Wall clock time and date at job start Tue Mar 31 2020 15:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 H 1.09006 * 109.46783 * 177.87686 * 3 2 1 5 5 C 1.50696 * 109.47181 * 297.87473 * 3 2 1 6 6 H 1.07994 * 120.00143 * 120.00393 * 5 3 2 7 7 C 1.37879 * 120.00019 * 299.99951 * 5 3 2 8 8 N 1.31515 * 120.00062 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00021 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46776 * 89.99862 * 9 7 5 11 11 H 1.48501 * 109.46872 * 209.99805 * 9 7 5 12 12 H 1.48501 * 109.47065 * 329.99903 * 9 7 5 13 13 N 1.46893 * 109.47073 * 57.87556 * 3 2 1 14 14 C 1.46671 * 111.00014 * 58.88676 * 13 3 2 15 15 C 1.53468 * 109.89221 * 124.25829 * 14 13 3 16 16 H 1.08998 * 110.90274 * 181.82378 * 15 14 13 17 17 C 1.53490 * 108.17337 * 60.01100 * 15 14 13 18 18 C 1.53067 * 109.08260 * 301.70425 * 17 15 14 19 19 C 1.46841 * 111.00005 * 184.54603 * 13 3 2 20 20 H 1.09008 * 109.63340 * 55.76163 * 19 13 3 21 21 C 1.53664 * 109.15230 * 295.04469 * 19 13 3 22 22 N 1.47708 * 106.42109 * 300.77661 * 21 19 13 23 23 C 1.34769 * 122.33847 * 180.35495 * 22 21 19 24 24 O 1.21505 * 120.00794 * 180.02562 * 23 22 21 25 25 O 1.34641 * 119.99625 * 0.02562 * 23 22 21 26 26 C 1.45201 * 117.00032 * 180.02562 * 25 23 22 27 27 C 1.53007 * 109.47021 * 60.00208 * 26 25 23 28 28 C 1.52997 * 109.47397 * 180.02562 * 26 25 23 29 29 C 1.53008 * 109.47313 * 300.00582 * 26 25 23 30 30 H 1.08998 * 109.47453 * 185.53008 * 1 2 3 31 31 H 1.09008 * 109.46550 * 305.52803 * 1 2 3 32 32 H 1.08998 * 109.47108 * 65.52799 * 1 2 3 33 33 H 1.09005 * 109.46395 * 239.99883 * 2 1 3 34 34 H 1.09001 * 109.46747 * 120.00745 * 2 1 3 35 35 H 0.96997 * 120.00448 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.39920 * 244.38588 * 14 13 3 37 37 H 1.08998 * 109.40444 * 4.21251 * 14 13 3 38 38 H 1.08999 * 109.53398 * 181.82606 * 17 15 14 39 39 H 1.08997 * 109.53357 * 61.58888 * 17 15 14 40 40 H 1.08997 * 109.43972 * 240.31182 * 18 17 15 41 41 H 1.09003 * 109.43649 * 120.43845 * 18 17 15 42 42 H 1.09001 * 110.05442 * 59.99649 * 21 19 13 43 43 H 1.08993 * 110.06059 * 181.54630 * 21 19 13 44 44 H 1.08996 * 109.46862 * 59.99969 * 27 26 25 45 45 H 1.08999 * 109.46853 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.47248 * 299.99971 * 27 26 25 47 47 H 1.09006 * 109.46911 * 60.00382 * 28 26 25 48 48 H 1.08999 * 109.47549 * 179.97438 * 28 26 25 49 49 H 1.08996 * 109.47101 * 300.00407 * 28 26 25 50 50 H 1.08998 * 109.47293 * 59.99823 * 29 26 25 51 51 H 1.08999 * 109.47329 * 180.02562 * 29 26 25 52 52 H 1.08999 * 109.46558 * 300.00057 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 0.0381 5 6 1.5813 2.1375 -1.2559 6 1 0.9576 3.0166 -1.1895 7 6 1.9578 1.6511 -2.4899 8 7 1.5578 2.2579 -3.5859 9 14 3.0362 0.1301 -2.6049 10 1 2.1788 -1.0810 -2.6656 11 1 3.8716 0.2071 -3.8302 12 1 3.9151 0.0550 -1.4103 13 7 1.5090 2.1496 1.1729 14 6 1.9144 1.4845 2.4157 15 6 2.6416 2.4814 3.3282 16 1 2.9787 1.9958 4.2440 17 6 1.6777 3.6338 3.6426 18 6 1.2335 4.2865 2.3313 19 6 1.8898 3.5675 1.1495 20 1 1.5581 4.0205 0.2152 21 6 3.4167 3.6817 1.2799 22 7 3.7756 3.0390 2.5605 23 6 5.0480 2.9657 2.9986 24 8 5.2955 2.4267 4.0590 25 8 6.0451 3.4899 2.2611 26 6 7.3906 3.3740 2.7944 27 6 7.7435 1.8957 2.9714 28 6 8.3810 4.0227 1.8253 29 6 7.4652 4.0818 4.1489 30 1 -0.3634 -1.0228 0.0990 31 1 -0.3633 0.5972 0.8364 32 1 -0.3633 0.4257 -0.9353 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 1.8224 1.9156 -4.4541 36 1 1.0305 1.1035 2.9274 37 1 2.5826 0.6558 2.1817 38 1 2.1834 4.3725 4.2644 39 1 0.8063 3.2463 4.1705 40 1 1.5313 5.3350 2.3288 41 1 0.1494 4.2178 2.2409 42 1 3.9022 3.1637 0.4527 43 1 3.7136 4.7303 1.2917 44 1 7.6904 1.3915 2.0065 45 1 8.7538 1.8088 3.3713 46 1 7.0380 1.4339 3.6620 47 1 8.1295 5.0759 1.6997 48 1 9.3910 3.9362 2.2259 49 1 8.3280 3.5189 0.8603 50 1 6.7596 3.6199 4.8395 51 1 8.4753 3.9952 4.5490 52 1 7.2137 5.1348 4.0228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255180064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:31 Heat of formation + Delta-G solvation = -60.887395 kcal Electronic energy + Delta-G solvation = -30989.777787 eV Core-core repulsion = 27182.857444 eV Total energy + Delta-G solvation = -3806.920342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.03011 -39.82846 -36.85248 -35.52187 -34.14255 -32.64237 -32.02942 -31.46325 -30.52813 -27.45498 -27.41182 -27.08675 -25.55755 -23.65284 -23.31188 -22.65932 -21.51494 -19.70338 -19.66772 -18.10371 -16.96182 -16.50231 -16.44502 -16.07789 -15.84709 -15.27934 -15.07553 -14.53712 -14.23366 -14.02131 -13.73905 -13.26620 -13.11245 -13.01888 -12.80443 -12.55631 -12.52336 -12.49664 -12.19174 -12.06931 -11.92125 -11.91066 -11.78996 -11.73370 -11.50282 -11.26379 -11.16456 -10.91162 -10.75050 -10.57482 -10.34806 -10.30560 -10.15514 -10.05583 -9.86643 -9.80222 -9.36203 -8.98734 -8.57436 -8.38986 -7.33151 -6.11577 -4.09542 2.27654 3.03273 3.23779 3.34914 3.35417 3.98461 4.36033 4.54882 4.69140 4.73096 4.87038 4.96782 5.06809 5.13912 5.20333 5.26126 5.39849 5.47280 5.50948 5.56388 5.62323 5.62974 5.71305 5.77730 5.81312 5.84694 5.90036 5.93791 6.00177 6.07498 6.11993 6.20073 6.21543 6.23957 6.26074 6.30518 6.32716 6.45874 6.55293 6.66812 6.69203 6.72386 6.91111 7.03139 7.12008 7.39048 7.56831 7.63117 7.88510 8.02258 8.53451 8.58610 8.93460 9.51135 11.00633 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.005106 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.391720 B = 5482.020000 C = 6548.160961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.121 4.121 3 C 0.185 3.815 4 H 0.000 1.000 5 C -0.501 4.501 6 H 0.084 0.916 7 C 0.075 3.925 8 N -0.896 5.896 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.271 1.271 13 N -0.510 5.510 14 C 0.043 3.957 15 C 0.141 3.859 16 H 0.105 0.895 17 C -0.123 4.123 18 C -0.112 4.112 19 C 0.085 3.915 20 H 0.120 0.880 21 C 0.087 3.913 22 N -0.591 5.591 23 C 0.657 3.343 24 O -0.582 6.582 25 O -0.359 6.359 26 C 0.135 3.865 27 C -0.183 4.183 28 C -0.141 4.141 29 C -0.181 4.181 30 H 0.021 0.979 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.032 0.968 35 H 0.264 0.736 36 H 0.078 0.922 37 H 0.054 0.946 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.059 0.941 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.067 0.933 50 H 0.087 0.913 51 H 0.067 0.933 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 3.208 13.669 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.078 3.922 4 H 0.017 0.983 5 C -0.539 4.539 6 H 0.102 0.898 7 C -0.127 4.127 8 N -0.534 5.534 9 Si 0.709 3.291 10 H -0.205 1.205 11 H -0.225 1.225 12 H -0.196 1.196 13 N -0.234 5.234 14 C -0.086 4.086 15 C 0.038 3.962 16 H 0.123 0.877 17 C -0.162 4.162 18 C -0.150 4.150 19 C -0.024 4.024 20 H 0.138 0.862 21 C -0.036 4.036 22 N -0.331 5.331 23 C 0.413 3.587 24 O -0.473 6.473 25 O -0.273 6.273 26 C 0.098 3.902 27 C -0.240 4.240 28 C -0.198 4.198 29 C -0.238 4.238 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.086 0.914 46 H 0.106 0.894 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.086 0.914 50 H 0.106 0.894 51 H 0.086 0.914 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.895 3.034 13.750 15.678 hybrid contribution 1.664 -0.964 -0.245 1.939 sum 8.559 2.070 13.504 16.122 Atomic orbital electron populations 1.21462 0.95199 0.98154 1.03305 1.21897 0.97670 0.98013 0.98302 1.19808 0.92546 0.90646 0.89196 0.98306 1.20874 1.32077 1.13324 0.87600 0.89789 1.24848 0.95516 0.96513 0.95787 1.69862 1.45495 1.40412 0.97667 0.87003 0.80962 0.84240 0.76901 1.20462 1.22528 1.19603 1.61814 1.59482 1.00812 1.01267 1.22646 0.98221 0.95892 0.91834 1.21896 0.84387 0.94715 0.95188 0.87713 1.21955 0.98615 0.97379 0.98206 1.21619 1.01414 0.98415 0.93526 1.22003 0.89812 0.90477 1.00092 0.86216 1.22697 0.99094 0.97503 0.84328 1.47516 1.02702 1.59662 1.23269 1.17895 0.81448 0.77606 0.81769 1.90830 1.82996 1.49639 1.23827 1.86357 1.16316 1.74553 1.50117 1.22011 0.77814 0.96379 0.94028 1.22505 1.02908 0.95135 1.03431 1.21847 0.97137 1.01445 0.99340 1.22496 1.03519 1.00666 0.97100 0.96032 0.92177 0.91679 0.93663 0.94913 0.92624 0.90357 0.92804 0.92158 0.90545 0.91973 0.90680 0.89967 0.91454 0.92190 0.91428 0.89421 0.91509 0.90388 0.91370 0.89423 0.91445 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 9.50 37.16 0.35 -2.11 16 2 C -0.12 -2.58 4.87 -26.73 -0.13 -2.71 16 3 C 0.19 4.08 0.78 -68.87 -0.05 4.03 16 4 H 0.00 -0.01 5.70 -51.93 -0.30 -0.31 16 5 C -0.50 -12.77 7.40 -34.44 -0.25 -13.02 16 6 H 0.08 2.31 6.61 -52.49 -0.35 1.96 16 7 C 0.08 2.05 5.45 -17.82 -0.10 1.96 16 8 N -0.90 -26.01 13.96 55.43 0.77 -25.24 16 9 Si 0.88 21.53 24.39 -169.99 -4.15 17.38 16 10 H -0.28 -6.71 6.85 56.52 0.39 -6.32 16 11 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 12 H -0.27 -6.54 6.53 56.52 0.37 -6.17 16 13 N -0.51 -9.46 3.57 -219.56 -0.78 -10.25 16 14 C 0.04 0.70 5.17 -3.71 -0.02 0.68 16 15 C 0.14 2.11 3.62 -66.68 -0.24 1.87 16 16 H 0.10 1.56 7.30 -51.93 -0.38 1.18 16 17 C -0.12 -1.58 5.90 -26.44 -0.16 -1.74 16 18 C -0.11 -1.54 5.85 -26.64 -0.16 -1.70 16 19 C 0.09 1.46 2.75 -67.34 -0.19 1.28 16 20 H 0.12 2.31 6.07 -51.92 -0.32 2.00 16 21 C 0.09 1.50 5.51 -3.03 -0.02 1.48 16 22 N -0.59 -9.88 2.82 -168.89 -0.48 -10.36 16 23 C 0.66 11.42 7.81 54.05 0.42 11.84 16 24 O -0.58 -10.53 11.53 -19.28 -0.22 -10.75 16 25 O -0.36 -5.88 9.31 -40.33 -0.38 -6.26 16 26 C 0.13 1.77 1.13 -90.61 -0.10 1.66 16 27 C -0.18 -2.36 8.37 37.16 0.31 -2.05 16 28 C -0.14 -1.47 8.85 37.16 0.33 -1.14 16 29 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 1.13 7.37 -51.92 -0.38 0.75 16 32 H 0.06 1.45 7.48 -51.93 -0.39 1.06 16 33 H 0.05 1.04 3.24 -51.93 -0.17 0.87 16 34 H 0.03 0.63 6.50 -51.93 -0.34 0.30 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.97 6.22 -51.93 -0.32 0.64 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.08 1.64 6.64 -51.93 -0.34 1.30 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.09 1.33 5.88 -51.93 -0.31 1.02 16 47 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 50 H 0.09 1.24 5.88 -51.93 -0.31 0.93 16 51 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 52 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 374.59 15.07 5.64 5.64 Total: -1.00 -28.92 374.59 -8.27 -37.19 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -8.99 Total: 4.14 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 0.31 Total: -1.50 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.49 Total: -45.85 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.60 Total: -17.01 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.15 Total: 17.38 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.92 -8.27 -37.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.701 kcal (2) G-P(sol) polarization free energy of solvation -28.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds