Wall clock time and date at job start Tue Mar 31 2020 15:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46957 * 2 1 4 4 H 1.08999 * 109.46899 * 54.75799 * 3 2 1 5 5 C 1.50700 * 109.46890 * 174.75479 * 3 2 1 6 6 H 1.08001 * 120.00014 * 120.00012 * 5 3 2 7 7 C 1.37878 * 120.00107 * 299.72920 * 5 3 2 8 8 N 1.31515 * 120.00232 * 0.26899 * 7 5 3 9 9 Si 1.86804 * 119.99949 * 180.27737 * 7 5 3 10 10 H 1.48495 * 109.47215 * 59.99810 * 9 7 5 11 11 H 1.48503 * 109.46824 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47098 * 299.99359 * 9 7 5 13 13 N 1.46897 * 109.47182 * 294.75391 * 3 2 1 14 14 C 1.46856 * 110.99911 * 170.75646 * 13 3 2 15 15 C 1.53038 * 109.63447 * 186.21152 * 14 13 3 16 16 C 1.53223 * 109.20554 * 300.38449 * 15 14 13 17 17 C 1.52562 * 109.18967 * 56.79785 * 16 15 14 18 18 C 1.54145 * 110.04569 * 181.79741 * 17 16 15 19 19 C 1.54579 * 101.66048 * 216.76417 * 18 17 16 20 20 N 1.46820 * 105.49446 * 25.00077 * 19 18 17 21 21 C 1.46497 * 124.36134 * 163.05175 * 20 19 18 22 22 C 1.53002 * 109.46895 * 90.00623 * 21 20 19 23 23 O 1.42893 * 109.47325 * 64.99722 * 22 21 20 24 24 C 1.42901 * 114.00355 * 179.97438 * 23 22 21 25 25 C 1.34566 * 111.27905 * 343.08031 * 20 19 18 26 26 O 1.21282 * 125.02997 * 180.68012 * 25 20 19 27 27 C 1.46948 * 111.00207 * 294.89698 * 13 3 2 28 28 H 1.08995 * 109.47674 * 65.02432 * 1 2 3 29 29 H 1.09007 * 109.47072 * 185.03471 * 1 2 3 30 30 H 1.09004 * 109.46610 * 305.02542 * 1 2 3 31 31 H 1.09001 * 109.46926 * 240.00349 * 2 1 3 32 32 H 1.08997 * 109.47398 * 120.00361 * 2 1 3 33 33 H 0.96995 * 120.00741 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.44136 * 306.25915 * 14 13 3 35 35 H 1.08994 * 109.44281 * 66.19202 * 14 13 3 36 36 H 1.09005 * 109.51675 * 60.30312 * 15 14 13 37 37 H 1.08998 * 109.51212 * 180.46252 * 15 14 13 38 38 H 1.09002 * 109.52156 * 176.71560 * 16 15 14 39 39 H 1.08998 * 109.51463 * 296.88924 * 16 15 14 40 40 H 1.08996 * 110.98829 * 334.85564 * 18 17 16 41 41 H 1.09001 * 110.98410 * 98.62789 * 18 17 16 42 42 H 1.08997 * 110.24383 * 144.01184 * 19 18 17 43 43 H 1.09001 * 110.23931 * 266.00294 * 19 18 17 44 44 H 1.08994 * 109.47599 * 210.00686 * 21 20 19 45 45 H 1.09005 * 109.47200 * 330.01219 * 21 20 19 46 46 H 1.08999 * 109.47181 * 185.00430 * 22 21 20 47 47 H 1.09007 * 109.47092 * 305.00024 * 22 21 20 48 48 H 1.09005 * 109.46923 * 60.00121 * 24 23 22 49 49 H 1.08995 * 109.47191 * 180.02562 * 24 23 22 50 50 H 1.09002 * 109.47024 * 300.00804 * 24 23 22 51 51 H 1.09003 * 109.45295 * 295.16540 * 27 13 3 52 52 H 1.09006 * 109.45292 * 55.09981 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6020 1.9827 0.8393 5 6 3.5414 1.4445 0.1299 6 1 4.1498 1.8879 -0.6444 7 6 4.1380 0.8851 1.2399 8 7 3.3972 0.3451 2.1829 9 14 5.9988 0.8945 1.4045 10 1 6.4889 2.2962 1.4018 11 1 6.3862 0.2376 2.6788 12 1 6.6003 0.1574 0.2643 13 7 1.6564 2.0974 -1.2577 14 6 1.9338 3.5387 -1.2064 15 6 1.3833 4.2134 -2.4649 16 6 2.0513 3.5989 -3.6994 17 6 1.8157 2.0916 -3.6991 18 6 2.5183 1.4467 -4.9101 19 6 1.5109 0.3425 -5.3042 20 7 0.2086 0.8046 -4.8083 21 6 -1.0817 0.2697 -5.2502 22 6 -1.4812 -0.9039 -4.3536 23 8 -1.7031 -0.4327 -3.0229 24 6 -2.0839 -1.4552 -2.1001 25 6 0.3526 1.7833 -3.8960 26 8 -0.5591 2.3356 -3.3177 27 6 2.3268 1.4691 -2.4045 28 1 -0.3634 0.4339 -0.9315 29 1 -0.3633 -1.0238 0.0902 30 1 -0.3633 0.5899 0.8416 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 3.8169 -0.0481 2.9639 34 1 1.4566 3.9688 -0.3259 35 1 3.0104 3.6992 -1.1506 36 1 0.3056 4.0589 -2.5192 37 1 1.5975 5.2815 -2.4286 38 1 1.6209 4.0346 -4.6012 39 1 3.1222 3.8001 -3.6720 40 1 2.6435 2.1674 -5.7181 41 1 3.4773 1.0164 -4.6214 42 1 1.4826 0.2271 -6.3877 43 1 1.7814 -0.6012 -4.8306 44 1 -1.8398 1.0502 -5.1864 45 1 -0.9989 -0.0730 -6.2817 46 1 -2.3956 -1.3580 -4.7354 47 1 -0.6822 -1.6453 -4.3479 48 1 -1.2977 -2.2084 -2.0477 49 1 -2.2338 -1.0167 -1.1136 50 1 -3.0108 -1.9204 -2.4354 51 1 3.4027 1.6257 -2.3265 52 1 2.1152 0.3998 -2.4075 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255167395.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:26 Heat of formation + Delta-G solvation = -92.819918 kcal Electronic energy + Delta-G solvation = -31452.984262 eV Core-core repulsion = 27644.679222 eV Total energy + Delta-G solvation = -3808.305040 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.95859 -39.31886 -38.54729 -37.12261 -36.25243 -34.13252 -33.56922 -31.97184 -30.69409 -29.06168 -28.42688 -27.21464 -25.66113 -25.52333 -24.25640 -23.90050 -21.97600 -21.47338 -20.98566 -19.48440 -18.33724 -17.72510 -17.32101 -17.10452 -16.89482 -16.46823 -15.97991 -15.85572 -15.55306 -15.34696 -15.08817 -14.87196 -14.51156 -14.44894 -14.25787 -14.07847 -13.60304 -13.40083 -13.26851 -13.23071 -13.11870 -12.96269 -12.84151 -12.74077 -12.71631 -12.52494 -12.46537 -12.05874 -12.00847 -11.98815 -11.79792 -11.60487 -11.48287 -11.17951 -10.96343 -10.80430 -10.51242 -10.40742 -10.10060 -9.42944 -8.75968 -7.97602 -6.23517 1.38994 1.40029 1.47303 1.98508 2.27382 2.41542 3.02271 3.17627 3.32778 3.65145 3.75659 3.87834 4.12496 4.18515 4.24894 4.33936 4.35101 4.41618 4.46032 4.51237 4.52666 4.56707 4.58610 4.63011 4.72635 4.75825 4.79523 4.87927 4.91290 4.94299 4.95164 5.00225 5.02295 5.03730 5.11733 5.18246 5.20552 5.27531 5.38407 5.42259 5.53732 5.60250 5.67763 5.80660 5.90736 6.08605 6.23225 6.36605 6.43805 6.48236 6.77644 6.99678 7.47669 7.62492 8.95198 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013040 B = 0.005326 C = 0.004540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.731811 B = 5255.701186 C = 6165.291833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.093 4.093 3 C 0.223 3.777 4 H -0.009 1.009 5 C -0.548 4.548 6 H 0.054 0.946 7 C 0.020 3.980 8 N -0.914 5.914 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.268 1.268 13 N -0.526 5.526 14 C 0.070 3.930 15 C -0.119 4.119 16 C -0.088 4.088 17 C -0.095 4.095 18 C -0.120 4.120 19 C 0.105 3.895 20 N -0.627 5.627 21 C 0.130 3.870 22 C 0.035 3.965 23 O -0.401 6.401 24 C 0.035 3.965 25 C 0.538 3.462 26 O -0.537 6.537 27 C 0.100 3.900 28 H 0.054 0.946 29 H 0.041 0.959 30 H 0.020 0.980 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.261 0.739 34 H 0.039 0.961 35 H 0.018 0.982 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.113 0.887 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.132 0.868 46 H 0.077 0.923 47 H 0.050 0.950 48 H 0.037 0.963 49 H 0.071 0.929 50 H 0.057 0.943 51 H 0.032 0.968 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.873 -2.723 -19.930 20.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.132 4.132 3 C 0.116 3.884 4 H 0.009 0.991 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.774 3.226 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.249 5.249 14 C -0.059 4.059 15 C -0.157 4.157 16 C -0.126 4.126 17 C -0.099 4.099 18 C -0.158 4.158 19 C -0.017 4.017 20 N -0.362 5.362 21 C 0.008 3.992 22 C -0.042 4.042 23 O -0.320 6.320 24 C -0.062 4.062 25 C 0.326 3.674 26 O -0.413 6.413 27 C -0.029 4.029 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.046 0.954 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.131 0.869 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.150 0.850 46 H 0.095 0.905 47 H 0.069 0.931 48 H 0.056 0.944 49 H 0.089 0.911 50 H 0.075 0.925 51 H 0.050 0.950 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.924 -2.421 -19.478 20.502 hybrid contribution 1.715 -0.351 1.327 2.197 sum -4.208 -2.772 -18.151 18.838 Atomic orbital electron populations 1.21561 0.96790 0.98754 1.00275 1.21326 0.93916 0.98197 0.99723 1.18994 0.91972 0.91287 0.86160 0.99127 1.21931 0.93748 1.37796 1.05219 0.92815 1.25658 1.01929 0.94908 0.95465 1.70020 1.36433 1.39186 1.09655 0.85766 0.81213 0.78171 0.77413 1.20155 1.21147 1.19351 1.62291 1.57120 1.02091 1.03421 1.21782 0.97034 0.89430 0.97611 1.21699 1.01691 0.98587 0.93703 1.21341 1.01050 0.92026 0.98173 1.21175 0.93914 0.98051 0.96744 1.22710 0.98718 0.98214 0.96161 1.22230 0.81108 0.97141 1.01236 1.48353 1.07284 1.37749 1.42783 1.21542 0.83975 0.95477 0.98212 1.23195 1.00439 0.97197 0.83404 1.88101 1.89665 1.34514 1.19741 1.22765 0.98755 0.91234 0.93420 1.20490 0.90533 0.78934 0.77454 1.90600 1.47249 1.54559 1.48884 1.21523 0.95447 0.97324 0.88597 0.92701 0.93977 0.96117 0.95411 0.92086 0.93025 0.94271 0.96427 0.91267 0.90897 0.90507 0.90664 0.87528 0.88674 0.86884 0.91837 0.91368 0.84974 0.90490 0.93129 0.94400 0.91071 0.92484 0.94990 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.79 71.98 0.63 -4.68 16 2 C -0.09 -4.73 5.16 30.59 0.16 -4.57 16 3 C 0.22 11.84 1.70 44.17 0.08 11.91 16 4 H -0.01 -0.56 8.00 -2.39 -0.02 -0.58 16 5 C -0.55 -30.08 7.21 25.60 0.18 -29.90 16 6 H 0.05 2.91 5.83 -2.91 -0.02 2.89 16 7 C 0.02 1.11 5.29 84.65 0.45 1.56 16 8 N -0.91 -53.38 11.30 21.45 0.24 -53.14 16 9 Si 0.95 43.63 29.54 68.60 2.03 45.66 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 N -0.53 -24.07 3.87 -876.38 -3.39 -27.46 16 14 C 0.07 3.02 5.16 86.32 0.45 3.46 16 15 C -0.12 -4.19 5.83 30.68 0.18 -4.01 16 16 C -0.09 -2.55 4.68 30.52 0.14 -2.41 16 17 C -0.09 -2.90 0.55 -52.83 -0.03 -2.93 16 18 C -0.12 -2.40 6.21 31.52 0.20 -2.21 16 19 C 0.10 1.87 7.36 86.86 0.64 2.51 16 20 N -0.63 -15.64 2.90 -818.07 -2.37 -18.01 16 21 C 0.13 2.61 6.33 86.38 0.55 3.16 16 22 C 0.04 0.77 6.28 71.98 0.45 1.22 16 23 O -0.40 -12.81 9.86 -148.98 -1.47 -14.28 16 24 C 0.03 0.94 10.15 113.37 1.15 2.09 16 25 C 0.54 18.12 6.22 87.73 0.55 18.67 16 26 O -0.54 -22.79 14.86 -3.03 -0.05 -22.83 16 27 C 0.10 3.94 3.41 86.12 0.29 4.23 16 28 H 0.05 2.59 7.15 -2.39 -0.02 2.57 16 29 H 0.04 1.68 7.50 -2.38 -0.02 1.66 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.03 1.37 6.20 -2.39 -0.01 1.35 16 32 H 0.06 3.44 5.96 -2.39 -0.01 3.43 16 33 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 34 H 0.04 1.80 8.01 -2.39 -0.02 1.78 16 35 H 0.02 0.78 7.25 -2.39 -0.02 0.77 16 36 H 0.07 2.79 5.83 -2.38 -0.01 2.77 16 37 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.11 1.59 7.89 -2.39 -0.02 1.57 16 41 H 0.09 1.83 7.87 -2.39 -0.02 1.81 16 42 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.65 7.94 -2.39 -0.02 1.63 16 45 H 0.13 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 48 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 49 H 0.07 2.13 6.99 -2.39 -0.02 2.11 16 50 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 51 H 0.03 1.34 6.36 -2.39 -0.02 1.32 16 52 H 0.05 2.22 6.13 -2.38 -0.01 2.21 16 Total: -1.00 -73.03 386.77 1.93 -71.10 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.88 Total: 20.87 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: 6.06 Total: -1.89 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -5.52 Total: -98.61 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -1.51 Total: -37.11 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.03 1.93 -71.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255167395.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.724 kcal (2) G-P(sol) polarization free energy of solvation -73.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds