Wall clock time and date at job start Tue Mar 31 2020 15:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47432 * 2 1 4 4 H 1.08990 * 109.47590 * 306.65789 * 3 2 1 5 5 C 1.50706 * 109.47207 * 186.65151 * 3 2 1 6 6 H 1.07997 * 120.00498 * 240.00513 * 5 3 2 7 7 C 1.37882 * 119.99466 * 60.00513 * 5 3 2 8 8 N 1.31513 * 119.99769 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99713 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47082 * 90.00264 * 9 7 5 11 11 H 1.48502 * 109.47028 * 210.00253 * 9 7 5 12 12 H 1.48498 * 109.47491 * 329.99878 * 9 7 5 13 13 N 1.46908 * 109.46851 * 66.65796 * 3 2 1 14 14 C 1.46656 * 110.99739 * 287.83953 * 13 3 2 15 15 C 1.53403 * 109.90139 * 233.51140 * 14 13 3 16 16 H 1.09003 * 110.88297 * 182.37592 * 15 14 13 17 17 C 1.53581 * 108.12848 * 60.61034 * 15 14 13 18 18 C 1.53091 * 109.00074 * 301.99012 * 17 15 14 19 19 C 1.46796 * 110.99755 * 162.20027 * 13 3 2 20 20 H 1.08994 * 109.63212 * 306.14590 * 19 13 3 21 21 C 1.53698 * 109.10751 * 185.47888 * 19 13 3 22 22 N 1.47753 * 106.38787 * 300.86162 * 21 19 13 23 23 C 1.34778 * 122.33171 * 180.17597 * 22 21 19 24 24 O 1.21511 * 119.99807 * 179.97438 * 23 22 21 25 25 O 1.34635 * 119.99955 * 359.97438 * 23 22 21 26 26 C 1.45202 * 116.99584 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.47624 * 59.99859 * 26 25 23 28 28 C 1.53003 * 109.47213 * 180.02562 * 26 25 23 29 29 C 1.53000 * 109.47140 * 299.99872 * 26 25 23 30 30 H 1.09001 * 109.46553 * 290.41935 * 1 2 3 31 31 H 1.08999 * 109.47398 * 170.41697 * 1 2 3 32 32 H 1.08995 * 109.46708 * 50.41427 * 1 2 3 33 33 H 1.08996 * 109.47094 * 120.00785 * 2 1 3 34 34 H 1.09003 * 109.47031 * 240.00427 * 2 1 3 35 35 H 0.97004 * 119.99554 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.40199 * 353.64094 * 14 13 3 37 37 H 1.09001 * 109.40160 * 113.47040 * 14 13 3 38 38 H 1.09003 * 109.54968 * 61.84497 * 17 15 14 39 39 H 1.08999 * 109.55389 * 182.03938 * 17 15 14 40 40 H 1.09006 * 109.43178 * 119.90182 * 18 17 15 41 41 H 1.09000 * 109.43236 * 239.80705 * 18 17 15 42 42 H 1.08992 * 110.06595 * 60.08041 * 21 19 13 43 43 H 1.09000 * 110.06096 * 181.64647 * 21 19 13 44 44 H 1.09000 * 109.46808 * 59.99523 * 27 26 25 45 45 H 1.08998 * 109.47276 * 179.97438 * 27 26 25 46 46 H 1.09007 * 109.46805 * 300.00268 * 27 26 25 47 47 H 1.08996 * 109.46914 * 59.99502 * 28 26 25 48 48 H 1.09000 * 109.47161 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.46641 * 300.00123 * 28 26 25 50 50 H 1.09001 * 109.47296 * 60.00253 * 29 26 25 51 51 H 1.08998 * 109.47060 * 180.02562 * 29 26 25 52 52 H 1.09002 * 109.46866 * 299.99812 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5828 1.9896 -0.8243 5 6 3.5381 1.4456 -0.1646 6 1 4.1644 1.8826 0.5990 7 6 4.1091 0.8904 -1.2902 8 7 3.3463 0.3587 -2.2202 9 14 5.9658 0.8949 -1.4946 10 1 6.5322 -0.3425 -0.9002 11 1 6.3046 0.9500 -2.9394 12 1 6.5367 2.0807 -0.8068 13 7 1.6859 2.0870 1.2717 14 6 0.2469 2.3622 1.3386 15 6 0.0130 3.8429 1.6641 16 1 -1.0517 4.0563 1.7590 17 6 0.6424 4.6837 0.5436 18 6 2.1324 4.3466 0.4444 19 6 2.4944 3.2920 1.4938 20 1 3.5524 3.0431 1.4131 21 6 2.1882 3.8527 2.8917 22 7 0.7408 4.1488 2.9143 23 6 0.1270 4.6625 3.9987 24 8 -1.0662 4.8902 3.9705 25 8 0.8360 4.9232 5.1131 26 6 0.1092 5.4750 6.2426 27 6 -0.9861 4.4967 6.6716 28 6 1.0744 5.7037 7.4076 29 6 -0.5263 6.8069 5.8387 30 1 -0.3632 0.3586 0.9631 31 1 -0.3634 -1.0133 -0.1711 32 1 -0.3632 0.6548 -0.7920 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.7480 -0.0323 -3.0119 36 1 -0.2119 2.1257 0.3786 37 1 -0.2037 1.7462 2.1168 38 1 0.1528 4.4549 -0.4030 39 1 0.5210 5.7430 0.7703 40 1 2.3508 3.9581 -0.5504 41 1 2.7205 5.2476 0.6190 42 1 2.4302 3.1114 3.6532 43 1 2.7594 4.7654 3.0618 44 1 -0.5333 3.5478 6.9594 45 1 -1.5313 4.9107 7.5198 46 1 -1.6736 4.3342 5.8415 47 1 1.8543 6.4009 7.1017 48 1 0.5287 6.1175 8.2556 49 1 1.5275 4.7551 7.6955 50 1 -1.2139 6.6444 5.0086 51 1 -1.0715 7.2213 6.6867 52 1 0.2540 7.5039 5.5331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255180065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:36 Heat of formation + Delta-G solvation = -60.377464 kcal Electronic energy + Delta-G solvation = -30525.610949 eV Core-core repulsion = 26718.712719 eV Total energy + Delta-G solvation = -3806.898230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.95084 -39.80440 -36.86852 -35.33509 -34.08077 -32.56383 -32.08759 -31.32170 -29.93989 -27.65854 -27.47718 -27.43405 -25.33909 -23.61645 -22.95699 -22.06825 -21.56212 -19.73746 -19.64004 -18.04312 -16.93494 -16.51822 -16.31955 -16.15822 -15.63026 -15.37545 -14.84958 -14.57932 -14.14029 -13.96543 -13.65602 -13.22123 -13.02640 -12.78764 -12.58898 -12.47931 -12.35657 -12.13675 -12.10675 -12.07460 -11.94467 -11.89165 -11.62114 -11.51091 -11.36815 -11.28186 -11.08786 -10.99233 -10.84102 -10.65683 -10.32552 -10.29654 -10.06205 -9.96340 -9.80224 -9.58226 -9.28646 -8.75724 -8.46239 -8.32003 -7.11401 -6.07669 -4.13756 2.28919 3.06001 3.26185 3.33656 3.35084 4.00177 4.34851 4.65979 4.69643 4.83697 4.84214 5.04614 5.15556 5.24169 5.26823 5.35873 5.38771 5.43985 5.51657 5.58742 5.66866 5.68768 5.73778 5.78772 5.85242 5.89265 5.93152 6.05533 6.12368 6.21132 6.22776 6.25780 6.30260 6.33601 6.37292 6.47386 6.47490 6.56102 6.65564 6.75571 6.86377 6.96793 7.13808 7.30063 7.52467 7.69323 7.71952 7.78945 8.14583 8.30426 8.53569 8.56903 8.93022 9.52051 10.97919 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.003599 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.478489 B = 7777.247747 C = 8290.143587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C 0.221 3.779 4 H 0.005 0.995 5 C -0.514 4.514 6 H 0.066 0.934 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.527 5.527 14 C 0.044 3.956 15 C 0.141 3.859 16 H 0.103 0.897 17 C -0.128 4.128 18 C -0.146 4.146 19 C 0.081 3.919 20 H 0.119 0.881 21 C 0.124 3.876 22 N -0.585 5.585 23 C 0.656 3.344 24 O -0.582 6.582 25 O -0.361 6.361 26 C 0.135 3.865 27 C -0.182 4.182 28 C -0.140 4.140 29 C -0.182 4.182 30 H 0.049 0.951 31 H 0.030 0.970 32 H 0.040 0.960 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.261 0.739 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.066 0.934 50 H 0.088 0.912 51 H 0.066 0.934 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.477 9.512 12.621 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C 0.115 3.885 4 H 0.023 0.977 5 C -0.552 4.552 6 H 0.084 0.916 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.251 5.251 14 C -0.085 4.085 15 C 0.038 3.962 16 H 0.121 0.879 17 C -0.166 4.166 18 C -0.186 4.186 19 C -0.028 4.028 20 H 0.137 0.863 21 C 0.001 3.999 22 N -0.325 5.325 23 C 0.411 3.589 24 O -0.473 6.473 25 O -0.276 6.276 26 C 0.098 3.902 27 C -0.239 4.239 28 C -0.197 4.197 29 C -0.239 4.239 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.103 0.897 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.085 0.915 46 H 0.107 0.893 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.085 0.915 50 H 0.106 0.894 51 H 0.085 0.915 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.723 9.189 12.890 16.833 hybrid contribution 0.756 0.517 -0.791 1.210 sum -4.967 9.706 12.099 16.287 Atomic orbital electron populations 1.22212 0.99805 0.99245 1.00082 1.21577 0.91377 0.99569 1.02448 1.19337 0.95257 0.90686 0.83176 0.97711 1.21298 0.91129 1.38383 1.04384 0.91573 1.24915 0.97946 0.95154 0.95855 1.69884 1.34653 1.38822 1.09273 0.86589 0.85712 0.78501 0.77154 1.20678 1.21390 1.19896 1.61947 1.01303 1.23249 1.38648 1.22948 0.92156 0.92141 1.01273 1.21940 0.96634 0.96468 0.81110 0.87888 1.22017 0.97412 0.99214 0.97971 1.22129 0.94591 0.99333 1.02505 1.22028 1.01253 0.88971 0.90559 0.86309 1.22199 0.78905 0.99423 0.99336 1.47507 1.10364 1.63859 1.10770 1.17908 0.83473 0.77180 0.80354 1.90838 1.14035 1.58893 1.83535 1.86327 1.42167 1.77360 1.21740 1.21987 0.91796 0.93219 0.83191 1.22502 0.99277 0.98946 1.03204 1.21841 0.99233 1.02953 0.95656 1.22503 1.02002 0.95684 1.03703 0.93256 0.95114 0.94103 0.94122 0.88719 0.92922 0.90965 0.91714 0.90911 0.92227 0.89749 0.92604 0.90713 0.91583 0.92215 0.91512 0.89326 0.91580 0.90433 0.91474 0.89355 0.91487 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 8.34 37.16 0.31 -2.70 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.04 1.05 -68.86 -0.07 4.97 16 4 H 0.01 0.13 7.08 -51.93 -0.37 -0.23 16 5 C -0.51 -12.74 7.65 -34.44 -0.26 -13.00 16 6 H 0.07 1.61 5.46 -52.49 -0.29 1.33 16 7 C 0.06 1.62 5.28 -17.82 -0.09 1.53 16 8 N -0.89 -23.84 11.29 55.43 0.63 -23.21 16 9 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 N -0.53 -10.35 4.51 -219.62 -0.99 -11.34 16 14 C 0.04 0.77 3.93 -3.75 -0.01 0.75 16 15 C 0.14 2.28 3.62 -66.67 -0.24 2.04 16 16 H 0.10 1.65 7.30 -51.93 -0.38 1.27 16 17 C -0.13 -1.98 5.90 -26.38 -0.16 -2.14 16 18 C -0.15 -2.48 5.43 -26.62 -0.14 -2.62 16 19 C 0.08 1.44 2.60 -67.35 -0.18 1.27 16 20 H 0.12 2.29 5.36 -51.93 -0.28 2.02 16 21 C 0.12 1.96 5.97 -2.99 -0.02 1.94 16 22 N -0.58 -9.52 2.82 -168.81 -0.48 -9.99 16 23 C 0.66 10.81 7.81 54.06 0.42 11.23 16 24 O -0.58 -10.28 11.53 -19.28 -0.22 -10.51 16 25 O -0.36 -5.35 9.31 -40.31 -0.38 -5.73 16 26 C 0.14 1.60 1.13 -90.62 -0.10 1.50 16 27 C -0.18 -2.11 8.37 37.16 0.31 -1.80 16 28 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 29 C -0.18 -2.05 8.37 37.16 0.31 -1.74 16 30 H 0.05 0.89 5.19 -51.93 -0.27 0.62 16 31 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.04 0.78 7.32 -51.93 -0.38 0.40 16 33 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 2.43 5.92 -51.93 -0.31 2.12 16 35 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.07 1.30 4.98 -51.93 -0.26 1.04 16 37 H 0.06 1.17 7.21 -51.93 -0.37 0.79 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.08 1.65 6.82 -51.93 -0.35 1.29 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.09 1.21 5.88 -51.93 -0.31 0.91 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 376.79 15.07 5.68 5.68 Total: -1.00 -27.00 376.79 -9.45 -36.45 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.92 Total: 5.90 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 0.26 Total: -2.37 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: -0.84 Total: -44.54 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.60 Total: -16.24 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -27.00 -9.45 -36.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.928 kcal (2) G-P(sol) polarization free energy of solvation -27.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds