Wall clock time and date at job start Tue Mar 31 2020 15:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.47349 * 2 1 4 4 H 1.08998 * 109.46835 * 57.55792 * 3 2 1 5 5 C 1.50695 * 109.47111 * 177.55606 * 3 2 1 6 6 H 1.08007 * 119.99844 * 119.99912 * 5 3 2 7 7 C 1.37872 * 120.00251 * 299.99963 * 5 3 2 8 8 N 1.31515 * 120.00271 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00015 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47200 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47280 * 120.00150 * 9 7 5 12 12 H 1.48499 * 109.47408 * 239.99967 * 9 7 5 13 13 N 1.46896 * 109.46925 * 297.55827 * 3 2 1 14 14 C 1.46823 * 111.00085 * 298.66790 * 13 3 2 15 15 C 1.53209 * 109.85075 * 169.78168 * 14 13 3 16 16 N 1.47425 * 108.35102 * 56.92246 * 15 14 13 17 17 C 1.34776 * 121.46384 * 132.22353 * 16 15 14 18 18 O 1.21504 * 120.00528 * 175.48273 * 17 16 15 19 19 O 1.34643 * 119.99747 * 355.47993 * 17 16 15 20 20 C 1.45204 * 116.99818 * 179.97438 * 19 17 16 21 21 C 1.52999 * 109.46945 * 60.00381 * 20 19 17 22 22 C 1.53007 * 109.46758 * 180.02562 * 20 19 17 23 23 C 1.52995 * 109.47117 * 300.00358 * 20 19 17 24 24 C 1.47097 * 117.07628 * 312.49949 * 16 15 14 25 25 C 1.52581 * 117.89525 * 259.03953 * 24 16 15 26 26 C 1.52547 * 117.97117 * 189.84400 * 24 16 15 27 27 C 1.47164 * 111.00112 * 174.31651 * 13 3 2 28 28 H 1.08999 * 109.46967 * 55.17569 * 1 2 3 29 29 H 1.08996 * 109.47164 * 175.17652 * 1 2 3 30 30 H 1.08997 * 109.47200 * 295.18122 * 1 2 3 31 31 H 1.08995 * 109.47019 * 239.99326 * 2 1 3 32 32 H 1.09009 * 109.46800 * 119.99955 * 2 1 3 33 33 H 0.96994 * 120.00461 * 180.02562 * 8 7 5 34 34 H 1.09002 * 109.41184 * 49.66102 * 14 13 3 35 35 H 1.09007 * 109.40534 * 289.89481 * 14 13 3 36 36 H 1.08994 * 109.68475 * 297.20702 * 15 14 13 37 37 H 1.09000 * 109.71653 * 176.66073 * 15 14 13 38 38 H 1.09004 * 109.47349 * 59.99621 * 21 20 19 39 39 H 1.08997 * 109.47290 * 179.97438 * 21 20 19 40 40 H 1.08994 * 109.47207 * 299.99983 * 21 20 19 41 41 H 1.08998 * 109.47007 * 60.00334 * 22 20 19 42 42 H 1.08997 * 109.46713 * 180.02562 * 22 20 19 43 43 H 1.08995 * 109.47048 * 300.00330 * 22 20 19 44 44 H 1.08999 * 109.47218 * 60.00475 * 23 20 19 45 45 H 1.09004 * 109.46777 * 180.02562 * 23 20 19 46 46 H 1.09001 * 109.47323 * 299.99523 * 23 20 19 47 47 H 1.09003 * 117.51392 * 359.48358 * 25 24 16 48 48 H 1.09002 * 117.51163 * 144.57181 * 25 24 16 49 49 H 1.09002 * 117.50800 * 215.30627 * 26 24 16 50 50 H 1.09000 * 117.50922 * 0.34639 * 26 24 16 51 51 H 1.09006 * 109.61952 * 302.93624 * 27 13 3 52 52 H 1.08998 * 109.61895 * 63.47282 * 27 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6414 1.9688 0.8673 5 6 3.5458 1.4429 0.0606 6 1 4.1181 1.8991 -0.7337 7 6 4.1929 0.8608 1.1299 8 7 3.4961 0.3048 2.0968 9 14 6.0594 0.8607 1.2045 10 1 6.6030 1.5425 0.0025 11 1 6.5060 1.5781 2.4256 12 1 6.5532 -0.5393 1.2446 13 7 1.5992 2.1177 -1.2278 14 6 2.1442 1.4534 -2.4184 15 6 1.4737 2.0110 -3.6781 16 7 1.6801 3.4705 -3.7064 17 6 2.1103 4.0986 -4.8186 18 8 2.1930 5.3107 -4.8383 19 8 2.4484 3.3830 -5.9078 20 6 2.9026 4.1259 -7.0697 21 6 4.1505 4.9320 -6.7038 22 6 3.2382 3.1503 -8.1996 23 6 1.7972 5.0782 -7.5303 24 6 1.4019 4.2102 -2.4658 25 6 0.0762 4.9586 -2.3629 26 6 1.3852 5.7343 -2.5300 27 6 1.9556 3.5453 -1.2018 28 1 -0.3633 0.5869 -0.8436 29 1 -0.3633 -1.0240 -0.0864 30 1 -0.3633 0.4372 0.9300 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8901 33 1 3.9513 -0.1044 2.8492 34 1 1.9572 0.3816 -2.3527 35 1 3.2186 1.6299 -2.4716 36 1 0.4064 1.7914 -3.6536 37 1 1.9213 1.5594 -4.5634 38 1 4.9380 4.2535 -6.3756 39 1 4.4918 5.4893 -7.5761 40 1 3.9111 5.6269 -5.8990 41 1 2.3489 2.5764 -8.4601 42 1 3.5796 3.7079 -9.0717 43 1 4.0255 2.4715 -7.8717 44 1 1.5578 5.7732 -6.7255 45 1 2.1381 5.6355 -8.4028 46 1 0.9082 4.5039 -7.7910 47 1 -0.5953 4.9135 -3.2203 48 1 -0.4082 4.9927 -1.3870 49 1 1.7618 6.2788 -1.6641 50 1 1.5753 6.1996 -3.4972 51 1 1.5197 4.0153 -0.3201 52 1 3.0402 3.6513 -1.1776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255172801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:23 Heat of formation + Delta-G solvation = -47.709391 kcal Electronic energy + Delta-G solvation = -30316.863262 eV Core-core repulsion = 26510.514360 eV Total energy + Delta-G solvation = -3806.348901 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.08680 -40.37096 -38.49020 -37.04121 -36.00704 -34.76576 -34.10908 -32.89394 -30.14292 -28.75513 -28.33248 -28.26859 -26.64585 -24.58731 -24.29254 -23.57440 -23.17330 -21.08334 -20.84156 -19.97103 -18.74151 -18.02684 -17.52957 -17.16958 -17.07439 -16.76173 -16.04926 -15.93796 -15.49443 -15.37466 -15.27159 -14.75554 -14.65951 -14.50652 -14.16557 -13.65444 -13.52179 -13.48028 -13.30503 -13.12219 -13.06385 -12.95730 -12.83405 -12.80872 -12.76821 -12.53370 -12.43813 -12.34785 -12.25022 -11.99575 -11.82205 -11.64493 -11.58176 -11.41105 -11.33912 -11.01099 -10.85362 -10.43478 -10.40940 -9.67973 -8.94453 -8.04687 -6.26228 1.06821 1.32799 1.37310 1.45448 1.73767 2.38230 2.69846 2.92228 3.13986 3.33262 3.75265 3.77931 3.83348 3.92237 3.98169 4.04968 4.10189 4.29603 4.48683 4.53540 4.59355 4.63058 4.64452 4.69393 4.73864 4.78967 4.80406 4.83091 4.86665 4.89904 4.90499 4.95742 4.99470 5.02312 5.15521 5.16205 5.27346 5.29597 5.31623 5.36039 5.47860 5.49710 5.53361 5.63048 5.74926 5.81647 6.05001 6.16888 6.33195 6.46176 6.58300 6.93590 7.31302 7.44537 8.90295 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014019 B = 0.003961 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1996.740421 B = 7066.931720 C = 7662.492944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.105 4.105 3 C 0.221 3.779 4 H 0.009 0.991 5 C -0.550 4.550 6 H 0.041 0.959 7 C 0.029 3.971 8 N -0.906 5.906 9 Si 0.939 3.061 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.278 1.278 13 N -0.519 5.519 14 C 0.052 3.948 15 C 0.128 3.872 16 N -0.566 5.566 17 C 0.654 3.346 18 O -0.578 6.578 19 O -0.369 6.369 20 C 0.124 3.876 21 C -0.180 4.180 22 C -0.135 4.135 23 C -0.176 4.176 24 C 0.102 3.898 25 C -0.154 4.154 26 C -0.183 4.183 27 C 0.105 3.895 28 H 0.061 0.939 29 H 0.046 0.954 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.062 0.938 33 H 0.262 0.738 34 H 0.089 0.911 35 H 0.011 0.989 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.104 0.896 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.098 0.902 50 H 0.141 0.859 51 H 0.080 0.920 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.819 6.019 -18.036 19.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.114 3.886 4 H 0.027 0.973 5 C -0.589 4.589 6 H 0.059 0.941 7 C -0.172 4.172 8 N -0.545 5.545 9 Si 0.766 3.234 10 H -0.205 1.205 11 H -0.207 1.207 12 H -0.204 1.204 13 N -0.242 5.242 14 C -0.077 4.077 15 C 0.006 3.994 16 N -0.303 5.303 17 C 0.410 3.590 18 O -0.470 6.470 19 O -0.284 6.284 20 C 0.088 3.912 21 C -0.237 4.237 22 C -0.192 4.192 23 C -0.233 4.233 24 C 0.017 3.983 25 C -0.193 4.193 26 C -0.221 4.221 27 C -0.024 4.024 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.030 0.970 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.122 0.878 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.081 0.919 47 H 0.113 0.887 48 H 0.128 0.872 49 H 0.116 0.884 50 H 0.158 0.842 51 H 0.099 0.901 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -5.246 6.218 -18.000 19.753 hybrid contribution 2.269 -0.083 0.824 2.416 sum -2.977 6.135 -17.176 18.480 Atomic orbital electron populations 1.21584 0.96016 1.00045 1.00796 1.21457 0.94626 0.97686 1.00580 1.19065 0.91218 0.91736 0.86585 0.97278 1.21929 0.94089 1.36938 1.05934 0.94051 1.25478 1.01291 0.94975 0.95431 1.69979 1.36096 1.38177 1.10234 0.85813 0.82271 0.77760 0.77573 1.20457 1.20714 1.20385 1.62445 1.57770 1.00974 1.03037 1.22240 0.95747 0.99681 0.90068 1.21994 1.01814 0.77418 0.98195 1.46473 1.66837 1.08905 1.08124 1.18122 0.76473 0.83590 0.80771 1.90601 1.60339 1.12915 1.83160 1.86326 1.78468 1.41472 1.22166 1.22421 0.94319 0.92503 0.81978 1.22471 0.96507 1.00812 1.03891 1.21880 1.02870 0.98881 0.95579 1.22441 0.97996 0.99814 1.03028 1.20724 1.03043 0.91567 0.82966 1.23266 0.90420 1.01907 1.03665 1.24145 1.00237 0.91292 1.06387 1.21594 0.96797 0.89925 0.94094 0.92012 0.93521 0.94920 0.94557 0.91999 0.92877 0.89283 0.97024 0.89573 0.88198 0.92964 0.88819 0.91933 0.90993 0.87764 0.91798 0.91790 0.88993 0.91945 0.88737 0.87156 0.88400 0.84224 0.90129 0.96601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.72 9.84 71.98 0.71 -4.01 16 2 C -0.11 -4.72 5.01 30.60 0.15 -4.57 16 3 C 0.22 10.52 1.77 44.17 0.08 10.60 16 4 H 0.01 0.50 8.11 -2.39 -0.02 0.48 16 5 C -0.55 -29.09 7.20 25.60 0.18 -28.90 16 6 H 0.04 2.27 5.89 -2.91 -0.02 2.26 16 7 C 0.03 1.54 5.30 84.65 0.45 1.99 16 8 N -0.91 -50.34 11.30 21.45 0.24 -50.10 16 9 Si 0.94 43.44 29.54 68.60 2.03 45.46 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.52 -20.72 3.88 -874.07 -3.39 -24.11 16 14 C 0.05 1.91 4.85 86.39 0.42 2.33 16 15 C 0.13 3.84 6.65 86.27 0.57 4.41 16 16 N -0.57 -18.34 3.07 -902.05 -2.77 -21.11 16 17 C 0.65 20.87 7.75 129.79 1.01 21.88 16 18 O -0.58 -19.23 8.42 19.83 0.17 -19.06 16 19 O -0.37 -10.33 8.65 -55.52 -0.48 -10.81 16 20 C 0.12 2.66 1.13 -10.79 -0.01 2.65 16 21 C -0.18 -3.99 8.37 71.98 0.60 -3.38 16 22 C -0.14 -2.02 8.85 71.98 0.64 -1.39 16 23 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 24 C 0.10 3.39 2.63 3.26 0.01 3.40 16 25 C -0.15 -4.31 10.16 30.48 0.31 -4.00 16 26 C -0.18 -5.52 9.33 30.47 0.28 -5.24 16 27 C 0.11 4.09 5.05 86.32 0.44 4.52 16 28 H 0.06 2.16 7.54 -2.39 -0.02 2.14 16 29 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.04 1.58 6.10 -2.39 -0.01 1.57 16 32 H 0.06 3.19 6.01 -2.38 -0.01 3.18 16 33 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.09 3.24 5.81 -2.39 -0.01 3.23 16 35 H 0.01 0.49 6.75 -2.38 -0.02 0.48 16 36 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 37 H 0.10 2.69 7.08 -2.39 -0.02 2.67 16 38 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.74 5.88 -2.39 -0.01 1.73 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 45 H 0.09 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 49 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 50 H 0.14 4.54 4.83 -25.18 -0.12 4.41 16 51 H 0.08 3.08 8.04 -2.38 -0.02 3.06 16 52 H 0.02 0.71 6.95 -2.39 -0.02 0.69 16 Total: -1.00 -59.70 387.47 3.02 -56.68 By element: Atomic # 1 Polarization: 24.82 SS G_CDS: 0.78 Total: 25.60 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 6.44 Total: -2.55 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -5.92 Total: -95.32 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.31 Total: -29.87 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -59.70 3.02 -56.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255172801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.972 kcal (2) G-P(sol) polarization free energy of solvation -59.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds