Wall clock time and date at job start Tue Mar 31 2020 15:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47290 * 2 1 4 4 H 1.08993 * 109.47293 * 179.24112 * 3 2 1 5 5 C 1.50701 * 109.47164 * 299.24264 * 3 2 1 6 6 H 1.08001 * 119.99867 * 116.11631 * 5 3 2 7 7 C 1.37871 * 119.99906 * 296.12332 * 5 3 2 8 8 N 1.31515 * 120.00337 * 353.12888 * 7 5 3 9 9 Si 1.86804 * 119.99884 * 173.13181 * 7 5 3 10 10 H 1.48501 * 109.47317 * 269.99680 * 9 7 5 11 11 H 1.48507 * 109.47161 * 149.99965 * 9 7 5 12 12 H 1.48500 * 109.47411 * 29.99935 * 9 7 5 13 13 N 1.46904 * 109.46986 * 59.24154 * 3 2 1 14 14 C 1.46966 * 110.99789 * 178.54216 * 13 3 2 15 15 C 1.53764 * 108.95337 * 180.38557 * 14 13 3 16 16 H 1.09007 * 112.29449 * 187.31102 * 15 14 13 17 17 C 1.54694 * 107.65380 * 312.23613 * 15 14 13 18 18 C 1.54349 * 104.63362 * 87.39204 * 17 15 14 19 19 C 1.54700 * 104.62870 * 359.97438 * 18 17 15 20 20 H 1.08999 * 112.38654 * 147.78138 * 19 18 17 21 21 C 1.46961 * 110.99964 * 53.79293 * 13 3 2 22 22 N 1.48435 * 104.03447 * 25.90644 * 19 18 17 23 23 C 1.34780 * 128.45379 * 137.15823 * 22 19 18 24 24 O 1.21511 * 120.00533 * 180.02562 * 23 22 19 25 25 O 1.34641 * 119.99323 * 0.02562 * 23 22 19 26 26 C 1.45203 * 116.99854 * 179.97438 * 25 23 22 27 27 C 1.53003 * 109.46839 * 60.00239 * 26 25 23 28 28 C 1.52998 * 109.47235 * 180.02562 * 26 25 23 29 29 C 1.53003 * 109.47038 * 300.00371 * 26 25 23 30 30 H 1.08998 * 109.47130 * 305.45623 * 1 2 3 31 31 H 1.09003 * 109.46893 * 65.45445 * 1 2 3 32 32 H 1.08998 * 109.47671 * 185.45588 * 1 2 3 33 33 H 1.08995 * 109.47166 * 239.99975 * 2 1 3 34 34 H 1.09001 * 109.46654 * 120.00086 * 2 1 3 35 35 H 0.97002 * 119.99591 * 355.46200 * 8 7 5 36 36 H 1.09001 * 109.55953 * 300.23044 * 14 13 3 37 37 H 1.09000 * 109.55861 * 60.43818 * 14 13 3 38 38 H 1.09012 * 110.40293 * 206.17755 * 17 15 14 39 39 H 1.08996 * 110.40508 * 328.59815 * 17 15 14 40 40 H 1.09005 * 110.40359 * 241.20725 * 18 17 15 41 41 H 1.09000 * 110.40872 * 118.78116 * 18 17 15 42 42 H 1.08996 * 109.55698 * 299.45056 * 21 13 3 43 43 H 1.09000 * 109.55954 * 59.76814 * 21 13 3 44 44 H 1.08991 * 109.47246 * 60.00304 * 27 26 25 45 45 H 1.09001 * 109.46855 * 180.02562 * 27 26 25 46 46 H 1.08997 * 109.47014 * 299.99896 * 27 26 25 47 47 H 1.08992 * 109.47309 * 59.99777 * 28 26 25 48 48 H 1.09001 * 109.47094 * 179.97438 * 28 26 25 49 49 H 1.09005 * 109.47121 * 299.99681 * 28 26 25 50 50 H 1.08997 * 109.47410 * 59.99739 * 29 26 25 51 51 H 1.09001 * 109.47163 * 179.97438 * 29 26 25 52 52 H 1.09000 * 109.46767 * 299.99567 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1299 1.4425 0.0136 5 6 1.5531 2.1474 -1.2398 6 1 0.8804 2.9880 -1.1540 7 6 1.9664 1.7193 -2.4834 8 7 2.8876 0.7863 -2.5852 9 14 1.2178 2.4647 -4.0241 10 1 0.0236 1.6781 -4.4246 11 1 2.2176 2.4401 -5.1220 12 1 0.8172 3.8682 -3.7507 13 7 1.5354 2.1402 1.1902 14 6 2.0344 3.5216 1.2419 15 6 1.4872 4.2033 2.5069 16 1 1.7186 5.2681 2.5358 17 6 -0.0309 3.9141 2.5763 18 6 -0.1374 2.5665 3.3214 19 6 1.3268 2.1731 3.6286 20 1 1.4202 1.6161 4.5609 21 6 1.8665 1.3989 2.4152 22 7 2.0471 3.4704 3.6698 23 6 2.9813 3.8828 4.5493 24 8 3.4749 4.9876 4.4381 25 8 3.3676 3.0706 5.5512 26 6 4.3784 3.5804 6.4606 27 6 3.8609 4.8511 7.1377 28 6 4.6868 2.5246 7.5241 29 6 5.6529 3.9025 5.6777 30 1 -0.3633 0.5961 0.8371 31 1 -0.3633 0.4269 -0.9348 32 1 -0.3634 -1.0230 0.0977 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 3.3234 0.4461 -1.7881 36 1 3.1239 3.5152 1.2731 37 1 1.6979 4.0644 0.3585 38 1 -0.5420 4.6985 3.1347 39 1 -0.4475 3.8276 1.5729 40 1 -0.6066 1.8163 2.6848 41 1 -0.7009 2.6873 4.2466 42 1 1.4073 0.4110 2.3792 43 1 2.9485 1.2972 2.4990 44 1 2.9531 4.6216 7.6954 45 1 4.6199 5.2340 7.8200 46 1 3.6416 5.6030 6.3798 47 1 5.0555 1.6196 7.0414 48 1 5.4459 2.9071 8.2064 49 1 3.7790 2.2947 8.0819 50 1 5.4335 4.6544 4.9198 51 1 6.4115 4.2856 6.3602 52 1 6.0215 2.9972 5.1953 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167222.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:44 Heat of formation + Delta-G solvation = -81.902666 kcal Electronic energy + Delta-G solvation = -30542.909743 eV Core-core repulsion = 26735.078111 eV Total energy + Delta-G solvation = -3807.831633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.23423 -41.03080 -38.26866 -37.47664 -35.18789 -34.45532 -33.01321 -32.29546 -32.07089 -28.47417 -28.41395 -28.32311 -26.45573 -25.68834 -24.89187 -23.81097 -22.06345 -21.20415 -21.16789 -19.96051 -19.02463 -18.62659 -17.62107 -17.30255 -16.79197 -16.53383 -16.05620 -15.60504 -15.53757 -15.43542 -15.20953 -14.97757 -14.55775 -14.46728 -14.06605 -13.79233 -13.71643 -13.46142 -13.34383 -13.26774 -13.11274 -12.94326 -12.91263 -12.89765 -12.62503 -12.50948 -12.35361 -12.31458 -12.15777 -11.94010 -11.89283 -11.84558 -11.66309 -11.50335 -11.43444 -11.24987 -11.12442 -10.48876 -10.41532 -9.83403 -9.08061 -8.50096 -6.20915 0.98793 1.56666 1.63884 1.69418 1.80056 2.60291 2.79060 3.07475 3.28062 3.63473 3.70291 3.73376 3.75687 3.90742 3.92452 3.93055 4.10779 4.33637 4.38548 4.41082 4.51879 4.52824 4.57177 4.58160 4.61785 4.70882 4.71638 4.74504 4.79776 4.81535 4.83965 4.85556 4.90768 5.06259 5.06703 5.11678 5.17958 5.22521 5.23314 5.29396 5.30886 5.37343 5.42706 5.53033 5.57668 5.78856 5.98226 6.07145 6.40608 6.47731 6.55956 6.75331 7.20571 7.56115 8.85113 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.018985 B = 0.003563 C = 0.003513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.527423 B = 7855.795093 C = 7968.836921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C 0.211 3.789 4 H -0.063 1.063 5 C -0.571 4.571 6 H 0.056 0.944 7 C -0.028 4.028 8 N -0.942 5.942 9 Si 1.109 2.891 10 H -0.274 1.274 11 H -0.295 1.295 12 H -0.271 1.271 13 N -0.499 5.499 14 C 0.064 3.936 15 C 0.154 3.846 16 H 0.100 0.900 17 C -0.104 4.104 18 C -0.103 4.103 19 C 0.136 3.864 20 H 0.121 0.879 21 C 0.042 3.958 22 N -0.608 5.608 23 C 0.668 3.332 24 O -0.598 6.598 25 O -0.366 6.366 26 C 0.122 3.878 27 C -0.175 4.175 28 C -0.133 4.133 29 C -0.181 4.181 30 H 0.069 0.931 31 H 0.035 0.965 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.040 0.960 35 H 0.255 0.745 36 H -0.013 1.013 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.099 0.901 43 H -0.004 1.004 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.058 0.942 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.074 0.926 50 H 0.055 0.945 51 H 0.096 0.904 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.830 3.423 20.444 21.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.148 4.148 3 C 0.104 3.896 4 H -0.046 1.046 5 C -0.609 4.609 6 H 0.074 0.926 7 C -0.226 4.226 8 N -0.580 5.580 9 Si 0.932 3.068 10 H -0.200 1.200 11 H -0.221 1.221 12 H -0.196 1.196 13 N -0.223 5.223 14 C -0.065 4.065 15 C 0.052 3.948 16 H 0.118 0.882 17 C -0.142 4.142 18 C -0.142 4.142 19 C 0.034 3.966 20 H 0.138 0.862 21 C -0.087 4.087 22 N -0.349 5.349 23 C 0.424 3.576 24 O -0.490 6.490 25 O -0.281 6.281 26 C 0.086 3.914 27 C -0.232 4.232 28 C -0.190 4.190 29 C -0.238 4.238 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.005 0.995 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.117 0.883 43 H 0.014 0.986 44 H 0.085 0.915 45 H 0.112 0.888 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.093 0.907 50 H 0.074 0.926 51 H 0.115 0.885 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.046 3.713 18.895 19.677 hybrid contribution 1.944 -0.023 1.035 2.202 sum -2.102 3.690 19.930 20.377 Atomic orbital electron populations 1.21343 0.93914 0.99457 1.01880 1.21515 0.98310 0.96579 0.98405 1.19211 0.89175 0.92319 0.88940 1.04611 1.22038 1.29940 1.17234 0.91709 0.92567 1.26937 0.95525 0.95584 1.04550 1.70879 1.25350 1.29237 1.32535 0.83027 0.75480 0.75966 0.72304 1.19958 1.22123 1.19552 1.62019 1.58260 1.00796 1.01247 1.22398 0.94514 0.91597 0.98038 1.22535 0.94885 0.95938 0.81426 0.88172 1.22362 0.91649 0.97868 1.02362 1.22392 0.93295 0.97572 1.00901 1.22680 0.92761 0.83425 0.97764 0.86161 1.22722 0.96437 0.98841 0.90710 1.48246 1.39145 1.19590 1.27897 1.17600 0.78751 0.82109 0.79157 1.90862 1.58917 1.22372 1.76810 1.86312 1.57268 1.46083 1.38449 1.22471 0.85074 0.96065 0.87802 1.22436 1.02647 0.96855 1.01310 1.21868 1.03542 0.97282 0.96273 1.22481 0.97394 1.02146 1.01777 0.91166 0.94562 0.93774 0.94832 0.94193 0.93500 0.99506 0.89815 0.89962 0.89570 0.89099 0.89470 0.88253 0.98558 0.91506 0.88809 0.92329 0.91794 0.87630 0.90681 0.92625 0.88523 0.92972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.15 9.33 71.98 0.67 -3.48 16 2 C -0.11 -4.86 4.84 30.59 0.15 -4.72 16 3 C 0.21 10.21 1.41 44.17 0.06 10.27 16 4 H -0.06 -3.66 7.55 -2.39 -0.02 -3.67 16 5 C -0.57 -30.01 6.68 25.60 0.17 -29.84 16 6 H 0.06 2.93 6.95 -2.91 -0.02 2.91 16 7 C -0.03 -1.55 5.23 84.65 0.44 -1.10 16 8 N -0.94 -56.46 12.83 21.45 0.28 -56.19 16 9 Si 1.11 49.47 29.91 68.60 2.05 51.52 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 12 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 13 N -0.50 -19.46 2.63 -872.01 -2.29 -21.75 16 14 C 0.06 2.53 4.77 86.55 0.41 2.94 16 15 C 0.15 4.88 4.20 45.46 0.19 5.07 16 16 H 0.10 3.19 7.94 -2.38 -0.02 3.17 16 17 C -0.10 -2.62 6.14 31.63 0.19 -2.42 16 18 C -0.10 -2.34 6.15 31.63 0.19 -2.15 16 19 C 0.14 3.69 4.22 45.44 0.19 3.88 16 20 H 0.12 2.79 7.94 -2.39 -0.02 2.77 16 21 C 0.04 1.42 4.32 86.53 0.37 1.79 16 22 N -0.61 -19.21 2.77 -885.82 -2.46 -21.66 16 23 C 0.67 22.41 8.04 129.79 1.04 23.45 16 24 O -0.60 -22.52 12.22 19.81 0.24 -22.28 16 25 O -0.37 -10.60 9.49 -55.50 -0.53 -11.13 16 26 C 0.12 2.76 1.13 -10.79 -0.01 2.75 16 27 C -0.18 -3.64 8.37 71.98 0.60 -3.04 16 28 C -0.13 -2.00 8.85 71.98 0.64 -1.37 16 29 C -0.18 -4.38 8.37 71.98 0.60 -3.77 16 30 H 0.07 2.41 6.49 -2.39 -0.02 2.39 16 31 H 0.04 1.54 7.44 -2.39 -0.02 1.52 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.03 1.71 6.20 -2.39 -0.01 1.69 16 34 H 0.04 1.59 6.38 -2.39 -0.02 1.58 16 35 H 0.25 15.64 6.09 -92.71 -0.56 15.08 16 36 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 37 H 0.08 3.51 6.65 -2.39 -0.02 3.50 16 38 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.09 2.36 7.81 -2.39 -0.02 2.34 16 40 H 0.09 2.11 7.16 -2.38 -0.02 2.09 16 41 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.10 3.10 6.01 -2.39 -0.01 3.08 16 43 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 44 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.06 1.60 5.88 -2.39 -0.01 1.58 16 47 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 48 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 49 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 50 H 0.05 1.73 5.88 -2.39 -0.01 1.72 16 51 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -67.32 383.28 4.31 -63.00 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 1.09 Total: 20.21 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 5.93 Total: -1.73 kcal Atomic # 7 Polarization: -95.13 SS G_CDS: -4.47 Total: -99.60 kcal Atomic # 8 Polarization: -33.12 SS G_CDS: -0.28 Total: -33.40 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Total: -67.32 4.31 -63.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167222.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.901 kcal (2) G-P(sol) polarization free energy of solvation -67.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds