Wall clock time and date at job start Tue Mar 31 2020 15:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 H 1.09006 * 109.46783 * 177.87686 * 3 2 1 5 5 C 1.50696 * 109.47181 * 297.87473 * 3 2 1 6 6 H 1.07994 * 120.00143 * 120.00393 * 5 3 2 7 7 C 1.37879 * 120.00019 * 299.99951 * 5 3 2 8 8 N 1.31515 * 120.00062 * 180.02562 * 7 5 3 9 9 Si 1.86802 * 120.00021 * 0.02562 * 7 5 3 10 10 H 1.48501 * 109.46776 * 89.99862 * 9 7 5 11 11 H 1.48501 * 109.46872 * 209.99805 * 9 7 5 12 12 H 1.48501 * 109.47065 * 329.99903 * 9 7 5 13 13 N 1.46893 * 109.47073 * 57.87556 * 3 2 1 14 14 C 1.46671 * 111.00014 * 58.88676 * 13 3 2 15 15 C 1.53468 * 109.89221 * 124.25829 * 14 13 3 16 16 H 1.08998 * 110.90274 * 181.82378 * 15 14 13 17 17 C 1.53490 * 108.17337 * 60.01100 * 15 14 13 18 18 C 1.53067 * 109.08260 * 301.70425 * 17 15 14 19 19 C 1.46841 * 111.00005 * 184.54603 * 13 3 2 20 20 H 1.09008 * 109.63340 * 55.76163 * 19 13 3 21 21 C 1.53664 * 109.15230 * 295.04469 * 19 13 3 22 22 N 1.47708 * 106.42109 * 300.77661 * 21 19 13 23 23 C 1.34769 * 122.33847 * 180.35495 * 22 21 19 24 24 O 1.21505 * 120.00794 * 180.02562 * 23 22 21 25 25 O 1.34641 * 119.99625 * 0.02562 * 23 22 21 26 26 C 1.45201 * 117.00032 * 180.02562 * 25 23 22 27 27 C 1.53007 * 109.47021 * 60.00208 * 26 25 23 28 28 C 1.52997 * 109.47397 * 180.02562 * 26 25 23 29 29 C 1.53008 * 109.47313 * 300.00582 * 26 25 23 30 30 H 1.08998 * 109.47453 * 185.53008 * 1 2 3 31 31 H 1.09008 * 109.46550 * 305.52803 * 1 2 3 32 32 H 1.08998 * 109.47108 * 65.52799 * 1 2 3 33 33 H 1.09005 * 109.46395 * 239.99883 * 2 1 3 34 34 H 1.09001 * 109.46747 * 120.00745 * 2 1 3 35 35 H 0.96997 * 120.00448 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.39920 * 244.38588 * 14 13 3 37 37 H 1.08998 * 109.40444 * 4.21251 * 14 13 3 38 38 H 1.08999 * 109.53398 * 181.82606 * 17 15 14 39 39 H 1.08997 * 109.53357 * 61.58888 * 17 15 14 40 40 H 1.08997 * 109.43972 * 240.31182 * 18 17 15 41 41 H 1.09003 * 109.43649 * 120.43845 * 18 17 15 42 42 H 1.09001 * 110.05442 * 59.99649 * 21 19 13 43 43 H 1.08993 * 110.06059 * 181.54630 * 21 19 13 44 44 H 1.08996 * 109.46862 * 59.99969 * 27 26 25 45 45 H 1.08999 * 109.46853 * 179.97438 * 27 26 25 46 46 H 1.08998 * 109.47248 * 299.99971 * 27 26 25 47 47 H 1.09006 * 109.46911 * 60.00382 * 28 26 25 48 48 H 1.08999 * 109.47549 * 179.97438 * 28 26 25 49 49 H 1.08996 * 109.47101 * 300.00407 * 28 26 25 50 50 H 1.08998 * 109.47293 * 59.99823 * 29 26 25 51 51 H 1.08999 * 109.47329 * 180.02562 * 29 26 25 52 52 H 1.08999 * 109.46558 * 300.00057 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1295 1.4426 0.0381 5 6 1.5813 2.1375 -1.2559 6 1 0.9576 3.0166 -1.1895 7 6 1.9578 1.6511 -2.4899 8 7 1.5578 2.2579 -3.5859 9 14 3.0362 0.1301 -2.6049 10 1 2.1788 -1.0810 -2.6656 11 1 3.8716 0.2071 -3.8302 12 1 3.9151 0.0550 -1.4103 13 7 1.5090 2.1496 1.1729 14 6 1.9144 1.4845 2.4157 15 6 2.6416 2.4814 3.3282 16 1 2.9787 1.9958 4.2440 17 6 1.6777 3.6338 3.6426 18 6 1.2335 4.2865 2.3313 19 6 1.8898 3.5675 1.1495 20 1 1.5581 4.0205 0.2152 21 6 3.4167 3.6817 1.2799 22 7 3.7756 3.0390 2.5605 23 6 5.0480 2.9657 2.9986 24 8 5.2955 2.4267 4.0590 25 8 6.0451 3.4899 2.2611 26 6 7.3906 3.3740 2.7944 27 6 7.7435 1.8957 2.9714 28 6 8.3810 4.0227 1.8253 29 6 7.4652 4.0818 4.1489 30 1 -0.3634 -1.0228 0.0990 31 1 -0.3633 0.5972 0.8364 32 1 -0.3633 0.4257 -0.9353 33 1 1.8933 -0.5139 -0.8901 34 1 1.8933 -0.5140 0.8899 35 1 1.8224 1.9156 -4.4541 36 1 1.0305 1.1035 2.9274 37 1 2.5826 0.6558 2.1817 38 1 2.1834 4.3725 4.2644 39 1 0.8063 3.2463 4.1705 40 1 1.5313 5.3350 2.3288 41 1 0.1494 4.2178 2.2409 42 1 3.9022 3.1637 0.4527 43 1 3.7136 4.7303 1.2917 44 1 7.6904 1.3915 2.0065 45 1 8.7538 1.8088 3.3713 46 1 7.0380 1.4339 3.6620 47 1 8.1295 5.0759 1.6997 48 1 9.3910 3.9362 2.2259 49 1 8.3280 3.5189 0.8603 50 1 6.7596 3.6199 4.8395 51 1 8.4753 3.9952 4.5490 52 1 7.2137 5.1348 4.0228 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180064.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:30 Heat of formation + Delta-G solvation = -78.376940 kcal Electronic energy + Delta-G solvation = -30990.536190 eV Core-core repulsion = 27182.857444 eV Total energy + Delta-G solvation = -3807.678746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.33841 -41.10887 -38.16071 -37.09106 -35.31014 -34.24562 -33.68470 -32.80072 -31.98153 -28.88462 -28.39899 -28.33102 -26.94956 -25.33035 -24.67763 -24.00601 -22.81499 -21.40825 -20.83610 -19.38198 -18.64362 -18.02184 -17.70004 -17.52442 -17.28258 -16.55271 -16.41287 -16.24648 -15.44793 -15.33757 -14.94622 -14.82970 -14.68465 -14.42745 -14.36461 -13.93557 -13.85731 -13.54502 -13.41411 -13.18679 -13.14138 -13.13294 -12.93143 -12.89407 -12.88255 -12.64554 -12.59048 -12.39044 -12.31451 -12.13167 -12.01355 -11.65423 -11.55099 -11.41567 -11.30433 -11.18145 -11.06220 -10.83431 -10.64411 -9.73408 -8.87157 -8.25311 -6.23758 1.08242 1.24847 1.31127 1.37204 1.70749 2.30192 2.77016 3.06518 3.15379 3.71596 3.74769 3.78496 3.86310 3.86543 3.91730 3.96088 4.23827 4.31624 4.38818 4.41451 4.44721 4.50546 4.56813 4.58202 4.62249 4.65862 4.71974 4.75700 4.80218 4.80719 4.83353 4.84625 5.01647 5.04812 5.07680 5.12207 5.18530 5.23789 5.24821 5.29115 5.31131 5.36996 5.38154 5.46009 5.50616 5.67823 5.77001 6.05903 6.32030 6.41077 6.70981 6.82180 7.23306 7.39697 8.90203 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012573 B = 0.005106 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.391720 B = 5482.020000 C = 6548.160961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.124 4.124 3 C 0.194 3.806 4 H -0.024 1.024 5 C -0.481 4.481 6 H 0.057 0.943 7 C 0.027 3.973 8 N -0.941 5.941 9 Si 0.926 3.074 10 H -0.268 1.268 11 H -0.302 1.302 12 H -0.268 1.268 13 N -0.511 5.511 14 C 0.044 3.956 15 C 0.139 3.861 16 H 0.111 0.889 17 C -0.113 4.113 18 C -0.103 4.103 19 C 0.083 3.917 20 H 0.091 0.909 21 C 0.097 3.903 22 N -0.594 5.594 23 C 0.653 3.347 24 O -0.591 6.591 25 O -0.375 6.375 26 C 0.119 3.881 27 C -0.178 4.178 28 C -0.136 4.136 29 C -0.173 4.173 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.028 0.972 34 H 0.055 0.945 35 H 0.263 0.737 36 H 0.105 0.895 37 H 0.037 0.963 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.048 0.952 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.094 0.906 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.762 3.030 16.325 18.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.161 4.161 3 C 0.085 3.915 4 H -0.006 1.006 5 C -0.519 4.519 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.582 5.582 9 Si 0.756 3.244 10 H -0.195 1.195 11 H -0.230 1.230 12 H -0.193 1.193 13 N -0.234 5.234 14 C -0.084 4.084 15 C 0.038 3.962 16 H 0.129 0.871 17 C -0.151 4.151 18 C -0.141 4.141 19 C -0.026 4.026 20 H 0.108 0.892 21 C -0.027 4.027 22 N -0.335 5.335 23 C 0.408 3.592 24 O -0.483 6.483 25 O -0.289 6.289 26 C 0.083 3.917 27 C -0.235 4.235 28 C -0.193 4.193 29 C -0.230 4.230 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.088 0.912 48 H 0.127 0.873 49 H 0.077 0.923 50 H 0.082 0.918 51 H 0.113 0.887 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.438 2.849 16.435 18.263 hybrid contribution 1.537 -0.861 -1.020 2.035 sum 8.974 1.989 15.416 17.948 Atomic orbital electron populations 1.21358 0.93939 0.99777 1.02056 1.21878 0.98738 0.96972 0.98537 1.19544 0.91104 0.91525 0.89278 1.00621 1.21042 1.29915 1.11985 0.88997 0.92525 1.25442 0.96962 0.98937 0.95765 1.69979 1.47760 1.42281 0.98151 0.86206 0.79685 0.81959 0.76520 1.19477 1.22988 1.19333 1.61789 1.59196 1.01338 1.01083 1.22733 0.99159 0.95548 0.90984 1.22052 0.84145 0.95353 0.94696 0.87111 1.21927 0.98928 0.96596 0.97669 1.21560 1.01372 0.98805 0.92316 1.21972 0.90003 0.89979 1.00629 0.89152 1.22461 0.98786 0.97693 0.83727 1.47643 1.03173 1.59648 1.23008 1.18047 0.81750 0.77590 0.81798 1.90823 1.83207 1.50070 1.24235 1.86368 1.17555 1.74385 1.50631 1.22471 0.76777 0.96924 0.95500 1.22459 1.03959 0.94816 1.02272 1.21885 0.97864 1.01151 0.98401 1.22419 1.04522 1.00300 0.95744 0.93432 0.91010 0.94789 0.95370 0.92614 0.92797 0.87682 0.94492 0.91186 0.87992 0.90496 0.90053 0.93607 0.90210 0.93286 0.88437 0.91876 0.91184 0.87328 0.92302 0.91780 0.88683 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.35 9.50 71.98 0.68 -3.67 16 2 C -0.12 -5.13 4.87 30.59 0.15 -4.98 16 3 C 0.19 8.60 0.78 44.17 0.03 8.64 16 4 H -0.02 -1.16 5.70 -2.38 -0.01 -1.17 16 5 C -0.48 -25.35 7.40 25.60 0.19 -25.16 16 6 H 0.06 3.26 6.61 -2.91 -0.02 3.24 16 7 C 0.03 1.49 5.45 84.65 0.46 1.95 16 8 N -0.94 -56.66 13.96 21.45 0.30 -56.36 16 9 Si 0.93 45.39 24.39 68.60 1.67 47.06 16 10 H -0.27 -12.65 6.85 99.48 0.68 -11.96 16 11 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 12 H -0.27 -12.87 6.53 99.48 0.65 -12.22 16 13 N -0.51 -18.60 3.57 -848.57 -3.03 -21.63 16 14 C 0.04 1.36 5.17 86.50 0.45 1.80 16 15 C 0.14 3.89 3.62 45.05 0.16 4.05 16 16 H 0.11 3.03 7.30 -2.39 -0.02 3.01 16 17 C -0.11 -2.53 5.90 30.78 0.18 -2.35 16 18 C -0.10 -2.60 5.85 30.65 0.18 -2.42 16 19 C 0.08 2.85 2.75 45.19 0.12 2.97 16 20 H 0.09 3.63 6.07 -2.38 -0.01 3.61 16 21 C 0.10 3.39 5.51 86.37 0.48 3.86 16 22 N -0.59 -19.47 2.82 -918.66 -2.59 -22.06 16 23 C 0.65 22.42 7.81 129.79 1.01 23.43 16 24 O -0.59 -21.07 11.53 19.82 0.23 -20.84 16 25 O -0.37 -12.23 9.31 -55.50 -0.52 -12.75 16 26 C 0.12 2.99 1.13 -10.79 -0.01 2.97 16 27 C -0.18 -4.42 8.37 71.98 0.60 -3.82 16 28 C -0.14 -2.58 8.85 71.98 0.64 -1.95 16 29 C -0.17 -3.79 8.37 71.98 0.60 -3.19 16 30 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 2.54 7.37 -2.38 -0.02 2.52 16 32 H 0.03 1.49 7.48 -2.39 -0.02 1.47 16 33 H 0.03 1.27 3.24 -2.38 -0.01 1.26 16 34 H 0.06 2.06 6.50 -2.39 -0.02 2.04 16 35 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 36 H 0.11 2.71 8.14 -2.38 -0.02 2.69 16 37 H 0.04 1.27 6.22 -2.39 -0.01 1.25 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.92 6.64 -2.39 -0.02 1.90 16 43 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 46 H 0.06 1.89 5.88 -2.39 -0.01 1.88 16 47 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 48 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 49 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 50 H 0.06 1.74 5.88 -2.39 -0.01 1.72 16 51 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 52 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -65.14 374.59 2.81 -62.33 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.81 Total: 22.09 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.93 Total: 2.15 kcal Atomic # 7 Polarization: -94.73 SS G_CDS: -5.32 Total: -100.05 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.29 Total: -33.59 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.06 kcal Total: -65.14 2.81 -62.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180064.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.043 kcal (2) G-P(sol) polarization free energy of solvation -65.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds