Wall clock time and date at job start Tue Mar 31 2020 15:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47349 * 2 1 4 4 H 1.08998 * 109.46835 * 57.55792 * 3 2 1 5 5 C 1.50695 * 109.47111 * 177.55606 * 3 2 1 6 6 H 1.08007 * 119.99844 * 119.99912 * 5 3 2 7 7 C 1.37872 * 120.00251 * 299.99963 * 5 3 2 8 8 N 1.31515 * 120.00271 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00015 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47200 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47280 * 120.00150 * 9 7 5 12 12 H 1.48499 * 109.47408 * 239.99967 * 9 7 5 13 13 N 1.46896 * 109.46925 * 297.55827 * 3 2 1 14 14 C 1.46823 * 111.00085 * 298.66790 * 13 3 2 15 15 C 1.53209 * 109.85075 * 169.78168 * 14 13 3 16 16 N 1.47425 * 108.35102 * 56.92246 * 15 14 13 17 17 C 1.34776 * 121.46384 * 132.22353 * 16 15 14 18 18 O 1.21504 * 120.00528 * 175.48273 * 17 16 15 19 19 O 1.34643 * 119.99747 * 355.47993 * 17 16 15 20 20 C 1.45204 * 116.99818 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.46945 * 60.00381 * 20 19 17 22 22 C 1.53007 * 109.46758 * 180.02562 * 20 19 17 23 23 C 1.52995 * 109.47117 * 300.00358 * 20 19 17 24 24 C 1.47097 * 117.07628 * 312.49949 * 16 15 14 25 25 C 1.52581 * 117.89525 * 259.03953 * 24 16 15 26 26 C 1.52547 * 117.97117 * 189.84400 * 24 16 15 27 27 C 1.47164 * 111.00112 * 174.31651 * 13 3 2 28 28 H 1.08999 * 109.46967 * 55.17569 * 1 2 3 29 29 H 1.08996 * 109.47164 * 175.17652 * 1 2 3 30 30 H 1.08997 * 109.47200 * 295.18122 * 1 2 3 31 31 H 1.08995 * 109.47019 * 239.99326 * 2 1 3 32 32 H 1.09009 * 109.46800 * 119.99955 * 2 1 3 33 33 H 0.96994 * 120.00461 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.41184 * 49.66102 * 14 13 3 35 35 H 1.09007 * 109.40534 * 289.89481 * 14 13 3 36 36 H 1.08994 * 109.68475 * 297.20702 * 15 14 13 37 37 H 1.09000 * 109.71653 * 176.66073 * 15 14 13 38 38 H 1.09004 * 109.47349 * 59.99621 * 21 20 19 39 39 H 1.08997 * 109.47290 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47207 * 299.99983 * 21 20 19 41 41 H 1.08998 * 109.47007 * 60.00334 * 22 20 19 42 42 H 1.08997 * 109.46713 * 180.02562 * 22 20 19 43 43 H 1.08995 * 109.47048 * 300.00330 * 22 20 19 44 44 H 1.08999 * 109.47218 * 60.00475 * 23 20 19 45 45 H 1.09004 * 109.46777 * 180.02562 * 23 20 19 46 46 H 1.09001 * 109.47323 * 299.99523 * 23 20 19 47 47 H 1.09003 * 117.51392 * 359.48358 * 25 24 16 48 48 H 1.09002 * 117.51163 * 144.57181 * 25 24 16 49 49 H 1.09002 * 117.50800 * 215.30627 * 26 24 16 50 50 H 1.09000 * 117.50922 * 0.34639 * 26 24 16 51 51 H 1.09006 * 109.61952 * 302.93624 * 27 13 3 52 52 H 1.08998 * 109.61895 * 63.47282 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6414 1.9688 0.8673 5 6 3.5458 1.4429 0.0606 6 1 4.1181 1.8991 -0.7337 7 6 4.1929 0.8608 1.1299 8 7 3.4961 0.3048 2.0968 9 14 6.0594 0.8607 1.2045 10 1 6.6030 1.5425 0.0025 11 1 6.5060 1.5781 2.4256 12 1 6.5532 -0.5393 1.2446 13 7 1.5992 2.1177 -1.2278 14 6 2.1442 1.4534 -2.4184 15 6 1.4737 2.0110 -3.6781 16 7 1.6801 3.4705 -3.7064 17 6 2.1103 4.0986 -4.8186 18 8 2.1930 5.3107 -4.8383 19 8 2.4484 3.3830 -5.9078 20 6 2.9026 4.1259 -7.0697 21 6 4.1505 4.9320 -6.7038 22 6 3.2382 3.1503 -8.1996 23 6 1.7972 5.0782 -7.5303 24 6 1.4019 4.2102 -2.4658 25 6 0.0762 4.9586 -2.3629 26 6 1.3852 5.7343 -2.5300 27 6 1.9556 3.5453 -1.2018 28 1 -0.3633 0.5869 -0.8436 29 1 -0.3633 -1.0240 -0.0864 30 1 -0.3633 0.4372 0.9300 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.9513 -0.1044 2.8492 34 1 1.9572 0.3816 -2.3527 35 1 3.2186 1.6299 -2.4716 36 1 0.4064 1.7914 -3.6536 37 1 1.9213 1.5594 -4.5634 38 1 4.9380 4.2535 -6.3756 39 1 4.4918 5.4893 -7.5761 40 1 3.9111 5.6269 -5.8990 41 1 2.3489 2.5764 -8.4601 42 1 3.5796 3.7079 -9.0717 43 1 4.0255 2.4715 -7.8717 44 1 1.5578 5.7732 -6.7255 45 1 2.1381 5.6355 -8.4028 46 1 0.9082 4.5039 -7.7910 47 1 -0.5953 4.9135 -3.2203 48 1 -0.4082 4.9927 -1.3870 49 1 1.7618 6.2788 -1.6641 50 1 1.5753 6.1996 -3.4972 51 1 1.5197 4.0153 -0.3201 52 1 3.0402 3.6513 -1.1776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255172801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:24 Heat of formation + Delta-G solvation = -33.613318 kcal Electronic energy + Delta-G solvation = -30316.252010 eV Core-core repulsion = 26510.514360 eV Total energy + Delta-G solvation = -3805.737649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88129 -39.06141 -37.04884 -35.72149 -34.75703 -33.47997 -32.42530 -31.17235 -28.70115 -27.51182 -27.44417 -26.98639 -24.96045 -23.09954 -22.89641 -22.20126 -21.78416 -19.98315 -19.09603 -18.64944 -17.31988 -16.47672 -16.28073 -15.91885 -15.62832 -15.14004 -14.67115 -14.53824 -14.32465 -13.96979 -13.74713 -13.59570 -13.30040 -13.00186 -12.71281 -12.58680 -12.37612 -12.11526 -12.00722 -11.97114 -11.91487 -11.73543 -11.52545 -11.41210 -11.24464 -11.04998 -11.00848 -10.92376 -10.79371 -10.52347 -10.37204 -10.22112 -10.14575 -9.87158 -9.68468 -9.39307 -9.17968 -9.10449 -8.41142 -8.35620 -7.20173 -6.03868 -4.17374 2.22559 2.97552 3.22736 3.31987 3.35543 3.86427 4.18727 4.36068 4.63767 4.68301 4.82222 4.84156 5.10678 5.19538 5.22240 5.32703 5.34745 5.42973 5.44303 5.55356 5.57598 5.66765 5.73048 5.77882 5.85153 5.86742 5.92757 6.00244 6.14986 6.19422 6.21799 6.29022 6.31374 6.40831 6.43874 6.47028 6.55646 6.64286 6.68847 6.70159 7.01248 7.07287 7.14431 7.26600 7.54089 7.65202 7.71266 7.90904 8.08520 8.21789 8.38374 8.53980 8.92001 9.50899 10.95402 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003961 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.740421 B = 7066.931720 C = 7662.492944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.111 4.111 3 C 0.214 3.786 4 H 0.041 0.959 5 C -0.545 4.545 6 H 0.055 0.945 7 C 0.071 3.929 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.284 1.284 13 N -0.529 5.529 14 C 0.046 3.954 15 C 0.117 3.883 16 N -0.559 5.559 17 C 0.658 3.342 18 O -0.570 6.570 19 O -0.364 6.364 20 C 0.136 3.864 21 C -0.183 4.183 22 C -0.140 4.140 23 C -0.182 4.182 24 C 0.120 3.880 25 C -0.176 4.176 26 C -0.189 4.189 27 C 0.100 3.900 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.038 0.962 31 H 0.034 0.966 32 H 0.092 0.908 33 H 0.261 0.739 34 H 0.088 0.912 35 H 0.041 0.959 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.088 0.912 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.090 0.910 50 H 0.148 0.852 51 H 0.081 0.919 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.112 5.919 -15.829 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.150 4.150 3 C 0.108 3.892 4 H 0.059 0.941 5 C -0.584 4.584 6 H 0.074 0.926 7 C -0.132 4.132 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.210 1.210 13 N -0.253 5.253 14 C -0.083 4.083 15 C -0.005 4.005 16 N -0.296 5.296 17 C 0.414 3.586 18 O -0.462 6.462 19 O -0.279 6.279 20 C 0.099 3.901 21 C -0.240 4.240 22 C -0.198 4.198 23 C -0.239 4.239 24 C 0.035 3.965 25 C -0.215 4.215 26 C -0.226 4.226 27 C -0.030 4.030 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.111 0.889 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.059 0.941 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.107 0.893 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.105 0.895 48 H 0.117 0.883 49 H 0.109 0.891 50 H 0.165 0.835 51 H 0.099 0.901 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.539 6.115 -15.771 17.513 hybrid contribution 2.003 -0.104 0.184 2.014 sum -2.536 6.011 -15.587 16.897 Atomic orbital electron populations 1.21729 0.98737 0.98550 1.00724 1.21628 0.92279 0.98991 1.02063 1.19293 0.92724 0.91085 0.86089 0.94131 1.21747 0.92617 1.37545 1.06471 0.92640 1.24879 0.97900 0.94936 0.95485 1.69873 1.34920 1.37541 1.09863 0.86647 0.86297 0.77746 0.77970 1.20002 1.20978 1.20970 1.62485 1.58357 1.00669 1.03790 1.22256 0.97225 0.99480 0.89326 1.22057 1.01236 0.77743 0.99436 1.46439 1.66479 1.08683 1.08009 1.18040 0.76623 0.83573 0.80404 1.90593 1.60204 1.12528 1.82852 1.86320 1.78673 1.40962 1.21916 1.21993 0.94245 0.91539 0.82288 1.22510 0.96533 1.01288 1.03681 1.21850 1.02661 0.99212 0.96031 1.22503 0.98022 1.00315 1.03033 1.20881 1.01003 0.90939 0.83717 1.23249 0.91201 1.04264 1.02789 1.24189 0.99642 0.92343 1.06443 1.21700 0.98656 0.90169 0.92441 0.93040 0.95602 0.94282 0.94763 0.88933 0.92898 0.89426 0.94100 0.91078 0.89811 0.92217 0.91480 0.89231 0.91567 0.90387 0.91463 0.89312 0.91453 0.92375 0.89503 0.88277 0.89128 0.83483 0.90076 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.84 37.16 0.37 -2.32 16 2 C -0.11 -2.48 5.01 -26.73 -0.13 -2.62 16 3 C 0.21 4.97 1.77 -68.87 -0.12 4.85 16 4 H 0.04 1.06 8.11 -51.93 -0.42 0.63 16 5 C -0.54 -13.98 7.20 -34.44 -0.25 -14.23 16 6 H 0.06 1.47 5.89 -52.48 -0.31 1.16 16 7 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 8 N -0.88 -24.05 11.30 55.43 0.63 -23.43 16 9 Si 0.89 20.79 29.54 -169.99 -5.02 15.76 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.53 -10.47 3.88 -227.62 -0.88 -11.35 16 14 C 0.05 0.85 4.85 -3.76 -0.02 0.84 16 15 C 0.12 1.84 6.65 -3.43 -0.02 1.82 16 16 N -0.56 -9.26 3.07 -163.64 -0.50 -9.76 16 17 C 0.66 10.72 7.75 54.06 0.42 11.14 16 18 O -0.57 -9.56 8.42 -19.27 -0.16 -9.73 16 19 O -0.36 -5.31 8.65 -40.33 -0.35 -5.66 16 20 C 0.14 1.59 1.13 -90.62 -0.10 1.49 16 21 C -0.18 -2.14 8.37 37.16 0.31 -1.83 16 22 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 23 C -0.18 -1.97 8.37 37.16 0.31 -1.66 16 24 C 0.12 2.01 2.63 -131.84 -0.35 1.66 16 25 C -0.18 -2.61 10.16 -26.91 -0.27 -2.89 16 26 C -0.19 -2.91 9.33 -26.93 -0.25 -3.16 16 27 C 0.10 1.90 5.05 -3.58 -0.02 1.88 16 28 H 0.05 0.95 7.54 -51.93 -0.39 0.56 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.03 0.75 6.10 -51.93 -0.32 0.43 16 32 H 0.09 2.34 6.01 -51.92 -0.31 2.03 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.09 1.61 5.81 -51.93 -0.30 1.31 16 35 H 0.04 0.85 6.75 -51.92 -0.35 0.50 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.20 7.08 -51.93 -0.37 0.83 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.09 1.26 5.88 -51.93 -0.31 0.95 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.09 1.16 5.88 -51.93 -0.31 0.86 16 45 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 47 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 48 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 49 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.15 2.42 4.83 -53.37 -0.26 2.17 16 51 H 0.08 1.51 8.04 -51.93 -0.42 1.10 16 52 H 0.05 1.03 6.95 -51.93 -0.36 0.67 16 LS Contribution 387.47 15.07 5.84 5.84 Total: -1.00 -27.10 387.47 -9.39 -36.50 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -9.05 Total: 6.01 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 0.10 Total: -4.18 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.76 Total: -44.54 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.51 Total: -15.39 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -27.10 -9.39 -36.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.882 kcal (2) G-P(sol) polarization free energy of solvation -27.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds