Wall clock time and date at job start Tue Mar 31 2020 15:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 H 1.08999 * 109.46951 * 183.02573 * 3 2 1 5 5 C 1.50699 * 109.47301 * 63.02695 * 3 2 1 6 6 H 1.07993 * 120.00121 * 239.99550 * 5 3 2 7 7 C 1.37878 * 119.99819 * 60.00066 * 5 3 2 8 8 N 1.31515 * 120.00086 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47388 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47600 * 119.99562 * 9 7 5 12 12 H 1.48505 * 109.47424 * 239.99765 * 9 7 5 13 13 N 1.46898 * 109.47184 * 303.02807 * 3 2 1 14 14 C 1.46772 * 110.99856 * 303.50462 * 13 3 2 15 15 C 1.53163 * 109.85681 * 174.69603 * 14 13 3 16 16 C 1.52910 * 108.92424 * 58.77793 * 15 14 13 17 17 H 1.08996 * 109.29751 * 61.11682 * 16 15 14 18 18 O 1.42690 * 110.62807 * 181.67294 * 16 15 14 19 19 C 1.43057 * 113.60823 * 181.84380 * 18 16 15 20 20 C 1.53013 * 109.78197 * 299.24624 * 19 18 16 21 21 C 1.53300 * 109.50200 * 56.77309 * 20 19 18 22 22 H 1.08996 * 109.60570 * 63.17831 * 21 20 19 23 23 C 1.50701 * 109.74571 * 183.59810 * 21 20 19 24 24 O 1.21281 * 119.99827 * 103.93860 * 23 21 20 25 25 N 1.34776 * 119.99632 * 283.94085 * 23 21 20 26 26 C 1.46504 * 119.99527 * 185.49485 * 25 23 21 27 27 C 1.46499 * 120.00325 * 5.49497 * 25 23 21 28 28 C 1.52999 * 108.65969 * 303.43175 * 21 20 19 29 29 H 1.09005 * 109.49789 * 298.00661 * 28 21 20 30 30 C 1.46982 * 110.99784 * 178.81922 * 13 3 2 31 31 H 1.08997 * 109.47194 * 304.20095 * 1 2 3 32 32 H 1.08994 * 109.47212 * 64.20074 * 1 2 3 33 33 H 1.09003 * 109.46805 * 184.20197 * 1 2 3 34 34 H 1.09003 * 109.46853 * 239.99886 * 2 1 3 35 35 H 1.08995 * 109.47050 * 119.99987 * 2 1 3 36 36 H 0.96996 * 119.99789 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.40649 * 294.81462 * 14 13 3 38 38 H 1.08998 * 109.40497 * 54.57804 * 14 13 3 39 39 H 1.09000 * 109.56755 * 298.94477 * 15 14 13 40 40 H 1.09000 * 109.65850 * 178.66080 * 15 14 13 41 41 H 1.09001 * 109.41598 * 179.15843 * 19 18 16 42 42 H 1.08997 * 109.42066 * 59.34424 * 19 18 16 43 43 H 1.09007 * 109.46952 * 296.76203 * 20 19 18 44 44 H 1.09000 * 109.46385 * 176.77983 * 20 19 18 45 45 H 1.09000 * 109.47271 * 90.00246 * 26 25 23 46 46 H 1.09004 * 109.46849 * 210.00106 * 26 25 23 47 47 H 1.09000 * 109.47145 * 329.99571 * 26 25 23 48 48 H 1.08995 * 109.46969 * 5.45573 * 27 25 23 49 49 H 1.08998 * 109.47129 * 125.45808 * 27 25 23 50 50 H 1.09001 * 109.46858 * 245.46154 * 27 25 23 51 51 H 1.09000 * 109.52294 * 305.59826 * 30 13 3 52 52 H 1.09000 * 109.52758 * 65.73782 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 -0.0542 5 6 1.5999 2.1309 1.2662 6 1 0.9753 3.0103 1.2137 7 6 1.9947 1.6381 2.4919 8 7 2.7550 0.5669 2.5559 9 14 1.4486 2.4909 4.0615 10 1 0.6051 3.6643 3.7196 11 1 0.6647 1.5428 4.8931 12 1 2.6423 2.9442 4.8197 13 7 1.4915 2.1558 -1.1612 14 6 1.8310 1.4653 -2.4110 15 6 1.1383 2.1542 -3.5907 16 6 1.5873 3.6148 -3.6453 17 1 2.6660 3.6547 -3.7968 18 8 0.9327 4.3025 -4.7104 19 6 1.3385 5.6676 -4.8461 20 6 1.0110 6.4351 -3.5636 21 6 1.6902 5.7523 -2.3709 22 1 2.7724 5.7927 -2.4940 23 6 1.3000 6.4514 -1.0941 24 8 0.4861 5.9461 -0.3504 25 7 1.8556 7.6381 -0.7787 26 6 1.5689 8.2600 0.5164 27 6 2.7462 8.3061 -1.7309 28 6 1.2338 4.2930 -2.3172 29 1 0.1554 4.2544 -2.1631 30 6 1.9386 3.5558 -1.1786 31 1 -0.3633 0.5776 0.8499 32 1 -0.3633 0.4472 -0.9252 33 1 -0.3633 -1.0249 0.0753 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.0325 0.2200 3.4182 37 1 2.9107 1.4932 -2.5585 38 1 1.5013 0.4280 -2.3529 39 1 0.0576 2.1094 -3.4561 40 1 1.4115 1.6535 -4.5196 41 1 0.8102 6.1211 -5.6847 42 1 2.4121 5.7099 -5.0296 43 1 -0.0683 6.4437 -3.4109 44 1 1.3736 7.4593 -3.6506 45 1 2.3035 7.9275 1.2498 46 1 1.6190 9.3444 0.4177 47 1 0.5706 7.9709 0.8452 48 1 2.7626 7.7473 -2.6666 49 1 2.3853 9.3175 -1.9180 50 1 3.7535 8.3506 -1.3166 51 1 1.6899 4.0295 -0.2290 52 1 3.0171 3.5920 -1.3325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255170776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:04 Heat of formation + Delta-G solvation = -71.590369 kcal Electronic energy + Delta-G solvation = -30756.246038 eV Core-core repulsion = 26948.861580 eV Total energy + Delta-G solvation = -3807.384458 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.76521 -38.93165 -37.36783 -35.51673 -34.18931 -33.76870 -31.62414 -30.32350 -29.87237 -28.35080 -26.83551 -26.27583 -24.99217 -23.78261 -23.05911 -22.00555 -21.05473 -19.89897 -19.13967 -18.52694 -17.03130 -16.45448 -16.14850 -16.02932 -15.65649 -15.33618 -15.02486 -14.69461 -14.34805 -14.10536 -13.61829 -13.45254 -13.41921 -13.12384 -12.75915 -12.71735 -12.66259 -12.39882 -12.35946 -12.01860 -11.87123 -11.70536 -11.60145 -11.42959 -11.06667 -10.86614 -10.84052 -10.70047 -10.51583 -10.37695 -10.09367 -10.05619 -9.82170 -9.71387 -9.55945 -9.31165 -9.06553 -8.67972 -8.65731 -8.30011 -7.04377 -5.91787 -3.93688 2.76333 3.00588 3.35627 3.43693 3.52750 3.81437 4.43268 4.49337 4.61889 4.65833 4.82410 4.93926 5.06850 5.12832 5.16734 5.22970 5.30223 5.32924 5.39584 5.41801 5.47999 5.51094 5.56724 5.60875 5.76684 5.84039 5.85064 5.92336 6.00641 6.09430 6.17884 6.27748 6.42930 6.45168 6.56103 6.60228 6.66715 6.80963 6.85083 6.94586 7.20250 7.32185 7.35845 7.42101 7.49450 7.75603 7.84882 7.96068 8.28016 8.32717 8.43440 8.71194 9.14596 9.70307 11.14720 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.005615 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.451444 B = 4985.034472 C = 7083.541256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C 0.219 3.781 4 H -0.005 1.005 5 C -0.490 4.490 6 H 0.067 0.933 7 C 0.059 3.941 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.527 5.527 14 C 0.054 3.946 15 C -0.103 4.103 16 C 0.096 3.904 17 H 0.050 0.950 18 O -0.378 6.378 19 C 0.066 3.934 20 C -0.147 4.147 21 C -0.103 4.103 22 H 0.090 0.910 23 C 0.518 3.482 24 O -0.510 6.510 25 N -0.628 5.628 26 C 0.085 3.915 27 C 0.072 3.928 28 C -0.094 4.094 29 H 0.096 0.904 30 C 0.074 3.926 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.015 0.985 34 H 0.013 0.987 35 H 0.093 0.907 36 H 0.258 0.742 37 H 0.018 0.982 38 H 0.082 0.918 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.064 0.936 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.061 0.939 50 H 0.058 0.942 51 H 0.100 0.900 52 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 14.005 -13.587 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.150 4.150 3 C 0.113 3.887 4 H 0.012 0.988 5 C -0.528 4.528 6 H 0.085 0.915 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.717 3.283 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.214 1.214 13 N -0.251 5.251 14 C -0.075 4.075 15 C -0.141 4.141 16 C 0.038 3.962 17 H 0.068 0.932 18 O -0.297 6.297 19 C -0.011 4.011 20 C -0.185 4.185 21 C -0.125 4.125 22 H 0.108 0.892 23 C 0.305 3.695 24 O -0.383 6.383 25 N -0.364 5.364 26 C -0.058 4.058 27 C -0.071 4.071 28 C -0.114 4.114 29 H 0.114 0.886 30 C -0.054 4.054 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.034 0.966 34 H 0.032 0.968 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.036 0.964 38 H 0.100 0.900 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.080 0.920 50 H 0.076 0.924 51 H 0.118 0.882 52 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 0.066 13.513 -13.093 18.815 hybrid contribution 1.105 0.761 1.058 1.709 sum 1.171 14.274 -12.035 18.707 Atomic orbital electron populations 1.21472 0.97229 0.97513 1.01642 1.21592 0.95174 0.98150 1.00132 1.19238 0.92061 0.90686 0.86694 0.98776 1.21189 1.30335 1.11781 0.89542 0.91534 1.24877 0.95306 0.95097 0.98875 1.69889 1.36513 1.22593 1.24574 0.86569 0.78358 0.79876 0.83519 1.19520 1.21104 1.21387 1.61882 1.60445 1.00857 1.01964 1.22059 0.96345 0.98978 0.90114 1.21544 1.02370 0.92042 0.98152 1.22186 0.95230 0.93093 0.85682 0.93187 1.87940 1.66743 1.22559 1.52447 1.22472 0.99287 0.82823 0.96544 1.22288 1.02422 0.99309 0.94520 1.21403 1.01414 0.96867 0.92793 0.89178 1.20608 0.80887 0.80270 0.87730 1.90783 1.32036 1.64003 1.51487 1.47735 1.48902 1.21660 1.18139 1.21599 1.02756 0.96996 0.84417 1.21939 0.93896 0.97793 0.93461 1.21670 1.03391 0.90644 0.95650 0.88606 1.21959 0.94264 0.90384 0.98837 0.92243 0.93988 0.96621 0.96826 0.88889 0.93249 0.96425 0.89987 0.90429 0.91629 0.88823 0.93340 0.90269 0.90437 0.92705 0.91686 0.90358 0.89935 0.92028 0.92358 0.88172 0.97166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 9.45 37.16 0.35 -2.40 16 2 C -0.11 -2.73 4.97 -26.73 -0.13 -2.86 16 3 C 0.22 5.57 1.77 -68.87 -0.12 5.45 16 4 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 5 C -0.49 -13.66 6.67 -34.44 -0.23 -13.89 16 6 H 0.07 1.95 6.62 -52.49 -0.35 1.61 16 7 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 8 N -0.90 -25.83 11.30 55.43 0.63 -25.20 16 9 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 N -0.53 -11.51 3.71 -228.07 -0.85 -12.36 16 14 C 0.05 0.99 4.92 -3.81 -0.02 0.98 16 15 C -0.10 -1.63 5.81 -26.69 -0.16 -1.79 16 16 C 0.10 1.44 2.49 -26.65 -0.07 1.38 16 17 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 18 O -0.38 -5.31 10.49 -35.23 -0.37 -5.68 16 19 C 0.07 0.67 6.83 37.16 0.25 0.92 16 20 C -0.15 -1.55 5.06 -26.57 -0.13 -1.69 16 21 C -0.10 -1.39 1.27 -91.62 -0.12 -1.51 16 22 H 0.09 1.09 7.29 -51.93 -0.38 0.71 16 23 C 0.52 8.16 6.39 -10.99 -0.07 8.09 16 24 O -0.51 -10.49 14.17 5.56 0.08 -10.41 16 25 N -0.63 -7.77 3.27 -189.51 -0.62 -8.39 16 26 C 0.08 0.98 10.52 59.85 0.63 1.61 16 27 C 0.07 0.57 9.97 59.85 0.60 1.17 16 28 C -0.09 -1.59 1.38 -90.57 -0.13 -1.71 16 29 H 0.10 1.88 7.87 -51.93 -0.41 1.47 16 30 C 0.07 1.52 4.32 -3.85 -0.02 1.51 16 31 H 0.06 1.48 7.18 -51.93 -0.37 1.11 16 32 H 0.04 0.90 7.30 -51.93 -0.38 0.52 16 33 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.01 0.30 6.41 -51.93 -0.33 -0.04 16 35 H 0.09 2.53 5.99 -51.93 -0.31 2.21 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 37 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 1.53 5.78 -51.93 -0.30 1.23 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.08 0.60 6.04 -51.93 -0.31 0.28 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.53 8.07 -51.93 -0.42 0.11 16 47 H 0.08 1.05 7.35 -51.93 -0.38 0.67 16 48 H 0.08 0.58 4.18 -51.93 -0.22 0.36 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 51 H 0.10 2.40 4.52 -51.93 -0.23 2.17 16 52 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -32.33 379.67 -8.91 -41.24 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -9.03 Total: 1.08 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.55 Total: -3.19 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.84 Total: -45.95 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.29 Total: -16.09 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.33 -8.91 -41.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.352 kcal (2) G-P(sol) polarization free energy of solvation -32.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds