Wall clock time and date at job start Tue Mar 31 2020 15:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46957 * 2 1 4 4 H 1.08999 * 109.46899 * 54.75799 * 3 2 1 5 5 C 1.50700 * 109.46890 * 174.75479 * 3 2 1 6 6 H 1.08001 * 120.00014 * 120.00012 * 5 3 2 7 7 C 1.37878 * 120.00107 * 299.72920 * 5 3 2 8 8 N 1.31515 * 120.00232 * 0.26899 * 7 5 3 9 9 Si 1.86804 * 119.99949 * 180.27737 * 7 5 3 10 10 H 1.48495 * 109.47215 * 59.99810 * 9 7 5 11 11 H 1.48503 * 109.46824 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47098 * 299.99359 * 9 7 5 13 13 N 1.46897 * 109.47182 * 294.75391 * 3 2 1 14 14 C 1.46856 * 110.99911 * 170.75646 * 13 3 2 15 15 C 1.53038 * 109.63447 * 186.21152 * 14 13 3 16 16 C 1.53223 * 109.20554 * 300.38449 * 15 14 13 17 17 C 1.52562 * 109.18967 * 56.79785 * 16 15 14 18 18 C 1.54145 * 110.04569 * 181.79741 * 17 16 15 19 19 C 1.54579 * 101.66048 * 216.76417 * 18 17 16 20 20 N 1.46820 * 105.49446 * 25.00077 * 19 18 17 21 21 C 1.46497 * 124.36134 * 163.05175 * 20 19 18 22 22 C 1.53002 * 109.46895 * 90.00623 * 21 20 19 23 23 O 1.42893 * 109.47325 * 64.99722 * 22 21 20 24 24 C 1.42901 * 114.00355 * 179.97438 * 23 22 21 25 25 C 1.34566 * 111.27905 * 343.08031 * 20 19 18 26 26 O 1.21282 * 125.02997 * 180.68012 * 25 20 19 27 27 C 1.46948 * 111.00207 * 294.89698 * 13 3 2 28 28 H 1.08995 * 109.47674 * 65.02432 * 1 2 3 29 29 H 1.09007 * 109.47072 * 185.03471 * 1 2 3 30 30 H 1.09004 * 109.46610 * 305.02542 * 1 2 3 31 31 H 1.09001 * 109.46926 * 240.00349 * 2 1 3 32 32 H 1.08997 * 109.47398 * 120.00361 * 2 1 3 33 33 H 0.96995 * 120.00741 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.44136 * 306.25915 * 14 13 3 35 35 H 1.08994 * 109.44281 * 66.19202 * 14 13 3 36 36 H 1.09005 * 109.51675 * 60.30312 * 15 14 13 37 37 H 1.08998 * 109.51212 * 180.46252 * 15 14 13 38 38 H 1.09002 * 109.52156 * 176.71560 * 16 15 14 39 39 H 1.08998 * 109.51463 * 296.88924 * 16 15 14 40 40 H 1.08996 * 110.98829 * 334.85564 * 18 17 16 41 41 H 1.09001 * 110.98410 * 98.62789 * 18 17 16 42 42 H 1.08997 * 110.24383 * 144.01184 * 19 18 17 43 43 H 1.09001 * 110.23931 * 266.00294 * 19 18 17 44 44 H 1.08994 * 109.47599 * 210.00686 * 21 20 19 45 45 H 1.09005 * 109.47200 * 330.01219 * 21 20 19 46 46 H 1.08999 * 109.47181 * 185.00430 * 22 21 20 47 47 H 1.09007 * 109.47092 * 305.00024 * 22 21 20 48 48 H 1.09005 * 109.46923 * 60.00121 * 24 23 22 49 49 H 1.08995 * 109.47191 * 180.02562 * 24 23 22 50 50 H 1.09002 * 109.47024 * 300.00804 * 24 23 22 51 51 H 1.09003 * 109.45295 * 295.16540 * 27 13 3 52 52 H 1.09006 * 109.45292 * 55.09981 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6020 1.9827 0.8393 5 6 3.5414 1.4445 0.1299 6 1 4.1498 1.8879 -0.6444 7 6 4.1380 0.8851 1.2399 8 7 3.3972 0.3451 2.1829 9 14 5.9988 0.8945 1.4045 10 1 6.4889 2.2962 1.4018 11 1 6.3862 0.2376 2.6788 12 1 6.6003 0.1574 0.2643 13 7 1.6564 2.0974 -1.2577 14 6 1.9338 3.5387 -1.2064 15 6 1.3833 4.2134 -2.4649 16 6 2.0513 3.5989 -3.6994 17 6 1.8157 2.0916 -3.6991 18 6 2.5183 1.4467 -4.9101 19 6 1.5109 0.3425 -5.3042 20 7 0.2086 0.8046 -4.8083 21 6 -1.0817 0.2697 -5.2502 22 6 -1.4812 -0.9039 -4.3536 23 8 -1.7031 -0.4327 -3.0229 24 6 -2.0839 -1.4552 -2.1001 25 6 0.3526 1.7833 -3.8960 26 8 -0.5591 2.3356 -3.3177 27 6 2.3268 1.4691 -2.4045 28 1 -0.3634 0.4339 -0.9315 29 1 -0.3633 -1.0238 0.0902 30 1 -0.3633 0.5899 0.8416 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8169 -0.0481 2.9639 34 1 1.4566 3.9688 -0.3259 35 1 3.0104 3.6992 -1.1506 36 1 0.3056 4.0589 -2.5192 37 1 1.5975 5.2815 -2.4286 38 1 1.6209 4.0346 -4.6012 39 1 3.1222 3.8001 -3.6720 40 1 2.6435 2.1674 -5.7181 41 1 3.4773 1.0164 -4.6214 42 1 1.4826 0.2271 -6.3877 43 1 1.7814 -0.6012 -4.8306 44 1 -1.8398 1.0502 -5.1864 45 1 -0.9989 -0.0730 -6.2817 46 1 -2.3956 -1.3580 -4.7354 47 1 -0.6822 -1.6453 -4.3479 48 1 -1.2977 -2.2084 -2.0477 49 1 -2.2338 -1.0167 -1.1136 50 1 -3.0108 -1.9204 -2.4354 51 1 3.4027 1.6257 -2.3265 52 1 2.1152 0.3998 -2.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255167395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:27 Heat of formation + Delta-G solvation = -72.400744 kcal Electronic energy + Delta-G solvation = -31452.098821 eV Core-core repulsion = 27644.679222 eV Total energy + Delta-G solvation = -3807.419598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.71229 -37.94334 -37.22648 -35.86040 -34.63866 -32.68076 -31.73313 -30.27692 -29.50532 -27.93923 -26.53251 -26.07914 -24.24425 -23.85684 -23.12826 -22.27941 -20.74240 -20.11061 -19.06660 -18.15159 -16.66425 -16.42042 -16.24177 -15.73667 -15.53676 -14.91222 -14.77600 -14.38019 -14.16766 -13.87592 -13.61085 -13.35358 -13.00506 -12.90196 -12.83192 -12.67856 -12.49284 -12.28628 -11.86139 -11.70196 -11.64091 -11.55294 -11.44955 -11.27956 -11.14230 -10.96443 -10.93314 -10.72595 -10.52038 -10.31704 -10.12892 -9.93476 -9.62167 -9.48622 -9.44117 -9.17461 -8.95417 -8.76764 -8.36683 -8.29439 -6.90175 -5.91328 -4.06033 3.23029 3.29220 3.30578 3.34903 3.36854 3.97408 4.42771 4.61326 4.70369 4.91951 5.08986 5.12981 5.20432 5.28749 5.31324 5.33996 5.38970 5.49521 5.52154 5.53995 5.59764 5.69103 5.78127 5.86354 5.92320 5.98589 6.06072 6.12105 6.20552 6.40417 6.41893 6.46369 6.55825 6.62539 6.66373 6.75713 6.84590 6.88252 6.91793 7.13713 7.29182 7.36567 7.40027 7.51258 7.55868 7.71690 7.86169 8.10799 8.26545 8.46623 8.60298 8.85475 9.06064 9.61096 11.06265 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.005326 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.731811 B = 5255.701186 C = 6165.291833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 C 0.216 3.784 4 H 0.037 0.963 5 C -0.541 4.541 6 H 0.055 0.945 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.885 3.115 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.279 1.279 13 N -0.521 5.521 14 C 0.069 3.931 15 C -0.128 4.128 16 C -0.091 4.091 17 C -0.091 4.091 18 C -0.128 4.128 19 C 0.108 3.892 20 N -0.630 5.630 21 C 0.134 3.866 22 C 0.041 3.959 23 O -0.362 6.362 24 C 0.034 3.966 25 C 0.548 3.452 26 O -0.490 6.490 27 C 0.090 3.910 28 H 0.061 0.939 29 H 0.018 0.982 30 H 0.034 0.966 31 H 0.026 0.974 32 H 0.088 0.912 33 H 0.260 0.740 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.053 0.947 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.037 0.963 49 H 0.089 0.911 50 H 0.030 0.970 51 H 0.045 0.955 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.858 -1.987 -16.405 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.143 4.143 3 C 0.110 3.890 4 H 0.055 0.945 5 C -0.581 4.581 6 H 0.073 0.927 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.713 3.287 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.204 1.204 13 N -0.245 5.245 14 C -0.060 4.060 15 C -0.165 4.165 16 C -0.129 4.129 17 C -0.095 4.095 18 C -0.166 4.166 19 C -0.016 4.016 20 N -0.367 5.367 21 C 0.011 3.989 22 C -0.038 4.038 23 O -0.280 6.280 24 C -0.063 4.063 25 C 0.335 3.665 26 O -0.362 6.362 27 C -0.039 4.039 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.103 0.897 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.056 0.944 49 H 0.108 0.892 50 H 0.049 0.951 51 H 0.063 0.937 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.919 -1.657 -15.902 17.421 hybrid contribution 2.080 -0.567 0.229 2.168 sum -4.839 -2.224 -15.674 16.554 Atomic orbital electron populations 1.21791 0.98614 0.97681 1.01405 1.21526 0.92510 0.99062 1.01193 1.19251 0.92715 0.91211 0.85825 0.94514 1.21737 0.93049 1.38092 1.05180 0.92718 1.24903 0.97531 0.95177 0.95755 1.69874 1.34714 1.38506 1.09245 0.86785 0.86534 0.78151 0.77254 1.20430 1.21332 1.20446 1.62354 1.56680 1.01476 1.03953 1.21776 0.97887 0.89902 0.96430 1.21806 1.03029 0.97457 0.94253 1.21324 1.00482 0.92463 0.98643 1.21180 0.93716 0.97519 0.97055 1.22663 0.98711 0.97632 0.97643 1.21981 0.83003 0.97829 0.98739 1.48236 1.05363 1.39049 1.44035 1.21269 0.85448 0.96196 0.95993 1.22972 0.98944 0.96838 0.85025 1.88142 1.89274 1.32866 1.17706 1.22781 0.97508 0.91765 0.94209 1.20261 0.90659 0.78355 0.77219 1.90623 1.45965 1.52621 1.46951 1.21626 0.96443 0.98152 0.87687 0.91987 0.96316 0.94664 0.95501 0.89410 0.92947 0.92087 0.95318 0.89176 0.93076 0.92859 0.91887 0.90369 0.89293 0.91220 0.91690 0.89572 0.89673 0.93211 0.93552 0.94425 0.89231 0.95111 0.93668 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.79 37.16 0.33 -2.68 16 2 C -0.10 -2.54 5.16 -26.73 -0.14 -2.68 16 3 C 0.22 5.44 1.70 -68.87 -0.12 5.33 16 4 H 0.04 1.05 8.00 -51.93 -0.42 0.63 16 5 C -0.54 -14.42 7.21 -34.44 -0.25 -14.66 16 6 H 0.05 1.45 5.83 -52.49 -0.31 1.15 16 7 C 0.07 1.87 5.29 -17.82 -0.09 1.77 16 8 N -0.88 -25.04 11.30 55.43 0.63 -24.41 16 9 Si 0.88 21.06 29.54 -169.99 -5.02 16.04 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.52 -11.44 3.87 -228.35 -0.88 -12.33 16 14 C 0.07 1.42 5.16 -3.83 -0.02 1.40 16 15 C -0.13 -2.25 5.83 -26.60 -0.15 -2.40 16 16 C -0.09 -1.41 4.68 -26.84 -0.13 -1.54 16 17 C -0.09 -1.45 0.55 -155.50 -0.09 -1.54 16 18 C -0.13 -1.52 6.21 -25.30 -0.16 -1.68 16 19 C 0.11 1.18 7.36 -3.04 -0.02 1.16 16 20 N -0.63 -8.68 2.90 -172.47 -0.50 -9.18 16 21 C 0.13 1.54 6.33 -4.04 -0.03 1.51 16 22 C 0.04 0.49 6.28 37.16 0.23 0.72 16 23 O -0.36 -5.85 9.86 -35.23 -0.35 -6.20 16 24 C 0.03 0.47 10.15 101.05 1.03 1.49 16 25 C 0.55 9.49 6.22 -11.02 -0.07 9.42 16 26 O -0.49 -10.24 14.86 5.56 0.08 -10.15 16 27 C 0.09 1.76 3.41 -4.07 -0.01 1.75 16 28 H 0.06 1.41 7.15 -51.93 -0.37 1.03 16 29 H 0.02 0.36 7.50 -51.93 -0.39 -0.03 16 30 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.03 0.64 6.20 -51.93 -0.32 0.32 16 32 H 0.09 2.37 5.96 -51.93 -0.31 2.07 16 33 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 34 H 0.06 1.31 8.01 -51.93 -0.42 0.89 16 35 H 0.03 0.62 7.25 -51.93 -0.38 0.24 16 36 H 0.09 1.78 5.83 -51.93 -0.30 1.47 16 37 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.08 0.79 7.89 -51.93 -0.41 0.38 16 41 H 0.09 1.01 7.87 -51.93 -0.41 0.60 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.09 1.11 7.94 -51.93 -0.41 0.69 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 48 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.09 1.31 6.99 -51.93 -0.36 0.94 16 50 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 51 H 0.05 0.94 6.36 -51.93 -0.33 0.61 16 52 H 0.07 1.44 6.13 -51.93 -0.32 1.12 16 LS Contribution 386.77 15.07 5.83 5.83 Total: -1.00 -31.43 386.77 -9.14 -40.57 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -9.24 Total: 2.45 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: 0.31 Total: -2.63 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.76 Total: -45.91 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.26 Total: -16.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.43 -9.14 -40.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.832 kcal (2) G-P(sol) polarization free energy of solvation -31.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds