Wall clock time and date at job start Tue Mar 31 2020 15:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 H 1.08998 * 109.47058 * 58.64366 * 3 2 1 5 5 C 1.50700 * 109.47277 * 178.64842 * 3 2 1 6 6 H 1.07996 * 120.00407 * 114.70687 * 5 3 2 7 7 C 1.37879 * 119.99907 * 294.70262 * 5 3 2 8 8 N 1.31519 * 119.99962 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00343 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46908 * 59.99751 * 9 7 5 11 11 H 1.48489 * 109.47200 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46624 * 300.00084 * 9 7 5 13 13 N 1.46902 * 109.47228 * 298.64952 * 3 2 1 14 14 C 1.46907 * 110.99767 * 286.84917 * 13 3 2 15 15 C 1.52998 * 117.49654 * 143.67711 * 14 13 3 16 16 C 1.53001 * 117.49839 * 75.05516 * 14 13 3 17 17 C 1.46901 * 111.00125 * 162.89821 * 13 3 2 18 18 C 1.53947 * 113.74014 * 23.82346 * 17 13 3 19 19 N 1.47822 * 86.03394 * 222.08536 * 18 17 13 20 20 C 1.34771 * 134.45522 * 204.64881 * 19 18 17 21 21 O 1.21518 * 119.99667 * 179.86619 * 20 19 18 22 22 O 1.34631 * 120.00289 * 359.85921 * 20 19 18 23 23 C 1.45204 * 117.00253 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.46990 * 60.00064 * 23 22 20 25 25 C 1.52993 * 109.47030 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47064 * 300.00387 * 23 22 20 27 27 C 1.47584 * 91.04766 * 24.54627 * 19 18 17 28 28 H 1.08996 * 109.47138 * 55.36077 * 1 2 3 29 29 H 1.08995 * 109.46839 * 295.35229 * 1 2 3 30 30 H 1.09009 * 109.46688 * 175.35840 * 1 2 3 31 31 H 1.08997 * 109.47704 * 120.00113 * 2 1 3 32 32 H 1.09006 * 109.47058 * 240.00465 * 2 1 3 33 33 H 0.96996 * 120.00224 * 179.97438 * 8 7 5 34 34 H 1.09003 * 115.54958 * 289.39106 * 14 13 3 35 35 H 1.08992 * 117.49906 * 0.02562 * 15 14 13 36 36 H 1.09007 * 117.49645 * 145.02287 * 15 14 13 37 37 H 1.08999 * 117.49909 * 214.98162 * 16 14 13 38 38 H 1.09001 * 117.49686 * 0.02562 * 16 14 13 39 39 H 1.08996 * 112.94362 * 155.41113 * 17 13 3 40 40 H 1.09000 * 113.77051 * 336.34375 * 18 17 13 41 41 H 1.08994 * 113.76915 * 107.75038 * 18 17 13 42 42 H 1.09007 * 109.47225 * 60.00264 * 24 23 22 43 43 H 1.09001 * 109.47220 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.47373 * 300.00223 * 24 23 22 45 45 H 1.09000 * 109.47266 * 60.00685 * 25 23 22 46 46 H 1.09002 * 109.46995 * 179.97438 * 25 23 22 47 47 H 1.08999 * 109.47571 * 300.00114 * 25 23 22 48 48 H 1.08994 * 109.47433 * 59.99564 * 26 23 22 49 49 H 1.09001 * 109.46947 * 179.97438 * 26 23 22 50 50 H 1.09004 * 109.47071 * 299.99797 * 26 23 22 51 51 H 1.09000 * 113.76944 * 221.15162 * 27 19 18 52 52 H 1.08999 * 113.86728 * 89.77395 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6569 1.9633 0.8776 5 6 3.5466 1.4427 0.0335 6 1 4.1054 1.8270 -0.8069 7 6 4.2117 0.9523 1.1373 8 7 3.5312 0.4839 2.1606 9 14 6.0792 0.9532 1.1792 10 1 6.5765 2.3465 1.0504 11 1 6.5457 0.3775 2.4661 12 1 6.5999 0.1357 0.0541 13 7 1.5771 2.1255 -1.2154 14 6 2.3125 1.6541 -2.3966 15 6 1.5365 1.5320 -3.7095 16 6 1.9535 0.2726 -2.9473 17 6 1.6870 3.5836 -1.0742 18 6 2.7334 4.0287 -0.0364 19 7 1.7337 5.0305 0.3902 20 6 1.8003 6.2269 1.0070 21 8 0.7824 6.8500 1.2359 22 8 2.9945 6.7318 1.3699 23 6 2.9904 8.0248 2.0305 24 6 2.1727 7.9358 3.3205 25 6 4.4271 8.4317 2.3638 26 6 2.3672 9.0696 1.1027 27 6 0.6344 4.1961 -0.1326 28 1 -0.3633 0.5841 -0.8455 29 1 -0.3633 0.4400 0.9287 30 1 -0.3633 -1.0244 -0.0832 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.9990 0.1386 2.9370 34 1 3.3560 1.9637 -2.4552 35 1 0.4806 1.8017 -3.6970 36 1 2.0694 1.7614 -4.6323 37 1 2.7608 -0.3266 -3.3686 38 1 1.1715 -0.2864 -2.4335 39 1 1.7720 4.0980 -2.0314 40 1 2.9501 3.2746 0.7202 41 1 3.6315 4.4622 -0.4762 42 1 2.6167 7.1915 3.9816 43 1 2.1700 8.9064 3.8167 44 1 1.1491 7.6461 3.0827 45 1 5.0093 8.4953 1.4445 46 1 4.4241 9.4026 2.8593 47 1 4.8716 7.6875 3.0246 48 1 1.3437 8.7799 0.8648 49 1 2.3637 10.0401 1.5988 50 1 2.9497 9.1330 0.1835 51 1 -0.1401 4.7631 -0.6491 52 1 0.2318 3.4909 0.5944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255174676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:51 Heat of formation + Delta-G solvation = -2.469308 kcal Electronic energy + Delta-G solvation = -30139.019045 eV Core-core repulsion = 26334.631901 eV Total energy + Delta-G solvation = -3804.387144 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50343 -39.42908 -37.25441 -36.00884 -34.28877 -33.78862 -31.97486 -31.14947 -27.98550 -27.35285 -27.29759 -26.59070 -25.41296 -23.26885 -22.12639 -21.74612 -20.82528 -20.37609 -19.11468 -18.23245 -17.23200 -16.46771 -16.36773 -16.20600 -15.48306 -15.13530 -14.89579 -14.42163 -14.13388 -13.90143 -13.57875 -13.46223 -12.99411 -12.74861 -12.47609 -12.33444 -12.24315 -12.07235 -11.84039 -11.79799 -11.70011 -11.69670 -11.41205 -11.22372 -11.19964 -10.99120 -10.93484 -10.88181 -10.79627 -10.60518 -10.17336 -10.15168 -9.93360 -9.75118 -9.69113 -9.47096 -9.24340 -8.98774 -8.46025 -8.11282 -7.35924 -6.13432 -4.22480 2.41757 3.21816 3.27997 3.28839 3.30621 4.17783 4.30014 4.48541 4.60579 4.80873 4.84499 4.98425 5.13645 5.21389 5.46014 5.48894 5.57126 5.58427 5.61746 5.63010 5.70920 5.71970 5.81377 5.88188 5.92693 5.96239 6.02479 6.11847 6.13761 6.25085 6.30059 6.31391 6.35769 6.39983 6.42186 6.43162 6.59451 6.63931 6.73616 6.81824 6.98367 7.02613 7.08274 7.29258 7.49129 7.68324 7.79974 7.97831 8.10663 8.20376 8.33915 8.75788 8.83748 9.41911 10.87790 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.004546 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.541325 B = 6157.511829 C = 7342.541412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.212 3.788 4 H 0.045 0.955 5 C -0.544 4.544 6 H 0.061 0.939 7 C 0.072 3.928 8 N -0.879 5.879 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.496 5.496 14 C 0.041 3.959 15 C -0.190 4.190 16 C -0.164 4.164 17 C 0.063 3.937 18 C 0.073 3.927 19 N -0.631 5.631 20 C 0.671 3.329 21 O -0.587 6.587 22 O -0.360 6.360 23 C 0.135 3.865 24 C -0.182 4.182 25 C -0.140 4.140 26 C -0.181 4.181 27 C 0.143 3.857 28 H 0.052 0.948 29 H 0.037 0.963 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.264 0.736 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.148 0.852 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.065 0.935 50 H 0.057 0.943 51 H 0.075 0.925 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.526 8.752 -4.007 9.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C 0.106 3.894 4 H 0.063 0.937 5 C -0.582 4.582 6 H 0.079 0.921 7 C -0.132 4.132 8 N -0.516 5.516 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.219 5.219 14 C -0.068 4.068 15 C -0.227 4.227 16 C -0.201 4.201 17 C -0.047 4.047 18 C -0.049 4.049 19 N -0.373 5.373 20 C 0.428 3.572 21 O -0.478 6.478 22 O -0.275 6.275 23 C 0.098 3.902 24 C -0.239 4.239 25 C -0.197 4.197 26 C -0.238 4.238 27 C 0.021 3.979 28 H 0.071 0.929 29 H 0.056 0.944 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.165 0.835 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.107 0.893 45 H 0.084 0.916 46 H 0.095 0.905 47 H 0.086 0.914 48 H 0.106 0.894 49 H 0.084 0.916 50 H 0.076 0.924 51 H 0.094 0.906 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.260 8.978 -3.670 9.959 hybrid contribution 2.045 0.221 0.383 2.093 sum -0.215 9.199 -3.287 9.771 Atomic orbital electron populations 1.21764 0.98946 0.98675 1.00665 1.21698 0.92147 0.99080 1.02175 1.19422 0.92797 0.91077 0.86079 0.93737 1.21641 0.92182 1.41936 1.02467 0.92117 1.24895 0.97905 0.94830 0.95583 1.69892 1.35399 1.40161 1.06118 0.86795 0.86262 0.78515 0.77381 1.20144 1.21286 1.20245 1.62141 1.53738 1.01553 1.04484 1.22008 0.95274 0.99704 0.89780 1.23052 1.00871 1.03721 0.95099 1.22978 1.03286 0.90958 1.02879 1.23373 0.94333 0.90257 0.96767 1.24987 0.92558 0.88329 0.99046 1.48879 1.13802 1.15537 1.59110 1.17494 0.81781 0.81236 0.76738 1.90828 1.35429 1.60835 1.60746 1.86351 1.31867 1.36821 1.72440 1.21970 0.96674 0.79659 0.91945 1.22504 1.02950 1.02323 0.96172 1.21840 0.93757 1.01597 1.02534 1.22504 1.03805 0.98193 0.99326 1.23219 0.90680 0.89546 0.94440 0.92870 0.94406 0.95580 0.90221 0.93230 0.92617 0.89756 0.89090 0.90119 0.89863 0.87881 0.88674 0.83505 0.91749 0.92172 0.91562 0.89349 0.91627 0.90470 0.91440 0.89352 0.91557 0.92409 0.90617 0.89156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.39 37.16 0.35 -2.27 16 2 C -0.11 -2.37 4.82 -26.73 -0.13 -2.49 16 3 C 0.21 4.48 1.10 -68.86 -0.08 4.40 16 4 H 0.04 1.07 5.95 -51.93 -0.31 0.76 16 5 C -0.54 -12.54 4.79 -34.44 -0.17 -12.71 16 6 H 0.06 1.41 5.83 -52.49 -0.31 1.10 16 7 C 0.07 1.77 5.31 -17.82 -0.09 1.68 16 8 N -0.88 -22.80 11.71 55.43 0.65 -22.15 16 9 Si 0.88 19.72 29.54 -169.99 -5.02 14.69 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.50 -8.91 3.84 -214.08 -0.82 -9.73 16 14 C 0.04 0.71 3.82 -67.71 -0.26 0.45 16 15 C -0.19 -2.71 10.46 -26.73 -0.28 -2.98 16 16 C -0.16 -2.59 8.61 -26.73 -0.23 -2.82 16 17 C 0.06 1.08 4.12 -69.92 -0.29 0.79 16 18 C 0.07 1.39 6.93 -2.83 -0.02 1.37 16 19 N -0.63 -11.91 3.61 -184.14 -0.67 -12.57 16 20 C 0.67 13.04 8.22 54.05 0.44 13.49 16 21 O -0.59 -11.89 12.61 -19.29 -0.24 -12.13 16 22 O -0.36 -6.53 9.87 -40.30 -0.40 -6.93 16 23 C 0.13 1.94 1.13 -90.63 -0.10 1.83 16 24 C -0.18 -2.54 8.37 37.16 0.31 -2.23 16 25 C -0.14 -1.60 8.85 37.15 0.33 -1.27 16 26 C -0.18 -2.38 8.37 37.16 0.31 -2.07 16 27 C 0.14 2.44 8.31 -2.97 -0.02 2.42 16 28 H 0.05 0.93 7.45 -51.93 -0.39 0.55 16 29 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.43 8.14 -51.92 -0.42 0.01 16 31 H 0.08 1.92 6.47 -51.93 -0.34 1.59 16 32 H 0.05 1.02 4.87 -51.93 -0.25 0.77 16 33 H 0.26 6.70 8.31 -40.82 -0.34 6.37 16 34 H 0.08 1.55 6.63 -51.93 -0.34 1.20 16 35 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.10 1.70 5.96 -51.93 -0.31 1.39 16 39 H 0.10 1.51 7.96 -51.93 -0.41 1.09 16 40 H 0.15 3.29 4.29 -51.93 -0.22 3.07 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.09 1.44 5.88 -51.93 -0.31 1.14 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.09 1.37 5.88 -51.93 -0.31 1.07 16 49 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 52 H 0.09 1.62 7.29 -51.93 -0.38 1.24 16 LS Contribution 391.87 15.07 5.91 5.91 Total: -1.00 -25.89 391.87 -9.44 -35.33 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -8.92 Total: 10.00 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: 0.08 Total: -2.42 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.84 Total: -44.45 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.64 Total: -19.06 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.69 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -25.89 -9.44 -35.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.862 kcal (2) G-P(sol) polarization free energy of solvation -25.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds