Wall clock time and date at job start Tue Mar 31 2020 15:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46946 * 2 1 4 4 H 1.08999 * 109.46951 * 183.02573 * 3 2 1 5 5 C 1.50699 * 109.47301 * 63.02695 * 3 2 1 6 6 H 1.07993 * 120.00121 * 239.99550 * 5 3 2 7 7 C 1.37878 * 119.99819 * 60.00066 * 5 3 2 8 8 N 1.31515 * 120.00086 * 359.97438 * 7 5 3 9 9 Si 1.86796 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47388 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47600 * 119.99562 * 9 7 5 12 12 H 1.48505 * 109.47424 * 239.99765 * 9 7 5 13 13 N 1.46898 * 109.47184 * 303.02807 * 3 2 1 14 14 C 1.46772 * 110.99856 * 303.50462 * 13 3 2 15 15 C 1.53163 * 109.85681 * 174.69603 * 14 13 3 16 16 C 1.52910 * 108.92424 * 58.77793 * 15 14 13 17 17 H 1.08996 * 109.29751 * 61.11682 * 16 15 14 18 18 O 1.42690 * 110.62807 * 181.67294 * 16 15 14 19 19 C 1.43057 * 113.60823 * 181.84380 * 18 16 15 20 20 C 1.53013 * 109.78197 * 299.24624 * 19 18 16 21 21 C 1.53300 * 109.50200 * 56.77309 * 20 19 18 22 22 H 1.08996 * 109.60570 * 63.17831 * 21 20 19 23 23 C 1.50701 * 109.74571 * 183.59810 * 21 20 19 24 24 O 1.21281 * 119.99827 * 103.93860 * 23 21 20 25 25 N 1.34776 * 119.99632 * 283.94085 * 23 21 20 26 26 C 1.46504 * 119.99527 * 185.49485 * 25 23 21 27 27 C 1.46499 * 120.00325 * 5.49497 * 25 23 21 28 28 C 1.52999 * 108.65969 * 303.43175 * 21 20 19 29 29 H 1.09005 * 109.49789 * 298.00661 * 28 21 20 30 30 C 1.46982 * 110.99784 * 178.81922 * 13 3 2 31 31 H 1.08997 * 109.47194 * 304.20095 * 1 2 3 32 32 H 1.08994 * 109.47212 * 64.20074 * 1 2 3 33 33 H 1.09003 * 109.46805 * 184.20197 * 1 2 3 34 34 H 1.09003 * 109.46853 * 239.99886 * 2 1 3 35 35 H 1.08995 * 109.47050 * 119.99987 * 2 1 3 36 36 H 0.96996 * 119.99789 * 180.02562 * 8 7 5 37 37 H 1.09003 * 109.40649 * 294.81462 * 14 13 3 38 38 H 1.08998 * 109.40497 * 54.57804 * 14 13 3 39 39 H 1.09000 * 109.56755 * 298.94477 * 15 14 13 40 40 H 1.09000 * 109.65850 * 178.66080 * 15 14 13 41 41 H 1.09001 * 109.41598 * 179.15843 * 19 18 16 42 42 H 1.08997 * 109.42066 * 59.34424 * 19 18 16 43 43 H 1.09007 * 109.46952 * 296.76203 * 20 19 18 44 44 H 1.09000 * 109.46385 * 176.77983 * 20 19 18 45 45 H 1.09000 * 109.47271 * 90.00246 * 26 25 23 46 46 H 1.09004 * 109.46849 * 210.00106 * 26 25 23 47 47 H 1.09000 * 109.47145 * 329.99571 * 26 25 23 48 48 H 1.08995 * 109.46969 * 5.45573 * 27 25 23 49 49 H 1.08998 * 109.47129 * 125.45808 * 27 25 23 50 50 H 1.09001 * 109.46858 * 245.46154 * 27 25 23 51 51 H 1.09000 * 109.52294 * 305.59826 * 30 13 3 52 52 H 1.09000 * 109.52758 * 65.73782 * 30 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4430 -0.0542 5 6 1.5999 2.1309 1.2662 6 1 0.9753 3.0103 1.2137 7 6 1.9947 1.6381 2.4919 8 7 2.7550 0.5669 2.5559 9 14 1.4486 2.4909 4.0615 10 1 0.6051 3.6643 3.7196 11 1 0.6647 1.5428 4.8931 12 1 2.6423 2.9442 4.8197 13 7 1.4915 2.1558 -1.1612 14 6 1.8310 1.4653 -2.4110 15 6 1.1383 2.1542 -3.5907 16 6 1.5873 3.6148 -3.6453 17 1 2.6660 3.6547 -3.7968 18 8 0.9327 4.3025 -4.7104 19 6 1.3385 5.6676 -4.8461 20 6 1.0110 6.4351 -3.5636 21 6 1.6902 5.7523 -2.3709 22 1 2.7724 5.7927 -2.4940 23 6 1.3000 6.4514 -1.0941 24 8 0.4861 5.9461 -0.3504 25 7 1.8556 7.6381 -0.7787 26 6 1.5689 8.2600 0.5164 27 6 2.7462 8.3061 -1.7309 28 6 1.2338 4.2930 -2.3172 29 1 0.1554 4.2544 -2.1631 30 6 1.9386 3.5558 -1.1786 31 1 -0.3633 0.5776 0.8499 32 1 -0.3633 0.4472 -0.9252 33 1 -0.3633 -1.0249 0.0753 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 3.0325 0.2200 3.4182 37 1 2.9107 1.4932 -2.5585 38 1 1.5013 0.4280 -2.3529 39 1 0.0576 2.1094 -3.4561 40 1 1.4115 1.6535 -4.5196 41 1 0.8102 6.1211 -5.6847 42 1 2.4121 5.7099 -5.0296 43 1 -0.0683 6.4437 -3.4109 44 1 1.3736 7.4593 -3.6506 45 1 2.3035 7.9275 1.2498 46 1 1.6190 9.3444 0.4177 47 1 0.5706 7.9709 0.8452 48 1 2.7626 7.7473 -2.6666 49 1 2.3853 9.3175 -1.9180 50 1 3.7535 8.3506 -1.3166 51 1 1.6899 4.0295 -0.2290 52 1 3.0171 3.5920 -1.3325 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255170776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:02 Heat of formation + Delta-G solvation = -93.664630 kcal Electronic energy + Delta-G solvation = -30757.203250 eV Core-core repulsion = 26948.861580 eV Total energy + Delta-G solvation = -3808.341670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.95441 -40.17832 -38.87869 -36.63887 -35.86757 -34.94987 -33.55108 -31.95856 -31.23785 -29.24509 -28.27867 -27.79965 -26.23051 -25.35802 -24.51394 -23.53907 -22.25463 -21.32004 -20.65871 -19.92569 -18.18006 -18.12220 -17.69117 -17.21172 -16.89015 -16.67978 -16.30129 -16.06875 -15.82464 -15.57665 -15.11780 -14.92628 -14.66153 -14.49367 -14.27334 -13.94693 -13.80443 -13.59234 -13.49783 -13.39461 -13.28072 -13.16613 -12.90589 -12.81006 -12.69928 -12.52566 -12.39148 -12.16270 -12.09647 -11.94747 -11.88351 -11.66064 -11.44003 -11.35346 -11.08143 -10.89379 -10.74508 -10.47537 -10.20214 -9.68399 -8.85167 -8.11250 -6.18878 1.31367 1.34351 1.48034 1.59095 2.04167 2.39626 2.79027 3.14298 3.24328 3.44045 3.62259 3.77553 3.84796 4.02581 4.12760 4.20962 4.28815 4.35356 4.39517 4.39709 4.47600 4.48646 4.51658 4.56381 4.66700 4.68224 4.70729 4.73718 4.77341 4.84515 4.87711 4.89609 4.90911 5.06055 5.06622 5.11522 5.18082 5.23779 5.27923 5.34881 5.46069 5.52835 5.53611 5.73491 5.79327 5.89723 6.29707 6.32950 6.34209 6.43728 6.81499 6.94549 7.18739 7.48090 8.94123 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.005615 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.451444 B = 4985.034472 C = 7083.541256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.106 4.106 3 C 0.226 3.774 4 H -0.042 1.042 5 C -0.497 4.497 6 H 0.041 0.959 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.942 3.058 10 H -0.283 1.283 11 H -0.275 1.275 12 H -0.277 1.277 13 N -0.537 5.537 14 C 0.054 3.946 15 C -0.098 4.098 16 C 0.106 3.894 17 H 0.065 0.935 18 O -0.390 6.390 19 C 0.059 3.941 20 C -0.138 4.138 21 C -0.098 4.098 22 H 0.113 0.887 23 C 0.506 3.494 24 O -0.575 6.575 25 N -0.625 5.625 26 C 0.082 3.918 27 C 0.063 3.937 28 C -0.084 4.084 29 H 0.060 0.940 30 C 0.082 3.918 31 H 0.029 0.971 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.064 0.936 36 H 0.261 0.739 37 H 0.020 0.980 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.095 0.905 41 H 0.122 0.878 42 H 0.074 0.926 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.046 0.954 46 H 0.106 0.894 47 H 0.049 0.951 48 H 0.095 0.905 49 H 0.091 0.909 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.967 15.810 -16.346 22.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.145 4.145 3 C 0.120 3.880 4 H -0.025 1.025 5 C -0.536 4.536 6 H 0.059 0.941 7 C -0.180 4.180 8 N -0.556 5.556 9 Si 0.769 3.231 10 H -0.208 1.208 11 H -0.201 1.201 12 H -0.203 1.203 13 N -0.261 5.261 14 C -0.074 4.074 15 C -0.135 4.135 16 C 0.048 3.952 17 H 0.083 0.917 18 O -0.309 6.309 19 C -0.017 4.017 20 C -0.176 4.176 21 C -0.120 4.120 22 H 0.131 0.869 23 C 0.295 3.705 24 O -0.454 6.454 25 N -0.359 5.359 26 C -0.061 4.061 27 C -0.078 4.078 28 C -0.104 4.104 29 H 0.078 0.922 30 C -0.047 4.047 31 H 0.048 0.952 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.039 0.961 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.140 0.860 42 H 0.092 0.908 43 H 0.078 0.922 44 H 0.134 0.866 45 H 0.065 0.935 46 H 0.125 0.875 47 H 0.068 0.932 48 H 0.114 0.886 49 H 0.109 0.891 50 H 0.088 0.912 51 H 0.076 0.924 52 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 0.994 15.363 -15.884 22.121 hybrid contribution 0.858 0.293 1.905 2.110 sum 1.852 15.656 -13.979 21.070 Atomic orbital electron populations 1.21321 0.95944 0.98553 1.00742 1.21452 0.96174 0.97121 0.99730 1.18996 0.89819 0.91737 0.87477 1.02481 1.21236 1.29951 1.11147 0.91223 0.94071 1.25477 0.95479 0.95726 1.01291 1.69986 1.37074 1.23288 1.25241 0.85743 0.78117 0.78634 0.80608 1.20789 1.20064 1.20294 1.61813 1.60374 1.01509 1.02429 1.22123 0.96879 0.98992 0.89451 1.21474 1.01232 0.92964 0.97876 1.21970 0.95962 0.92434 0.84867 0.91683 1.87922 1.67085 1.24666 1.51251 1.22832 1.01368 0.80674 0.96859 1.22294 1.01001 1.01155 0.93122 1.21419 1.02831 0.94578 0.93175 0.86940 1.21120 0.80341 0.81035 0.87977 1.90757 1.35192 1.65899 1.53558 1.47905 1.48389 1.20706 1.18903 1.21673 1.00890 0.99332 0.84213 1.22291 0.93627 0.99014 0.92885 1.21479 1.00622 0.92965 0.95346 0.92192 1.21796 0.94333 0.89827 0.98702 0.95198 0.93066 0.94168 0.94644 0.91724 0.93012 0.96143 0.90044 0.91634 0.88657 0.86020 0.90782 0.92226 0.86624 0.93509 0.87524 0.93165 0.88608 0.89089 0.91159 0.92380 0.97465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.98 9.45 71.98 0.68 -4.30 16 2 C -0.11 -5.30 4.97 30.59 0.15 -5.15 16 3 C 0.23 12.07 1.77 44.17 0.08 12.15 16 4 H -0.04 -2.51 8.14 -2.39 -0.02 -2.53 16 5 C -0.50 -29.32 6.67 25.60 0.17 -29.15 16 6 H 0.04 2.61 6.62 -2.91 -0.02 2.59 16 7 C 0.02 1.09 5.30 84.65 0.45 1.54 16 8 N -0.92 -54.37 11.30 21.45 0.24 -54.13 16 9 Si 0.94 47.32 29.54 68.60 2.03 49.35 16 10 H -0.28 -14.63 7.11 99.48 0.71 -13.93 16 11 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 12 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 13 N -0.54 -24.42 3.71 -875.48 -3.25 -27.67 16 14 C 0.05 1.97 4.92 86.38 0.43 2.40 16 15 C -0.10 -2.95 5.81 30.62 0.18 -2.77 16 16 C 0.11 3.00 2.49 30.65 0.08 3.08 16 17 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 18 O -0.39 -9.80 10.49 -148.98 -1.56 -11.36 16 19 C 0.06 0.94 6.83 71.99 0.49 1.44 16 20 C -0.14 -2.50 5.06 30.70 0.16 -2.34 16 21 C -0.10 -2.56 1.27 -11.44 -0.01 -2.57 16 22 H 0.11 2.42 7.29 -2.39 -0.02 2.40 16 23 C 0.51 16.31 6.39 87.66 0.56 16.87 16 24 O -0.58 -25.57 14.17 -3.03 -0.04 -25.61 16 25 N -0.63 -14.82 3.27 -871.89 -2.85 -17.67 16 26 C 0.08 1.87 10.52 127.77 1.34 3.21 16 27 C 0.06 0.76 9.97 127.77 1.27 2.04 16 28 C -0.08 -2.89 1.38 -10.76 -0.01 -2.91 16 29 H 0.06 2.49 7.87 -2.38 -0.02 2.47 16 30 C 0.08 3.54 4.32 86.24 0.37 3.92 16 31 H 0.03 1.52 7.18 -2.39 -0.02 1.50 16 32 H 0.05 2.22 7.30 -2.39 -0.02 2.20 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.04 1.58 6.41 -2.39 -0.02 1.56 16 35 H 0.06 3.61 5.99 -2.39 -0.01 3.59 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 2.97 5.78 -2.39 -0.01 2.96 16 39 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 41 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.12 1.22 6.04 -2.39 -0.01 1.21 16 45 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 46 H 0.11 1.51 8.07 -2.38 -0.02 1.49 16 47 H 0.05 1.43 7.35 -2.39 -0.02 1.42 16 48 H 0.10 0.90 4.18 -2.39 -0.01 0.89 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.06 3.02 4.52 -2.39 -0.01 3.01 16 52 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -77.31 379.67 1.83 -75.48 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.89 Total: 14.17 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: 6.38 Total: -2.56 kcal Atomic # 7 Polarization: -93.60 SS G_CDS: -5.86 Total: -99.47 kcal Atomic # 8 Polarization: -35.37 SS G_CDS: -1.61 Total: -36.97 kcal Atomic # 14 Polarization: 47.32 SS G_CDS: 2.03 Total: 49.35 kcal Total: -77.31 1.83 -75.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255170776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.184 kcal (2) G-P(sol) polarization free energy of solvation -77.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds