Wall clock time and date at job start Tue Mar 31 2020 15:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47336 * 2 1 4 4 H 1.09000 * 109.47107 * 178.37387 * 3 2 1 5 5 C 1.50703 * 109.47360 * 298.37151 * 3 2 1 6 6 H 1.08000 * 120.00424 * 119.99506 * 5 3 2 7 7 C 1.37879 * 119.99855 * 299.72755 * 5 3 2 8 8 N 1.31514 * 119.99921 * 0.27281 * 7 5 3 9 9 Si 1.86800 * 120.00248 * 180.26936 * 7 5 3 10 10 H 1.48504 * 109.46577 * 60.00088 * 9 7 5 11 11 H 1.48497 * 109.47368 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47194 * 300.00202 * 9 7 5 13 13 N 1.46895 * 109.47469 * 58.36919 * 3 2 1 14 14 C 1.46857 * 110.99757 * 57.79188 * 13 3 2 15 15 C 1.53033 * 109.50399 * 185.88344 * 14 13 3 16 16 C 1.53101 * 109.29222 * 300.79410 * 15 14 13 17 17 H 1.08998 * 109.52912 * 177.73616 * 16 15 14 18 18 O 1.42867 * 109.40948 * 297.79938 * 16 15 14 19 19 C 1.42903 * 114.15500 * 180.62875 * 18 16 15 20 20 C 1.53090 * 109.40336 * 298.84929 * 19 18 16 21 21 C 1.53177 * 109.14003 * 57.66616 * 20 19 18 22 22 H 1.08999 * 109.53691 * 62.86821 * 21 20 19 23 23 C 1.50704 * 109.53983 * 183.11315 * 21 20 19 24 24 O 1.21277 * 119.99597 * 120.00063 * 23 21 20 25 25 N 1.34776 * 119.99925 * 300.00270 * 23 21 20 26 26 C 1.46499 * 119.99741 * 180.02562 * 25 23 21 27 27 C 1.46495 * 120.00253 * 359.97438 * 25 23 21 28 28 C 1.53130 * 109.20380 * 57.58504 * 16 15 14 29 29 H 1.08991 * 109.55465 * 62.84456 * 28 16 15 30 30 C 1.46835 * 111.00339 * 181.99887 * 13 3 2 31 31 H 1.09000 * 109.46967 * 305.19900 * 1 2 3 32 32 H 1.09000 * 109.46972 * 65.19085 * 1 2 3 33 33 H 1.08993 * 109.47501 * 185.19615 * 1 2 3 34 34 H 1.08998 * 109.47069 * 239.99791 * 2 1 3 35 35 H 1.09005 * 109.46717 * 119.99941 * 2 1 3 36 36 H 0.97001 * 120.00328 * 179.97438 * 8 7 5 37 37 H 1.09003 * 109.46029 * 305.89429 * 14 13 3 38 38 H 1.08996 * 109.46409 * 65.87122 * 14 13 3 39 39 H 1.09004 * 109.50294 * 60.73593 * 15 14 13 40 40 H 1.08997 * 109.50225 * 180.85017 * 15 14 13 41 41 H 1.08995 * 109.47670 * 58.82883 * 19 18 16 42 42 H 1.09001 * 109.48353 * 178.86851 * 19 18 16 43 43 H 1.08996 * 109.52954 * 177.56665 * 20 19 18 44 44 H 1.09007 * 109.52976 * 297.69812 * 20 19 18 45 45 H 1.08997 * 109.47101 * 359.97438 * 26 25 23 46 46 H 1.09005 * 109.47043 * 119.99837 * 26 25 23 47 47 H 1.09003 * 109.47082 * 239.99583 * 26 25 23 48 48 H 1.09009 * 109.47018 * 89.99808 * 27 25 23 49 49 H 1.08997 * 109.47600 * 209.99688 * 27 25 23 50 50 H 1.08996 * 109.47352 * 330.00932 * 27 25 23 51 51 H 1.09005 * 109.45952 * 294.22010 * 30 13 3 52 52 H 1.09005 * 109.45639 * 54.16186 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1296 1.4425 0.0292 5 6 1.5710 2.1411 -1.2502 6 1 0.9477 3.0200 -1.1761 7 6 1.9421 1.6616 -2.4884 8 7 2.7009 0.5912 -2.5787 9 14 1.3669 2.5320 -4.0380 10 1 1.8625 3.9319 -4.0321 11 1 1.8990 1.8240 -5.2299 12 1 -0.1174 2.5325 -4.0835 13 7 1.5185 2.1462 1.1792 14 6 1.9128 1.4622 2.4174 15 6 1.2333 2.1356 3.6118 16 6 1.6490 3.6081 3.6662 17 1 1.1358 4.1013 4.4917 18 8 3.0615 3.6957 3.8614 19 6 3.5589 5.0330 3.9418 20 6 3.2622 5.7657 2.6308 21 6 1.7526 5.7408 2.3721 22 1 1.2376 6.2800 3.1672 23 6 1.4577 6.3928 1.0458 24 8 0.9106 5.7602 0.1675 25 7 1.8020 7.6788 0.8357 26 6 1.5148 8.3128 -0.4534 27 6 2.4624 8.4431 1.8968 28 6 1.2734 4.2866 2.3458 29 1 0.1914 4.2613 2.2175 30 6 1.9497 3.5498 1.1877 31 1 -0.3633 0.5924 0.8398 32 1 -0.3633 0.4312 -0.9328 33 1 -0.3634 -1.0233 0.0931 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 2.9617 0.2536 -3.4498 37 1 1.6078 0.4169 2.3678 38 1 2.9948 1.5195 2.5353 39 1 0.1510 2.0669 3.5011 40 1 1.5377 1.6374 4.5322 41 1 3.0721 5.5528 4.7670 42 1 4.6356 5.0109 4.1104 43 1 3.6020 6.7986 2.7057 44 1 3.7816 5.2698 1.8107 45 1 1.0246 7.5943 -1.1103 46 1 0.8597 9.1701 -0.2987 47 1 2.4468 8.6454 -0.9103 48 1 3.5429 8.3296 1.8077 49 1 2.1988 9.4966 1.8038 50 1 2.1371 8.0715 2.8685 51 1 3.0318 3.5965 1.3102 52 1 1.6706 4.0211 0.2452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255168881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:30:54 Heat of formation + Delta-G solvation = -84.338445 kcal Electronic energy + Delta-G solvation = -31150.682538 eV Core-core repulsion = 27342.745282 eV Total energy + Delta-G solvation = -3807.937256 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.06989 -40.18089 -38.58693 -36.67430 -35.61257 -34.98375 -33.50128 -31.99655 -30.90065 -29.17753 -28.24846 -27.91176 -26.11524 -25.47367 -24.35039 -23.85873 -22.78388 -20.96084 -20.09742 -19.69032 -18.24418 -17.94254 -17.42510 -17.21663 -17.03899 -16.63868 -16.38193 -16.19338 -15.60677 -15.47451 -15.07836 -14.93859 -14.57567 -14.46354 -14.23395 -14.03792 -13.74002 -13.57015 -13.41352 -13.32992 -13.20103 -13.15910 -12.93614 -12.85297 -12.64980 -12.47621 -12.37511 -12.15950 -12.06363 -11.81045 -11.70837 -11.52616 -11.35501 -11.32618 -10.97679 -10.80516 -10.69225 -10.42916 -10.04535 -9.60672 -8.76570 -8.08779 -6.16251 1.33098 1.35594 1.44298 1.63245 2.08408 2.40834 2.92884 3.17749 3.32478 3.54286 3.70269 3.79362 3.91503 4.10053 4.19017 4.23120 4.32978 4.38097 4.48591 4.51464 4.52201 4.55624 4.56966 4.62779 4.70692 4.74005 4.76418 4.78308 4.84515 4.88423 4.91755 4.93079 4.96643 5.02813 5.16274 5.20585 5.26466 5.29149 5.35460 5.40302 5.50662 5.56585 5.64169 5.75911 5.82832 5.93115 6.34662 6.37837 6.42709 6.51592 6.89034 6.98525 7.26206 7.50212 8.96844 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.010711 B = 0.006024 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.505564 B = 4646.586771 C = 6599.757775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.105 4.105 3 C 0.228 3.772 4 H -0.058 1.058 5 C -0.494 4.494 6 H 0.046 0.954 7 C 0.014 3.986 8 N -0.920 5.920 9 Si 0.947 3.053 10 H -0.283 1.283 11 H -0.277 1.277 12 H -0.274 1.274 13 N -0.529 5.529 14 C 0.053 3.947 15 C -0.100 4.100 16 C 0.102 3.898 17 H 0.092 0.908 18 O -0.400 6.400 19 C 0.062 3.938 20 C -0.154 4.154 21 C -0.092 4.092 22 H 0.135 0.865 23 C 0.501 3.499 24 O -0.569 6.569 25 N -0.624 5.624 26 C 0.077 3.923 27 C 0.068 3.932 28 C -0.090 4.090 29 H 0.074 0.926 30 C 0.076 3.924 31 H 0.055 0.945 32 H 0.027 0.973 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.029 0.971 36 H 0.259 0.741 37 H 0.068 0.932 38 H 0.004 0.996 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.104 0.896 43 H 0.120 0.880 44 H 0.038 0.962 45 H 0.049 0.951 46 H 0.085 0.915 47 H 0.070 0.930 48 H 0.068 0.932 49 H 0.094 0.906 50 H 0.093 0.907 51 H -0.010 1.010 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 16.989 17.229 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.143 4.143 3 C 0.121 3.879 4 H -0.041 1.041 5 C -0.532 4.532 6 H 0.064 0.936 7 C -0.184 4.184 8 N -0.560 5.560 9 Si 0.773 3.227 10 H -0.209 1.209 11 H -0.202 1.202 12 H -0.199 1.199 13 N -0.253 5.253 14 C -0.075 4.075 15 C -0.138 4.138 16 C 0.044 3.956 17 H 0.110 0.890 18 O -0.319 6.319 19 C -0.014 4.014 20 C -0.191 4.191 21 C -0.113 4.113 22 H 0.153 0.847 23 C 0.290 3.710 24 O -0.448 6.448 25 N -0.358 5.358 26 C -0.066 4.066 27 C -0.073 4.073 28 C -0.110 4.110 29 H 0.092 0.908 30 C -0.052 4.052 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.061 0.939 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.069 0.931 37 H 0.087 0.913 38 H 0.022 0.978 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.122 0.878 43 H 0.138 0.862 44 H 0.057 0.943 45 H 0.068 0.932 46 H 0.103 0.897 47 H 0.089 0.911 48 H 0.087 0.913 49 H 0.113 0.887 50 H 0.111 0.889 51 H 0.009 0.991 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.926 16.391 16.603 23.349 hybrid contribution 0.866 0.295 -1.795 2.015 sum -0.060 16.685 14.808 22.309 Atomic orbital electron populations 1.21292 0.95530 0.98732 1.00724 1.21423 0.96562 0.97102 0.99220 1.18933 0.89204 0.91982 0.87784 1.04074 1.21215 1.29914 1.11106 0.90987 0.93582 1.25546 0.95620 0.95834 1.01405 1.70002 1.37701 1.23820 1.24523 0.85793 0.78792 0.78387 0.79722 1.20910 1.20247 1.19888 1.61992 1.59545 1.01963 1.01799 1.22056 0.96195 0.98537 0.90744 1.21607 1.01076 0.93711 0.97388 1.22153 0.81808 0.96728 0.94868 0.89017 1.87935 1.22726 1.28166 1.93104 1.22749 1.00763 0.82355 0.95528 1.22497 0.93024 1.04035 0.99562 1.21358 0.99047 0.95790 0.95120 0.84692 1.21246 0.77712 0.81852 0.90219 1.90740 1.43862 1.62985 1.47189 1.47884 1.60303 1.11344 1.16297 1.21712 1.01828 0.98033 0.85031 1.22257 0.97637 0.97330 0.90116 1.21523 1.00533 0.93101 0.95822 0.90798 1.22082 0.93951 0.89277 0.99902 0.92618 0.95423 0.93945 0.92080 0.95202 0.93140 0.91350 0.97761 0.89325 0.89155 0.89576 0.87753 0.86227 0.94329 0.93157 0.89654 0.91109 0.91324 0.88726 0.88853 0.99142 0.90392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.95 9.50 71.98 0.68 -4.27 16 2 C -0.10 -5.47 5.03 30.59 0.15 -5.31 16 3 C 0.23 12.85 1.76 44.17 0.08 12.93 16 4 H -0.06 -3.76 8.14 -2.39 -0.02 -3.78 16 5 C -0.49 -30.12 6.76 25.60 0.17 -29.95 16 6 H 0.05 2.97 6.56 -2.91 -0.02 2.95 16 7 C 0.01 0.83 5.30 84.66 0.45 1.28 16 8 N -0.92 -56.87 11.32 21.45 0.24 -56.62 16 9 Si 0.95 48.70 29.54 68.60 2.03 50.73 16 10 H -0.28 -14.63 7.11 99.48 0.71 -13.92 16 11 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 12 H -0.27 -13.82 7.11 99.48 0.71 -13.11 16 13 N -0.53 -25.12 3.59 -875.59 -3.14 -28.26 16 14 C 0.05 2.11 5.04 86.32 0.44 2.55 16 15 C -0.10 -2.95 5.82 30.64 0.18 -2.78 16 16 C 0.10 2.74 2.88 30.67 0.09 2.83 16 17 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 18 O -0.40 -11.26 9.25 -148.98 -1.38 -12.64 16 19 C 0.06 1.17 6.84 72.01 0.49 1.66 16 20 C -0.15 -3.28 4.65 30.68 0.14 -3.14 16 21 C -0.09 -2.26 1.58 -11.43 -0.02 -2.28 16 22 H 0.14 2.17 7.42 -2.39 -0.02 2.15 16 23 C 0.50 15.66 6.78 87.66 0.59 16.26 16 24 O -0.57 -25.07 12.82 -3.02 -0.04 -25.11 16 25 N -0.62 -14.09 3.27 -871.90 -2.85 -16.94 16 26 C 0.08 1.69 10.68 127.77 1.37 3.05 16 27 C 0.07 0.73 8.84 127.77 1.13 1.86 16 28 C -0.09 -2.96 1.89 -10.70 -0.02 -2.98 16 29 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 30 C 0.08 3.44 3.74 86.32 0.32 3.76 16 31 H 0.05 2.49 7.40 -2.39 -0.02 2.47 16 32 H 0.03 1.41 7.45 -2.39 -0.02 1.39 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.06 3.56 6.04 -2.39 -0.01 3.55 16 35 H 0.03 1.42 6.33 -2.38 -0.02 1.41 16 36 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 37 H 0.07 2.72 5.98 -2.39 -0.01 2.70 16 38 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.12 1.58 4.64 -2.39 -0.01 1.57 16 44 H 0.04 1.18 6.58 -2.38 -0.02 1.16 16 45 H 0.05 1.52 6.90 -2.39 -0.02 1.51 16 46 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.07 0.64 7.02 -2.38 -0.02 0.63 16 49 H 0.09 0.59 8.07 -2.39 -0.02 0.58 16 50 H 0.09 0.66 5.98 -2.39 -0.01 0.65 16 51 H -0.01 -0.47 6.08 -2.38 -0.01 -0.48 16 52 H 0.08 4.21 3.34 -2.38 -0.01 4.20 16 Total: -1.00 -81.94 371.47 2.01 -79.93 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 0.91 Total: 13.43 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 6.25 Total: -4.52 kcal Atomic # 7 Polarization: -96.07 SS G_CDS: -5.76 Total: -101.83 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.42 Total: -37.74 kcal Atomic # 14 Polarization: 48.70 SS G_CDS: 2.03 Total: 50.73 kcal Total: -81.94 2.01 -79.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255168881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.404 kcal (2) G-P(sol) polarization free energy of solvation -81.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds