 * 26 25 23 29 29 C 1.53004 * 109.46709 * 299.99579 * 26 25 23 30 30 H 1.09005 * 109.47067 * 65.03094 * 1 2 3 31 31 H 1.08994 * 109.47384 * 185.03261 * 1 2 3 32 32 H 1.08998 * 109.47038 * 305.03951 * 1 2 3 33 33 H 1.09003 * 109.47110 * 239.99792 * 2 1 3 34 34 H 1.09004 * 109.47111 * 120.00151 * 2 1 3 35 35 H 0.97005 * 119.99672 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.05712 * 248.97232 * 14 13 3 37 37 H 1.09001 * 110.05785 * 10.41040 * 14 13 3 38 38 H 1.08998 * 111.15911 * 140.99278 * 15 14 13 39 39 H 1.08993 * 111.16128 * 265.24236 * 15 14 13 40 40 H 1.08991 * 111.79763 * 36.93955 * 20 18 13 41 41 H 1.09010 * 110.99330 * 272.37868 * 20 18 13 42 42 H 1.09003 * 110.04751 * 217.20311 * 21 20 18 43 43 H 1.08994 * 110.05247 * 95.72185 * 21 20 18 44 44 H 1.09007 * 109.46612 * 60.00737 * 27 26 25 45 45 H 1.09003 * 109.47204 * 180.02562 * 27 26 25 46 46 H 1.08990 * 109.47253 * 300.00567 * 27 26 25 47 47 H 1.08998 * 109.47348 * 59.99396 * 28 26 25 48 48 H 1.08995 * 109.47410 * 180.02562 * 28 26 25 49 49 H 1.09002 * 109.46628 * 299.99563 * 28 26 25 50 50 H 1.08999 * 109.47330 * 59.99981 * 29 26 25 51 51 H 1.09003 * 109.46884 * 179.97438 * 29 26 25 52 52 H 1.08993 * 109.47338 * 300.00039 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6261 1.9742 0.8567 5 6 3.5445 1.4432 0.0874 6 1 4.1310 1.8944 -0.6993 7 6 4.1724 0.8679 1.1717 8 7 3.4583 0.3188 2.1300 9 14 6.0372 0.8694 1.2804 10 1 6.6022 1.5447 0.0844 11 1 6.4611 1.5944 2.5051 12 1 6.5309 -0.5299 1.3376 13 7 1.6212 2.1099 -1.2398 14 6 2.0502 3.5427 -1.2484 15 6 2.7743 3.7802 -2.6124 16 6 2.1747 2.6685 -3.4482 17 1 1.1329 2.8968 -3.6729 18 6 2.2443 1.5041 -2.3878 19 1 3.2842 1.2652 -2.1654 20 6 1.6215 0.4006 -3.2197 21 6 2.3530 0.6317 -4.5809 22 7 2.7946 2.0565 -4.5880 23 6 3.6096 2.6487 -5.4834 24 8 3.8866 3.8261 -5.3672 25 8 4.1158 1.9359 -6.5073 26 6 4.9866 2.6384 -7.4328 27 6 6.1974 3.1884 -6.6762 28 6 5.4610 1.6722 -8.5201 29 6 4.2193 3.7948 -8.0768 30 1 -0.3633 0.4338 -0.9317 31 1 -0.3634 -1.0236 0.0901 32 1 -0.3633 0.5900 0.8414 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9001 -0.0856 2.8930 36 1 1.1798 4.1940 -1.1688 37 1 2.7355 3.7328 -0.4223 38 1 2.5273 4.7588 -3.0239 39 1 3.8528 3.6588 -2.5117 40 1 0.5445 0.5314 -3.3243 41 1 1.8581 -0.5803 -2.8073 42 1 1.6681 0.4486 -5.4089 43 1 3.2173 -0.0279 -4.6574 44 1 6.7440 2.3645 -6.2174 45 1 6.8508 3.7162 -7.3709 46 1 5.8597 3.8766 -5.9014 47 1 4.5986 1.2800 -9.0592 48 1 6.1150 2.1995 -9.2146 49 1 6.0078 0.8486 -8.0609 50 1 3.8816 4.4831 -7.3020 51 1 4.8730 4.3225 -8.7713 52 1 3.3567 3.4031 -8.6157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255166728.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:36 Heat of formation + Delta-G solvation = -53.846382 kcal Electronic energy + Delta-G solvation = -30361.321944 eV Core-core repulsion = 26554.706923 eV Total energy + Delta-G solvation = -3806.615021 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.92217 -39.78809 -37.00682 -35.78412 -34.12105 -33.51056 -31.83865 -30.81195 -29.19113 -27.51947 -27.44031 -26.63278 -26.14366 -23.70981 -22.95020 -21.66123 -20.63167 -20.34569 -19.27547 -18.87202 -17.12858 -16.70454 -16.36179 -16.13874 -15.62416 -14.99740 -14.76564 -14.37627 -14.35642 -13.99216 -13.68584 -13.19859 -13.02733 -12.94844 -12.61498 -12.52433 -12.48956 -12.23833 -11.98475 -11.95186 -11.92029 -11.77074 -11.53824 -11.34503 -11.27915 -11.21062 -11.01270 -10.88456 -10.56476 -10.49304 -10.45604 -10.34959 -10.05045 -9.91825 -9.75045 -9.65775 -9.45547 -9.06153 -8.43969 -8.38879 -7.26388 -6.04282 -4.16722 2.23302 3.02353 3.22629 3.31989 3.35911 3.83588 4.36047 4.53451 4.64044 4.67419 4.81889 5.03788 5.08723 5.21547 5.33878 5.37005 5.40284 5.42931 5.52015 5.54654 5.56866 5.66006 5.68930 5.77996 5.82199 5.86913 5.96235 6.08086 6.20941 6.23270 6.26630 6.29551 6.38003 6.41428 6.46611 6.49735 6.62375 6.65517 6.67723 6.82286 6.89008 7.04811 7.13968 7.27934 7.55472 7.71690 7.72486 7.94584 8.09061 8.15808 8.41689 8.53956 8.93123 9.50792 10.95465 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.004088 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.573967 B = 6847.078378 C = 7675.317851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.111 4.111 3 C 0.208 3.792 4 H 0.041 0.959 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.071 3.929 8 N -0.883 5.883 9 Si 0.883 3.117 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.508 5.508 14 C 0.049 3.951 15 C -0.117 4.117 16 C 0.122 3.878 17 H 0.078 0.922 18 C 0.063 3.937 19 H 0.076 0.924 20 C -0.110 4.110 21 C 0.112 3.888 22 N -0.587 5.587 23 C 0.666 3.334 24 O -0.567 6.567 25 O -0.364 6.364 26 C 0.136 3.864 27 C -0.184 4.184 28 C -0.139 4.139 29 C -0.182 4.182 30 H 0.046 0.954 31 H 0.024 0.976 32 H 0.039 0.961 33 H 0.035 0.965 34 H 0.091 0.909 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.067 0.933 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.776 1.536 -16.942 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.150 4.150 3 C 0.101 3.899 4 H 0.059 0.941 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.132 4.132 8 N -0.521 5.521 9 Si 0.711 3.289 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.232 5.232 14 C -0.079 4.079 15 C -0.156 4.156 16 C 0.018 3.982 17 H 0.096 0.904 18 C -0.048 4.048 19 H 0.094 0.906 20 C -0.148 4.148 21 C -0.010 4.010 22 N -0.326 5.326 23 C 0.421 3.579 24 O -0.457 6.457 25 O -0.279 6.279 26 C 0.099 3.901 27 C -0.241 4.241 28 C -0.197 4.197 29 C -0.239 4.239 30 H 0.065 0.935 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.110 0.890 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.097 0.903 49 H 0.085 0.915 50 H 0.107 0.893 51 H 0.086 0.914 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.132 1.801 -16.879 17.012 hybrid contribution 2.105 -0.022 0.155 2.111 sum 0.973 1.779 -16.724 16.847 Atomic orbital electron populations 1.21703 0.98803 0.98358 1.00567 1.21608 0.92229 0.99025 1.02093 1.19471 0.92877 0.91257 0.86283 0.94120 1.21729 0.92633 1.37860 1.06039 0.92433 1.24871 0.97755 0.94960 0.95566 1.69882 1.34801 1.37789 1.09601 0.86677 0.86381 0.77768 0.78043 1.19965 1.20939 1.20976 1.63569 1.55054 1.01154 1.03412 1.23456 0.98020 0.90610 0.95847 1.22240 1.00612 0.97464 0.95235 1.21808 0.95390 0.97201 0.83771 0.90425 1.22563 0.99384 0.92918 0.89971 0.90586 1.22259 0.99958 0.99992 0.92615 1.22902 0.98946 0.80475 0.98700 1.46425 1.47969 1.12525 1.25712 1.17557 0.78102 0.83150 0.79062 1.90878 1.63206 1.14973 1.76616 1.86300 1.61414 1.43451 1.36721 1.22005 0.88642 0.92085 0.87378 1.22517 0.96905 1.02532 1.02142 1.21843 1.01717 0.99291 0.96812 1.22507 1.00505 0.98821 1.02093 0.93536 0.95640 0.94176 0.94679 0.89047 0.92909 0.91671 0.90999 0.91222 0.91263 0.90233 0.89758 0.91260 0.90843 0.92196 0.91390 0.89257 0.91589 0.90339 0.91505 0.89287 0.91396 0.92352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.72 37.16 0.36 -2.26 16 2 C -0.11 -2.47 5.07 -26.73 -0.14 -2.61 16 3 C 0.21 4.82 1.70 -68.87 -0.12 4.71 16 4 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 5 C -0.54 -13.87 6.39 -34.44 -0.22 -14.09 16 6 H 0.06 1.51 6.23 -52.49 -0.33 1.18 16 7 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 8 N -0.88 -24.01 11.30 55.43 0.63 -23.38 16 9 Si 0.88 20.81 29.54 -169.99 -5.02 15.79 16 10 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 N -0.51 -10.09 4.71 -215.72 -1.02 -11.10 16 14 C 0.05 0.91 6.38 -0.59 0.00 0.91 16 15 C -0.12 -2.08 5.99 -25.77 -0.15 -2.23 16 16 C 0.12 2.09 3.14 -67.79 -0.21 1.88 16 17 H 0.08 1.30 8.13 -51.93 -0.42 0.88 16 18 C 0.06 1.15 1.55 -67.45 -0.10 1.05 16 19 H 0.08 1.67 5.69 -51.93 -0.30 1.37 16 20 C -0.11 -1.66 6.28 -25.71 -0.16 -1.82 16 21 C 0.11 1.55 7.09 -0.82 -0.01 1.54 16 22 N -0.59 -9.58 3.21 -167.81 -0.54 -10.12 16 23 C 0.67 11.23 7.96 54.06 0.43 11.66 16 24 O -0.57 -10.42 11.55 -19.28 -0.22 -10.65 16 25 O -0.36 -5.39 9.57 -40.31 -0.39 -5.78 16 26 C 0.14 1.63 1.13 -90.62 -0.10 1.53 16 27 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 28 C -0.14 -1.24 8.85 37.16 0.33 -0.91 16 29 C -0.18 -2.06 8.37 37.16 0.31 -1.75 16 30 H 0.05 0.84 7.86 -51.93 -0.41 0.43 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.75 5.50 -51.93 -0.29 0.47 16 34 H 0.09 2.32 5.98 -51.93 -0.31 2.01 16 35 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.07 1.49 6.88 -51.93 -0.36 1.13 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.27 6.81 -51.92 -0.35 0.92 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.35 5.88 -51.93 -0.31 1.04 16 47 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.09 1.24 5.88 -51.93 -0.31 0.94 16 51 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 52 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 387.91 15.07 5.85 5.85 Total: -1.00 -27.85 387.91 -9.55 -37.40 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -9.27 Total: 4.55 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 0.43 Total: -2.56 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.93 Total: -44.60 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -0.61 Total: -16.43 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -27.85 -9.55 -37.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166728.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.442 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds