Wall clock time and date at job start Tue Mar 31 2020 15:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47290 * 2 1 4 4 H 1.08993 * 109.47293 * 179.24112 * 3 2 1 5 5 C 1.50701 * 109.47164 * 299.24264 * 3 2 1 6 6 H 1.08001 * 119.99867 * 116.11631 * 5 3 2 7 7 C 1.37871 * 119.99906 * 296.12332 * 5 3 2 8 8 N 1.31515 * 120.00337 * 353.12888 * 7 5 3 9 9 Si 1.86804 * 119.99884 * 173.13181 * 7 5 3 10 10 H 1.48501 * 109.47317 * 269.99680 * 9 7 5 11 11 H 1.48507 * 109.47161 * 149.99965 * 9 7 5 12 12 H 1.48500 * 109.47411 * 29.99935 * 9 7 5 13 13 N 1.46904 * 109.46986 * 59.24154 * 3 2 1 14 14 C 1.46966 * 110.99789 * 178.54216 * 13 3 2 15 15 C 1.53764 * 108.95337 * 180.38557 * 14 13 3 16 16 H 1.09007 * 112.29449 * 187.31102 * 15 14 13 17 17 C 1.54694 * 107.65380 * 312.23613 * 15 14 13 18 18 C 1.54349 * 104.63362 * 87.39204 * 17 15 14 19 19 C 1.54700 * 104.62870 * 359.97438 * 18 17 15 20 20 H 1.08999 * 112.38654 * 147.78138 * 19 18 17 21 21 C 1.46961 * 110.99964 * 53.79293 * 13 3 2 22 22 N 1.48435 * 104.03447 * 25.90644 * 19 18 17 23 23 C 1.34780 * 128.45379 * 137.15823 * 22 19 18 24 24 O 1.21511 * 120.00533 * 180.02562 * 23 22 19 25 25 O 1.34641 * 119.99323 * 0.02562 * 23 22 19 26 26 C 1.45203 * 116.99854 * 179.97438 * 25 23 22 27 27 C 1.53003 * 109.46839 * 60.00239 * 26 25 23 28 28 C 1.52998 * 109.47235 * 180.02562 * 26 25 23 29 29 C 1.53003 * 109.47038 * 300.00371 * 26 25 23 30 30 H 1.08998 * 109.47130 * 305.45623 * 1 2 3 31 31 H 1.09003 * 109.46893 * 65.45445 * 1 2 3 32 32 H 1.08998 * 109.47671 * 185.45588 * 1 2 3 33 33 H 1.08995 * 109.47166 * 239.99975 * 2 1 3 34 34 H 1.09001 * 109.46654 * 120.00086 * 2 1 3 35 35 H 0.97002 * 119.99591 * 355.46200 * 8 7 5 36 36 H 1.09001 * 109.55953 * 300.23044 * 14 13 3 37 37 H 1.09000 * 109.55861 * 60.43818 * 14 13 3 38 38 H 1.09012 * 110.40293 * 206.17755 * 17 15 14 39 39 H 1.08996 * 110.40508 * 328.59815 * 17 15 14 40 40 H 1.09005 * 110.40359 * 241.20725 * 18 17 15 41 41 H 1.09000 * 110.40872 * 118.78116 * 18 17 15 42 42 H 1.08996 * 109.55698 * 299.45056 * 21 13 3 43 43 H 1.09000 * 109.55954 * 59.76814 * 21 13 3 44 44 H 1.08991 * 109.47246 * 60.00304 * 27 26 25 45 45 H 1.09001 * 109.46855 * 180.02562 * 27 26 25 46 46 H 1.08997 * 109.47014 * 299.99896 * 27 26 25 47 47 H 1.08992 * 109.47309 * 59.99777 * 28 26 25 48 48 H 1.09001 * 109.47094 * 179.97438 * 28 26 25 49 49 H 1.09005 * 109.47121 * 299.99681 * 28 26 25 50 50 H 1.08997 * 109.47410 * 59.99739 * 29 26 25 51 51 H 1.09001 * 109.47163 * 179.97438 * 29 26 25 52 52 H 1.09000 * 109.46767 * 299.99567 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0136 5 6 1.5531 2.1474 -1.2398 6 1 0.8804 2.9880 -1.1540 7 6 1.9664 1.7193 -2.4834 8 7 2.8876 0.7863 -2.5852 9 14 1.2178 2.4647 -4.0241 10 1 0.0236 1.6781 -4.4246 11 1 2.2176 2.4401 -5.1220 12 1 0.8172 3.8682 -3.7507 13 7 1.5354 2.1402 1.1902 14 6 2.0344 3.5216 1.2419 15 6 1.4872 4.2033 2.5069 16 1 1.7186 5.2681 2.5358 17 6 -0.0309 3.9141 2.5763 18 6 -0.1374 2.5665 3.3214 19 6 1.3268 2.1731 3.6286 20 1 1.4202 1.6161 4.5609 21 6 1.8665 1.3989 2.4152 22 7 2.0471 3.4704 3.6698 23 6 2.9813 3.8828 4.5493 24 8 3.4749 4.9876 4.4381 25 8 3.3676 3.0706 5.5512 26 6 4.3784 3.5804 6.4606 27 6 3.8609 4.8511 7.1377 28 6 4.6868 2.5246 7.5241 29 6 5.6529 3.9025 5.6777 30 1 -0.3633 0.5961 0.8371 31 1 -0.3633 0.4269 -0.9348 32 1 -0.3634 -1.0230 0.0977 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.3234 0.4461 -1.7881 36 1 3.1239 3.5152 1.2731 37 1 1.6979 4.0644 0.3585 38 1 -0.5420 4.6985 3.1347 39 1 -0.4475 3.8276 1.5729 40 1 -0.6066 1.8163 2.6848 41 1 -0.7009 2.6873 4.2466 42 1 1.4073 0.4110 2.3792 43 1 2.9485 1.2972 2.4990 44 1 2.9531 4.6216 7.6954 45 1 4.6199 5.2340 7.8200 46 1 3.6416 5.6030 6.3798 47 1 5.0555 1.6196 7.0414 48 1 5.4459 2.9071 8.2064 49 1 3.7790 2.2947 8.0819 50 1 5.4335 4.6544 4.9198 51 1 6.4115 4.2856 6.3602 52 1 6.0215 2.9972 5.1953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:45 Heat of formation + Delta-G solvation = -66.376696 kcal Electronic energy + Delta-G solvation = -30542.236487 eV Core-core repulsion = 26735.078111 eV Total energy + Delta-G solvation = -3807.158376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.95287 -39.76017 -36.85386 -35.97073 -34.10494 -32.64871 -31.45373 -31.10014 -30.50004 -27.54070 -27.47046 -26.74791 -24.77533 -24.24274 -23.23495 -22.44911 -20.81806 -19.99747 -19.46601 -18.71628 -17.57951 -16.85160 -16.47040 -16.03829 -15.34090 -15.15852 -14.66040 -14.40652 -14.10424 -13.75125 -13.68166 -13.59120 -13.28870 -13.25185 -12.66033 -12.57562 -12.38266 -12.28619 -12.16139 -11.99767 -11.94878 -11.86298 -11.61931 -11.40460 -11.29057 -11.23221 -10.89936 -10.81716 -10.75578 -10.57839 -10.38645 -10.19853 -10.12638 -10.06664 -9.93628 -9.89319 -9.76500 -8.58434 -8.40923 -8.37824 -7.32535 -6.33664 -4.04957 2.16912 2.99282 3.43821 3.45709 3.61460 3.92709 4.47823 4.61178 4.63850 4.66349 4.79238 4.90257 4.94941 5.11529 5.26697 5.31708 5.38763 5.40139 5.43816 5.44415 5.54346 5.62834 5.68863 5.74971 5.78871 5.83642 5.87543 5.91431 6.12374 6.16750 6.17620 6.19168 6.22660 6.26833 6.30119 6.34203 6.43563 6.48410 6.53247 6.61167 6.69988 6.86217 7.02863 7.13679 7.32391 7.45093 7.74482 7.84372 7.96773 8.32733 8.47986 8.56829 8.86085 9.64083 11.01734 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003563 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.527423 B = 7855.795093 C = 7968.836921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.116 4.116 3 C 0.207 3.793 4 H -0.014 1.014 5 C -0.576 4.576 6 H 0.057 0.943 7 C 0.021 3.979 8 N -0.913 5.913 9 Si 1.066 2.934 10 H -0.288 1.288 11 H -0.288 1.288 12 H -0.289 1.289 13 N -0.514 5.514 14 C 0.059 3.941 15 C 0.150 3.850 16 H 0.101 0.899 17 C -0.112 4.112 18 C -0.111 4.111 19 C 0.131 3.869 20 H 0.097 0.903 21 C 0.042 3.958 22 N -0.604 5.604 23 C 0.672 3.328 24 O -0.576 6.576 25 O -0.364 6.364 26 C 0.136 3.864 27 C -0.182 4.182 28 C -0.139 4.139 29 C -0.183 4.183 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.018 0.982 33 H 0.066 0.934 34 H 0.021 0.979 35 H 0.269 0.731 36 H 0.024 0.976 37 H 0.099 0.901 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.023 0.977 44 H 0.058 0.942 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.068 0.932 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 3.401 17.830 18.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C 0.100 3.900 4 H 0.004 0.996 5 C -0.615 4.615 6 H 0.075 0.925 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.239 5.239 14 C -0.070 4.070 15 C 0.048 3.952 16 H 0.119 0.881 17 C -0.150 4.150 18 C -0.150 4.150 19 C 0.027 3.973 20 H 0.115 0.885 21 C -0.088 4.088 22 N -0.344 5.344 23 C 0.428 3.572 24 O -0.466 6.466 25 O -0.278 6.278 26 C 0.099 3.901 27 C -0.239 4.239 28 C -0.197 4.197 29 C -0.241 4.241 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.037 0.963 33 H 0.084 0.916 34 H 0.040 0.960 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.117 0.883 38 H 0.076 0.924 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.104 0.896 43 H 0.041 0.959 44 H 0.077 0.923 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.107 0.893 51 H 0.087 0.913 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.938 3.695 16.243 16.770 hybrid contribution 1.164 -0.042 1.774 2.123 sum -0.773 3.653 18.017 18.400 Atomic orbital electron populations 1.21454 0.96180 0.97668 1.02452 1.21646 0.96515 0.98189 0.99134 1.19375 0.92078 0.90817 0.87682 0.99612 1.21804 1.31096 1.17711 0.90864 0.92452 1.25671 0.95669 0.95688 1.01241 1.70763 1.23615 1.27314 1.33304 0.83582 0.75896 0.75493 0.75529 1.21476 1.21372 1.21498 1.62044 1.59430 1.00902 1.01537 1.22462 0.96728 0.91388 0.96440 1.22628 0.93128 0.96396 0.83021 0.88131 1.22394 0.94006 0.96415 1.02204 1.22385 0.94570 0.98387 0.99623 1.22583 0.92026 0.84272 0.98374 0.88461 1.22617 0.97731 0.97873 0.90540 1.48156 1.39101 1.19029 1.28139 1.17417 0.78960 0.82118 0.78702 1.90866 1.58341 1.21274 1.76154 1.86302 1.56603 1.46266 1.38677 1.22014 0.86058 0.94363 0.87691 1.22502 1.01418 0.98137 1.01819 1.21842 1.02318 0.98423 0.97067 1.22512 0.96173 1.03460 1.01909 0.92950 0.92211 0.96305 0.91562 0.96010 0.91937 0.95790 0.88327 0.92433 0.88701 0.89152 0.92463 0.89575 0.95888 0.92339 0.91366 0.89356 0.91498 0.90304 0.91580 0.89336 0.91346 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.33 37.16 0.35 -2.04 16 2 C -0.12 -2.55 4.84 -26.73 -0.13 -2.68 16 3 C 0.21 4.81 1.41 -68.86 -0.10 4.71 16 4 H -0.01 -0.36 7.55 -51.93 -0.39 -0.75 16 5 C -0.58 -14.73 6.68 -34.44 -0.23 -14.96 16 6 H 0.06 1.48 6.95 -52.49 -0.36 1.11 16 7 C 0.02 0.58 5.23 -17.82 -0.09 0.48 16 8 N -0.91 -26.28 12.83 55.43 0.71 -25.57 16 9 Si 1.07 24.32 29.91 -169.99 -5.08 19.23 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.51 -9.88 2.63 -226.97 -0.60 -10.48 16 14 C 0.06 1.12 4.77 -3.39 -0.02 1.10 16 15 C 0.15 2.39 4.20 -65.58 -0.28 2.12 16 16 H 0.10 1.59 7.94 -51.92 -0.41 1.18 16 17 C -0.11 -1.54 6.14 -25.13 -0.15 -1.70 16 18 C -0.11 -1.46 6.15 -25.13 -0.15 -1.61 16 19 C 0.13 1.91 4.22 -65.59 -0.28 1.63 16 20 H 0.10 1.29 7.94 -51.93 -0.41 0.88 16 21 C 0.04 0.71 4.32 -3.42 -0.01 0.70 16 22 N -0.60 -9.74 2.77 -158.51 -0.44 -10.17 16 23 C 0.67 11.34 8.04 54.06 0.43 11.77 16 24 O -0.58 -10.62 12.22 -19.28 -0.24 -10.86 16 25 O -0.36 -5.45 9.49 -40.33 -0.38 -5.83 16 26 C 0.14 1.64 1.13 -90.62 -0.10 1.54 16 27 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 28 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 29 C -0.18 -2.26 8.37 37.16 0.31 -1.95 16 30 H 0.05 0.96 6.49 -51.93 -0.34 0.63 16 31 H 0.06 1.31 7.44 -51.93 -0.39 0.92 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 1.64 6.20 -51.93 -0.32 1.32 16 34 H 0.02 0.43 6.38 -51.93 -0.33 0.10 16 35 H 0.27 7.78 6.09 -40.82 -0.25 7.54 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.10 1.98 6.65 -51.93 -0.35 1.63 16 38 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 39 H 0.09 1.40 7.81 -51.93 -0.41 0.99 16 40 H 0.09 1.23 7.16 -51.93 -0.37 0.86 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.09 1.42 6.01 -51.93 -0.31 1.11 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.23 5.88 -51.93 -0.31 0.92 16 47 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.09 1.33 5.88 -51.93 -0.31 1.03 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -29.04 383.28 -9.18 -38.23 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -9.12 Total: 3.22 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 0.19 Total: -3.55 kcal Atomic # 7 Polarization: -45.90 SS G_CDS: -0.32 Total: -46.22 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.62 Total: -16.69 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.08 Total: 19.23 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.04 -9.18 -38.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.151 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds