Wall clock time and date at job start Tue Mar 31 2020 15:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47586 * 2 1 4 4 H 1.08999 * 109.47088 * 56.47558 * 3 2 1 5 5 C 1.50697 * 109.47042 * 176.47258 * 3 2 1 6 6 H 1.08002 * 120.00128 * 119.99928 * 5 3 2 7 7 C 1.37873 * 120.00260 * 300.00166 * 5 3 2 8 8 N 1.31516 * 119.99888 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00149 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47180 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47307 * 119.99537 * 9 7 5 12 12 H 1.48499 * 109.47213 * 239.99617 * 9 7 5 13 13 N 1.46902 * 109.46879 * 296.47365 * 3 2 1 14 14 C 1.49568 * 110.99764 * 177.46271 * 13 3 2 15 15 C 1.56250 * 106.46946 * 129.71618 * 14 13 3 16 16 C 1.51456 * 100.75983 * 23.11754 * 15 14 13 17 17 H 1.08997 * 109.78235 * 71.43005 * 16 15 14 18 18 C 1.43988 * 110.99946 * 294.99025 * 13 3 2 19 19 H 1.08997 * 110.01994 * 319.45155 * 18 13 3 20 20 C 1.51571 * 124.47941 * 93.47949 * 18 13 3 21 21 C 1.56249 * 100.26059 * 154.82907 * 20 18 13 22 22 N 1.43457 * 125.48435 * 205.72071 * 16 15 14 23 23 C 1.34781 * 126.99368 * 326.85550 * 22 16 15 24 24 O 1.21508 * 120.00121 * 359.97438 * 23 22 16 25 25 O 1.34636 * 119.99706 * 180.02562 * 23 22 16 26 26 C 1.45199 * 117.00272 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.47180 * 59.99049 * 26 25 23 28 28 C 1.52999 * 109.47656 * 179.97438 * 26 25 23 29 29 C 1.53004 * 109.46709 * 299.99579 * 26 25 23 30 30 H 1.09005 * 109.47067 * 65.03094 * 1 2 3 31 31 H 1.08994 * 109.47384 * 185.03261 * 1 2 3 32 32 H 1.08998 * 109.47038 * 305.03951 * 1 2 3 33 33 H 1.09003 * 109.47110 * 239.99792 * 2 1 3 34 34 H 1.09004 * 109.47111 * 120.00151 * 2 1 3 35 35 H 0.97005 * 119.99672 * 180.02562 * 8 7 5 36 36 H 1.08998 * 110.05712 * 248.97232 * 14 13 3 37 37 H 1.09001 * 110.05785 * 10.41040 * 14 13 3 38 38 H 1.08998 * 111.15911 * 140.99278 * 15 14 13 39 39 H 1.08993 * 111.16128 * 265.24236 * 15 14 13 40 40 H 1.08991 * 111.79763 * 36.93955 * 20 18 13 41 41 H 1.09010 * 110.99330 * 272.37868 * 20 18 13 42 42 H 1.09003 * 110.04751 * 217.20311 * 21 20 18 43 43 H 1.08994 * 110.05247 * 95.72185 * 21 20 18 44 44 H 1.09007 * 109.46612 * 60.00737 * 27 26 25 45 45 H 1.09003 * 109.47204 * 180.02562 * 27 26 25 46 46 H 1.08990 * 109.47253 * 300.00567 * 27 26 25 47 47 H 1.08998 * 109.47348 * 59.99396 * 28 26 25 48 48 H 1.08995 * 109.47410 * 180.02562 * 28 26 25 49 49 H 1.09002 * 109.46628 * 299.99563 * 28 26 25 50 50 H 1.08999 * 109.47330 * 59.99981 * 29 26 25 51 51 H 1.09003 * 109.46884 * 179.97438 * 29 26 25 52 52 H 1.08993 * 109.47338 * 300.00039 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6261 1.9742 0.8567 5 6 3.5445 1.4432 0.0874 6 1 4.1310 1.8944 -0.6993 7 6 4.1724 0.8679 1.1717 8 7 3.4583 0.3188 2.1300 9 14 6.0372 0.8694 1.2804 10 1 6.6022 1.5447 0.0844 11 1 6.4611 1.5944 2.5051 12 1 6.5309 -0.5299 1.3376 13 7 1.6212 2.1099 -1.2398 14 6 2.0502 3.5427 -1.2484 15 6 2.7743 3.7802 -2.6124 16 6 2.1747 2.6685 -3.4482 17 1 1.1329 2.8968 -3.6729 18 6 2.2443 1.5041 -2.3878 19 1 3.2842 1.2652 -2.1654 20 6 1.6215 0.4006 -3.2197 21 6 2.3530 0.6317 -4.5809 22 7 2.7946 2.0565 -4.5880 23 6 3.6096 2.6487 -5.4834 24 8 3.8866 3.8261 -5.3672 25 8 4.1158 1.9359 -6.5073 26 6 4.9866 2.6384 -7.4328 27 6 6.1974 3.1884 -6.6762 28 6 5.4610 1.6722 -8.5201 29 6 4.2193 3.7948 -8.0768 30 1 -0.3633 0.4338 -0.9317 31 1 -0.3634 -1.0236 0.0901 32 1 -0.3633 0.5900 0.8414 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.9001 -0.0856 2.8930 36 1 1.1798 4.1940 -1.1688 37 1 2.7355 3.7328 -0.4223 38 1 2.5273 4.7588 -3.0239 39 1 3.8528 3.6588 -2.5117 40 1 0.5445 0.5314 -3.3243 41 1 1.8581 -0.5803 -2.8073 42 1 1.6681 0.4486 -5.4089 43 1 3.2173 -0.0279 -4.6574 44 1 6.7440 2.3645 -6.2174 45 1 6.8508 3.7162 -7.3709 46 1 5.8597 3.8766 -5.9014 47 1 4.5986 1.2800 -9.0592 48 1 6.1150 2.1995 -9.2146 49 1 6.0078 0.8486 -8.0609 50 1 3.8816 4.4831 -7.3020 51 1 4.8730 4.3225 -8.7713 52 1 3.3567 3.4031 -8.6157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255166728.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:35 Heat of formation + Delta-G solvation = -69.669797 kcal Electronic energy + Delta-G solvation = -30362.008098 eV Core-core repulsion = 26554.706923 eV Total energy + Delta-G solvation = -3807.301176 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.22497 -41.09774 -38.33487 -37.19164 -35.51075 -34.83760 -33.67171 -32.20807 -30.75806 -28.37361 -28.29853 -28.02588 -27.99692 -25.07476 -24.65579 -22.93310 -22.00121 -21.83340 -20.86880 -20.14193 -18.59342 -18.04149 -17.99408 -17.40095 -16.98362 -16.58833 -16.09274 -15.92210 -15.54293 -15.22738 -14.89020 -14.82685 -14.55513 -14.31541 -13.96118 -13.94954 -13.43242 -13.36113 -13.32225 -13.20010 -13.04949 -12.95801 -12.89959 -12.85666 -12.76165 -12.59952 -12.45840 -12.27611 -12.23681 -12.15156 -11.92085 -11.73437 -11.49739 -11.38731 -11.36687 -11.14372 -11.02437 -10.85931 -10.41221 -9.72114 -9.00974 -8.05812 -6.25087 1.06116 1.30652 1.35477 1.43412 1.75025 2.37038 2.64670 3.13288 3.22847 3.56201 3.75931 3.75975 3.79994 3.94917 4.00269 4.08688 4.24109 4.35421 4.47818 4.51426 4.54552 4.60700 4.66565 4.68550 4.75505 4.78041 4.80544 4.83517 4.87745 4.90226 4.97745 5.03348 5.06434 5.09645 5.17956 5.20646 5.24785 5.27887 5.30400 5.34897 5.42206 5.48113 5.51343 5.54080 5.66046 5.84105 6.11443 6.18323 6.30705 6.48363 6.58129 6.96431 7.27982 7.44513 8.90202 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.004088 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.573967 B = 6847.078378 C = 7675.317851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.104 4.104 3 C 0.216 3.784 4 H 0.006 0.994 5 C -0.545 4.545 6 H 0.043 0.957 7 C 0.029 3.971 8 N -0.905 5.905 9 Si 0.935 3.065 10 H -0.282 1.282 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.499 5.499 14 C 0.049 3.951 15 C -0.108 4.108 16 C 0.131 3.869 17 H 0.093 0.907 18 C 0.060 3.940 19 H 0.036 0.964 20 C -0.102 4.102 21 C 0.116 3.884 22 N -0.594 5.594 23 C 0.661 3.339 24 O -0.589 6.589 25 O -0.365 6.365 26 C 0.123 3.877 27 C -0.181 4.181 28 C -0.133 4.133 29 C -0.177 4.177 30 H 0.061 0.939 31 H 0.044 0.956 32 H 0.029 0.971 33 H 0.040 0.960 34 H 0.058 0.942 35 H 0.261 0.739 36 H 0.089 0.911 37 H 0.043 0.957 38 H 0.082 0.918 39 H 0.040 0.960 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.100 0.900 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.104 0.896 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.092 0.908 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 0.902 -19.685 19.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.108 3.892 4 H 0.024 0.976 5 C -0.584 4.584 6 H 0.062 0.938 7 C -0.171 4.171 8 N -0.544 5.544 9 Si 0.762 3.238 10 H -0.207 1.207 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.223 5.223 14 C -0.079 4.079 15 C -0.147 4.147 16 C 0.027 3.973 17 H 0.111 0.889 18 C -0.051 4.051 19 H 0.054 0.946 20 C -0.140 4.140 21 C -0.005 4.005 22 N -0.334 5.334 23 C 0.417 3.583 24 O -0.480 6.480 25 O -0.280 6.280 26 C 0.087 3.913 27 C -0.238 4.238 28 C -0.190 4.190 29 C -0.234 4.234 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.061 0.939 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.117 0.883 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.092 0.908 48 H 0.123 0.877 49 H 0.084 0.916 50 H 0.077 0.923 51 H 0.111 0.889 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.700 1.151 -19.638 19.745 hybrid contribution 2.340 0.245 0.969 2.545 sum 0.641 1.395 -18.669 18.732 Atomic orbital electron populations 1.21566 0.96082 0.99623 1.00929 1.21429 0.94567 0.97598 1.00680 1.19221 0.91293 0.91940 0.86698 0.97584 1.21908 0.94060 1.37009 1.05399 0.93848 1.25444 1.00940 0.95136 0.95589 1.69988 1.35894 1.38577 1.09980 0.85876 0.82618 0.77774 0.77537 1.20682 1.20659 1.20357 1.63570 1.54542 1.01496 1.02646 1.23485 0.98430 0.90582 0.95392 1.22102 0.98696 0.98741 0.95123 1.21695 0.96020 0.95869 0.83765 0.88935 1.22538 0.97545 0.95081 0.89943 0.94585 1.22254 1.01012 0.98487 0.92229 1.23020 0.99582 0.79021 0.98910 1.46528 1.48009 1.13497 1.25320 1.17703 0.78026 0.83050 0.79518 1.90874 1.63841 1.16033 1.77239 1.86312 1.61626 1.43631 1.36420 1.22446 0.88057 0.93305 0.87519 1.22483 0.97556 1.01844 1.01950 1.21869 1.02412 0.98754 0.95965 1.22447 1.01237 0.98121 1.01570 0.92001 0.93655 0.95139 0.94165 0.92303 0.92921 0.89276 0.93858 0.89927 0.94131 0.88268 0.89783 0.88139 0.90600 0.92722 0.88703 0.92538 0.90776 0.87749 0.91610 0.92266 0.88911 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 9.72 71.98 0.70 -3.90 16 2 C -0.10 -4.66 5.07 30.59 0.16 -4.50 16 3 C 0.22 10.30 1.70 44.17 0.08 10.38 16 4 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 5 C -0.54 -28.84 6.39 25.60 0.16 -28.67 16 6 H 0.04 2.39 6.23 -2.91 -0.02 2.37 16 7 C 0.03 1.58 5.30 84.65 0.45 2.03 16 8 N -0.91 -50.56 11.30 21.45 0.24 -50.32 16 9 Si 0.93 43.84 29.54 68.60 2.03 45.87 16 10 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 13 N -0.50 -19.88 4.71 -836.39 -3.94 -23.82 16 14 C 0.05 1.87 6.38 86.91 0.55 2.42 16 15 C -0.11 -3.89 5.99 31.22 0.19 -3.71 16 16 C 0.13 4.37 3.14 46.69 0.15 4.51 16 17 H 0.09 2.87 8.13 -2.39 -0.02 2.85 16 18 C 0.06 2.19 1.55 46.63 0.07 2.26 16 19 H 0.04 1.63 5.69 -2.39 -0.01 1.61 16 20 C -0.10 -2.85 6.28 31.26 0.20 -2.65 16 21 C 0.12 2.93 7.09 86.99 0.62 3.54 16 22 N -0.59 -18.72 3.21 -915.23 -2.93 -21.65 16 23 C 0.66 21.92 7.96 129.79 1.03 22.95 16 24 O -0.59 -21.84 11.55 19.82 0.23 -21.61 16 25 O -0.37 -10.34 9.57 -55.45 -0.53 -10.87 16 26 C 0.12 2.74 1.13 -10.79 -0.01 2.73 16 27 C -0.18 -4.29 8.37 71.98 0.60 -3.69 16 28 C -0.13 -1.96 8.85 71.98 0.64 -1.32 16 29 C -0.18 -3.68 8.37 71.98 0.60 -3.07 16 30 H 0.06 2.08 7.86 -2.38 -0.02 2.06 16 31 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.04 1.72 5.50 -2.39 -0.01 1.70 16 34 H 0.06 3.04 5.98 -2.38 -0.01 3.02 16 35 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 36 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.04 1.88 6.88 -2.39 -0.02 1.87 16 38 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 41 H 0.08 2.38 6.81 -2.38 -0.02 2.36 16 42 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 45 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.06 1.73 5.88 -2.39 -0.01 1.72 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.06 1.62 5.88 -2.39 -0.01 1.60 16 51 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 52 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -62.83 387.91 2.15 -60.68 By element: Atomic # 1 Polarization: 21.52 SS G_CDS: 0.88 Total: 22.40 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 6.18 Total: -0.69 kcal Atomic # 7 Polarization: -89.15 SS G_CDS: -6.63 Total: -95.79 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -0.30 Total: -32.48 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -62.83 2.15 -60.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255166728.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.988 kcal (2) G-P(sol) polarization free energy of solvation -62.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds