Wall clock time and date at job start Tue Mar 31 2020 15:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47023 * 2 1 4 4 H 1.08998 * 109.47058 * 58.64366 * 3 2 1 5 5 C 1.50700 * 109.47277 * 178.64842 * 3 2 1 6 6 H 1.07996 * 120.00407 * 114.70687 * 5 3 2 7 7 C 1.37879 * 119.99907 * 294.70262 * 5 3 2 8 8 N 1.31519 * 119.99962 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 120.00343 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.46908 * 59.99751 * 9 7 5 11 11 H 1.48489 * 109.47200 * 180.02562 * 9 7 5 12 12 H 1.48504 * 109.46624 * 300.00084 * 9 7 5 13 13 N 1.46902 * 109.47228 * 298.64952 * 3 2 1 14 14 C 1.46907 * 110.99767 * 286.84917 * 13 3 2 15 15 C 1.52998 * 117.49654 * 143.67711 * 14 13 3 16 16 C 1.53001 * 117.49839 * 75.05516 * 14 13 3 17 17 C 1.46901 * 111.00125 * 162.89821 * 13 3 2 18 18 C 1.53947 * 113.74014 * 23.82346 * 17 13 3 19 19 N 1.47822 * 86.03394 * 222.08536 * 18 17 13 20 20 C 1.34771 * 134.45522 * 204.64881 * 19 18 17 21 21 O 1.21518 * 119.99667 * 179.86619 * 20 19 18 22 22 O 1.34631 * 120.00289 * 359.85921 * 20 19 18 23 23 C 1.45204 * 117.00253 * 180.02562 * 22 20 19 24 24 C 1.52996 * 109.46990 * 60.00064 * 23 22 20 25 25 C 1.52993 * 109.47030 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.47064 * 300.00387 * 23 22 20 27 27 C 1.47584 * 91.04766 * 24.54627 * 19 18 17 28 28 H 1.08996 * 109.47138 * 55.36077 * 1 2 3 29 29 H 1.08995 * 109.46839 * 295.35229 * 1 2 3 30 30 H 1.09009 * 109.46688 * 175.35840 * 1 2 3 31 31 H 1.08997 * 109.47704 * 120.00113 * 2 1 3 32 32 H 1.09006 * 109.47058 * 240.00465 * 2 1 3 33 33 H 0.96996 * 120.00224 * 179.97438 * 8 7 5 34 34 H 1.09003 * 115.54958 * 289.39106 * 14 13 3 35 35 H 1.08992 * 117.49906 * 0.02562 * 15 14 13 36 36 H 1.09007 * 117.49645 * 145.02287 * 15 14 13 37 37 H 1.08999 * 117.49909 * 214.98162 * 16 14 13 38 38 H 1.09001 * 117.49686 * 0.02562 * 16 14 13 39 39 H 1.08996 * 112.94362 * 155.41113 * 17 13 3 40 40 H 1.09000 * 113.77051 * 336.34375 * 18 17 13 41 41 H 1.08994 * 113.76915 * 107.75038 * 18 17 13 42 42 H 1.09007 * 109.47225 * 60.00264 * 24 23 22 43 43 H 1.09001 * 109.47220 * 179.97438 * 24 23 22 44 44 H 1.09005 * 109.47373 * 300.00223 * 24 23 22 45 45 H 1.09000 * 109.47266 * 60.00685 * 25 23 22 46 46 H 1.09002 * 109.46995 * 179.97438 * 25 23 22 47 47 H 1.08999 * 109.47571 * 300.00114 * 25 23 22 48 48 H 1.08994 * 109.47433 * 59.99564 * 26 23 22 49 49 H 1.09001 * 109.46947 * 179.97438 * 26 23 22 50 50 H 1.09004 * 109.47071 * 299.99797 * 26 23 22 51 51 H 1.09000 * 113.76944 * 221.15162 * 27 19 18 52 52 H 1.08999 * 113.86728 * 89.77395 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6569 1.9633 0.8776 5 6 3.5466 1.4427 0.0335 6 1 4.1054 1.8270 -0.8069 7 6 4.2117 0.9523 1.1373 8 7 3.5312 0.4839 2.1606 9 14 6.0792 0.9532 1.1792 10 1 6.5765 2.3465 1.0504 11 1 6.5457 0.3775 2.4661 12 1 6.5999 0.1357 0.0541 13 7 1.5771 2.1255 -1.2154 14 6 2.3125 1.6541 -2.3966 15 6 1.5365 1.5320 -3.7095 16 6 1.9535 0.2726 -2.9473 17 6 1.6870 3.5836 -1.0742 18 6 2.7334 4.0287 -0.0364 19 7 1.7337 5.0305 0.3902 20 6 1.8003 6.2269 1.0070 21 8 0.7824 6.8500 1.2359 22 8 2.9945 6.7318 1.3699 23 6 2.9904 8.0248 2.0305 24 6 2.1727 7.9358 3.3205 25 6 4.4271 8.4317 2.3638 26 6 2.3672 9.0696 1.1027 27 6 0.6344 4.1961 -0.1326 28 1 -0.3633 0.5841 -0.8455 29 1 -0.3633 0.4400 0.9287 30 1 -0.3633 -1.0244 -0.0832 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 3.9990 0.1386 2.9370 34 1 3.3560 1.9637 -2.4552 35 1 0.4806 1.8017 -3.6970 36 1 2.0694 1.7614 -4.6323 37 1 2.7608 -0.3266 -3.3686 38 1 1.1715 -0.2864 -2.4335 39 1 1.7720 4.0980 -2.0314 40 1 2.9501 3.2746 0.7202 41 1 3.6315 4.4622 -0.4762 42 1 2.6167 7.1915 3.9816 43 1 2.1700 8.9064 3.8167 44 1 1.1491 7.6461 3.0827 45 1 5.0093 8.4953 1.4445 46 1 4.4241 9.4026 2.8593 47 1 4.8716 7.6875 3.0246 48 1 1.3437 8.7799 0.8648 49 1 2.3637 10.0401 1.5988 50 1 2.9497 9.1330 0.1835 51 1 -0.1401 4.7631 -0.6491 52 1 0.2318 3.4909 0.5944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255174676.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:50 Heat of formation + Delta-G solvation = -15.744001 kcal Electronic energy + Delta-G solvation = -30139.594679 eV Core-core repulsion = 26334.631901 eV Total energy + Delta-G solvation = -3804.962778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.93639 -40.85554 -38.64095 -37.41545 -35.86907 -35.02910 -33.69922 -32.70071 -29.50857 -28.38067 -28.34101 -28.25464 -26.92045 -24.97031 -23.46628 -22.97606 -22.36270 -21.72746 -20.55287 -19.73784 -18.71849 -18.13322 -17.71538 -17.69844 -16.94170 -16.69635 -16.21145 -15.92789 -15.39898 -15.30694 -14.97558 -14.89740 -14.42075 -14.25013 -13.88700 -13.65605 -13.37289 -13.32819 -13.28461 -13.08105 -12.95095 -12.92101 -12.88229 -12.87156 -12.68613 -12.47054 -12.36568 -12.27886 -12.15090 -12.09768 -11.80921 -11.47907 -11.40008 -11.38993 -11.12329 -11.02782 -10.68092 -10.52123 -10.30291 -9.64561 -8.92982 -8.00858 -6.13928 1.06123 1.40649 1.44161 1.47448 1.78854 2.43925 2.81574 3.15263 3.18624 3.29940 3.74441 3.78100 3.79853 3.93350 4.09071 4.20171 4.35318 4.36879 4.42730 4.50528 4.57422 4.59590 4.62214 4.68903 4.72496 4.73078 4.79747 4.84537 4.85120 4.88278 4.93991 5.01347 5.01853 5.07516 5.08231 5.26249 5.28047 5.31665 5.32551 5.44945 5.50732 5.51462 5.55976 5.63506 5.72316 5.90763 6.12189 6.24415 6.39180 6.66299 6.75518 7.02927 7.28308 7.52121 8.97060 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011598 B = 0.004546 C = 0.003812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.541325 B = 6157.511829 C = 7342.541412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.108 4.108 3 C 0.224 3.776 4 H 0.013 0.987 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.028 3.972 8 N -0.909 5.909 9 Si 0.928 3.072 10 H -0.276 1.276 11 H -0.294 1.294 12 H -0.273 1.273 13 N -0.487 5.487 14 C 0.014 3.986 15 C -0.154 4.154 16 C -0.169 4.169 17 C 0.076 3.924 18 C 0.076 3.924 19 N -0.636 5.636 20 C 0.666 3.334 21 O -0.599 6.599 22 O -0.375 6.375 23 C 0.118 3.882 24 C -0.178 4.178 25 C -0.135 4.135 26 C -0.174 4.174 27 C 0.145 3.855 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.054 0.946 33 H 0.258 0.742 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.060 0.940 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.059 0.941 48 H 0.061 0.939 49 H 0.097 0.903 50 H 0.061 0.939 51 H 0.096 0.904 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.498 10.175 -5.891 11.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.147 4.147 3 C 0.117 3.883 4 H 0.030 0.970 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.172 4.172 8 N -0.549 5.549 9 Si 0.756 3.244 10 H -0.201 1.201 11 H -0.220 1.220 12 H -0.198 1.198 13 N -0.210 5.210 14 C -0.095 4.095 15 C -0.192 4.192 16 C -0.206 4.206 17 C -0.034 4.034 18 C -0.047 4.047 19 N -0.379 5.379 20 C 0.422 3.578 21 O -0.491 6.491 22 O -0.290 6.290 23 C 0.082 3.918 24 C -0.235 4.235 25 C -0.192 4.192 26 C -0.231 4.231 27 C 0.024 3.976 28 H 0.083 0.917 29 H 0.046 0.954 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.122 0.878 37 H 0.108 0.892 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.130 0.870 41 H 0.084 0.916 42 H 0.070 0.930 43 H 0.117 0.883 44 H 0.078 0.922 45 H 0.087 0.913 46 H 0.129 0.871 47 H 0.078 0.922 48 H 0.080 0.920 49 H 0.115 0.885 50 H 0.080 0.920 51 H 0.115 0.885 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.225 10.409 -5.573 12.015 hybrid contribution 2.036 -0.147 0.972 2.261 sum -0.189 10.261 -4.601 11.247 Atomic orbital electron populations 1.21625 0.96740 0.99854 1.00582 1.21565 0.94076 0.98439 1.00604 1.19102 0.91511 0.91182 0.86466 0.96964 1.21864 0.93393 1.39814 1.01641 0.92148 1.25440 1.00597 0.95420 0.95774 1.70015 1.36207 1.42030 1.06606 0.86072 0.83195 0.78233 0.76930 1.20141 1.22020 1.19816 1.62084 1.53408 1.01824 1.03641 1.22057 0.95212 1.01414 0.90822 1.23086 1.01037 1.00979 0.94086 1.23002 1.03414 0.90941 1.03246 1.23401 0.93048 0.89836 0.97154 1.24690 0.93386 0.87908 0.98706 1.49016 1.14169 1.15498 1.59172 1.17669 0.82105 0.81347 0.76633 1.90819 1.35955 1.61220 1.61149 1.86358 1.31276 1.38790 1.72614 1.22495 0.98832 0.78487 0.92031 1.22461 1.00987 1.03861 0.96209 1.21882 0.91497 1.02966 1.02839 1.22432 1.01925 0.99138 0.99600 1.23243 0.90940 0.89340 0.94122 0.91713 0.95411 0.93944 0.93739 0.92744 0.93284 0.91088 0.88273 0.87823 0.89184 0.88619 0.86361 0.87001 0.91617 0.93010 0.88259 0.92151 0.91330 0.87130 0.92178 0.92026 0.88465 0.92041 0.88535 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.71 9.39 71.98 0.68 -4.04 16 2 C -0.11 -4.61 4.82 30.59 0.15 -4.46 16 3 C 0.22 9.64 1.10 44.17 0.05 9.69 16 4 H 0.01 0.62 5.95 -2.39 -0.01 0.61 16 5 C -0.53 -24.82 4.79 25.60 0.12 -24.70 16 6 H 0.06 2.81 5.83 -2.91 -0.02 2.79 16 7 C 0.03 1.42 5.31 84.65 0.45 1.87 16 8 N -0.91 -49.17 11.71 21.45 0.25 -48.92 16 9 Si 0.93 41.23 29.54 68.60 2.03 43.26 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 13 N -0.49 -17.09 3.84 -831.22 -3.19 -20.28 16 14 C 0.01 0.45 3.82 44.91 0.17 0.62 16 15 C -0.15 -3.85 10.46 30.59 0.32 -3.53 16 16 C -0.17 -4.95 8.61 30.60 0.26 -4.69 16 17 C 0.08 2.53 4.12 46.67 0.19 2.72 16 18 C 0.08 2.93 6.93 86.44 0.60 3.53 16 19 N -0.64 -24.23 3.61 -966.90 -3.49 -27.72 16 20 C 0.67 26.15 8.22 129.79 1.07 27.22 16 21 O -0.60 -24.52 12.61 19.78 0.25 -24.28 16 22 O -0.38 -13.68 9.87 -55.40 -0.55 -14.23 16 23 C 0.12 3.25 1.13 -10.80 -0.01 3.24 16 24 C -0.18 -4.83 8.37 71.98 0.60 -4.23 16 25 C -0.13 -2.80 8.85 71.98 0.64 -2.16 16 26 C -0.17 -4.28 8.37 71.98 0.60 -3.68 16 27 C 0.14 4.90 8.31 86.48 0.72 5.62 16 28 H 0.06 2.17 7.45 -2.39 -0.02 2.15 16 29 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.04 2.21 6.47 -2.39 -0.02 2.20 16 32 H 0.05 2.23 4.87 -2.38 -0.01 2.22 16 33 H 0.26 13.70 8.31 -92.71 -0.77 12.92 16 34 H 0.07 2.51 6.63 -2.39 -0.02 2.49 16 35 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 37 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.10 2.97 5.96 -2.39 -0.01 2.96 16 39 H 0.12 3.45 7.96 -2.39 -0.02 3.43 16 40 H 0.11 5.22 4.29 -2.39 -0.01 5.21 16 41 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.05 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.06 1.99 5.88 -2.38 -0.01 1.98 16 45 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.06 1.87 5.88 -2.39 -0.01 1.86 16 49 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 50 H 0.06 1.44 8.14 -2.38 -0.02 1.43 16 51 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 52 H 0.08 2.81 7.29 -2.39 -0.02 2.79 16 Total: -1.00 -58.10 391.87 2.80 -55.30 By element: Atomic # 1 Polarization: 32.95 SS G_CDS: 0.90 Total: 33.84 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 6.61 Total: 3.02 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -6.43 Total: -96.92 kcal Atomic # 8 Polarization: -38.21 SS G_CDS: -0.30 Total: -38.51 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -58.10 2.80 -55.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255174676.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.554 kcal (2) G-P(sol) polarization free energy of solvation -58.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds