Wall clock time and date at job start Tue Mar 31 2020 15:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47432 * 2 1 4 4 H 1.08990 * 109.47590 * 306.65789 * 3 2 1 5 5 C 1.50706 * 109.47207 * 186.65151 * 3 2 1 6 6 H 1.07997 * 120.00498 * 240.00513 * 5 3 2 7 7 C 1.37882 * 119.99466 * 60.00513 * 5 3 2 8 8 N 1.31513 * 119.99769 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99713 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47082 * 90.00264 * 9 7 5 11 11 H 1.48502 * 109.47028 * 210.00253 * 9 7 5 12 12 H 1.48498 * 109.47491 * 329.99878 * 9 7 5 13 13 N 1.46908 * 109.46851 * 66.65796 * 3 2 1 14 14 C 1.46656 * 110.99739 * 287.83953 * 13 3 2 15 15 C 1.53403 * 109.90139 * 233.51140 * 14 13 3 16 16 H 1.09003 * 110.88297 * 182.37592 * 15 14 13 17 17 C 1.53581 * 108.12848 * 60.61034 * 15 14 13 18 18 C 1.53091 * 109.00074 * 301.99012 * 17 15 14 19 19 C 1.46796 * 110.99755 * 162.20027 * 13 3 2 20 20 H 1.08994 * 109.63212 * 306.14590 * 19 13 3 21 21 C 1.53698 * 109.10751 * 185.47888 * 19 13 3 22 22 N 1.47753 * 106.38787 * 300.86162 * 21 19 13 23 23 C 1.34778 * 122.33171 * 180.17597 * 22 21 19 24 24 O 1.21511 * 119.99807 * 179.97438 * 23 22 21 25 25 O 1.34635 * 119.99955 * 359.97438 * 23 22 21 26 26 C 1.45202 * 116.99584 * 180.02562 * 25 23 22 27 27 C 1.53001 * 109.47624 * 59.99859 * 26 25 23 28 28 C 1.53003 * 109.47213 * 180.02562 * 26 25 23 29 29 C 1.53000 * 109.47140 * 299.99872 * 26 25 23 30 30 H 1.09001 * 109.46553 * 290.41935 * 1 2 3 31 31 H 1.08999 * 109.47398 * 170.41697 * 1 2 3 32 32 H 1.08995 * 109.46708 * 50.41427 * 1 2 3 33 33 H 1.08996 * 109.47094 * 120.00785 * 2 1 3 34 34 H 1.09003 * 109.47031 * 240.00427 * 2 1 3 35 35 H 0.97004 * 119.99554 * 180.02562 * 8 7 5 36 36 H 1.08997 * 109.40199 * 353.64094 * 14 13 3 37 37 H 1.09001 * 109.40160 * 113.47040 * 14 13 3 38 38 H 1.09003 * 109.54968 * 61.84497 * 17 15 14 39 39 H 1.08999 * 109.55389 * 182.03938 * 17 15 14 40 40 H 1.09006 * 109.43178 * 119.90182 * 18 17 15 41 41 H 1.09000 * 109.43236 * 239.80705 * 18 17 15 42 42 H 1.08992 * 110.06595 * 60.08041 * 21 19 13 43 43 H 1.09000 * 110.06096 * 181.64647 * 21 19 13 44 44 H 1.09000 * 109.46808 * 59.99523 * 27 26 25 45 45 H 1.08998 * 109.47276 * 179.97438 * 27 26 25 46 46 H 1.09007 * 109.46805 * 300.00268 * 27 26 25 47 47 H 1.08996 * 109.46914 * 59.99502 * 28 26 25 48 48 H 1.09000 * 109.47161 * 180.02562 * 28 26 25 49 49 H 1.09000 * 109.46641 * 300.00123 * 28 26 25 50 50 H 1.09001 * 109.47296 * 60.00253 * 29 26 25 51 51 H 1.08998 * 109.47060 * 180.02562 * 29 26 25 52 52 H 1.09002 * 109.46866 * 299.99812 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5828 1.9896 -0.8243 5 6 3.5381 1.4456 -0.1646 6 1 4.1644 1.8826 0.5990 7 6 4.1091 0.8904 -1.2902 8 7 3.3463 0.3587 -2.2202 9 14 5.9658 0.8949 -1.4946 10 1 6.5322 -0.3425 -0.9002 11 1 6.3046 0.9500 -2.9394 12 1 6.5367 2.0807 -0.8068 13 7 1.6859 2.0870 1.2717 14 6 0.2469 2.3622 1.3386 15 6 0.0130 3.8429 1.6641 16 1 -1.0517 4.0563 1.7590 17 6 0.6424 4.6837 0.5436 18 6 2.1324 4.3466 0.4444 19 6 2.4944 3.2920 1.4938 20 1 3.5524 3.0431 1.4131 21 6 2.1882 3.8527 2.8917 22 7 0.7408 4.1488 2.9143 23 6 0.1270 4.6625 3.9987 24 8 -1.0662 4.8902 3.9705 25 8 0.8360 4.9232 5.1131 26 6 0.1092 5.4750 6.2426 27 6 -0.9861 4.4967 6.6716 28 6 1.0744 5.7037 7.4076 29 6 -0.5263 6.8069 5.8387 30 1 -0.3632 0.3586 0.9631 31 1 -0.3634 -1.0133 -0.1711 32 1 -0.3632 0.6548 -0.7920 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.7480 -0.0323 -3.0119 36 1 -0.2119 2.1257 0.3786 37 1 -0.2037 1.7462 2.1168 38 1 0.1528 4.4549 -0.4030 39 1 0.5210 5.7430 0.7703 40 1 2.3508 3.9581 -0.5504 41 1 2.7205 5.2476 0.6190 42 1 2.4302 3.1114 3.6532 43 1 2.7594 4.7654 3.0618 44 1 -0.5333 3.5478 6.9594 45 1 -1.5313 4.9107 7.5198 46 1 -1.6736 4.3342 5.8415 47 1 1.8543 6.4009 7.1017 48 1 0.5287 6.1175 8.2556 49 1 1.5275 4.7551 7.6955 50 1 -1.2139 6.6444 5.0086 51 1 -1.0715 7.2213 6.6867 52 1 0.2540 7.5039 5.5331 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255180065.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:35 Heat of formation + Delta-G solvation = -75.011753 kcal Electronic energy + Delta-G solvation = -30526.245540 eV Core-core repulsion = 26718.712719 eV Total energy + Delta-G solvation = -3807.532820 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.25270 -41.07582 -38.10584 -36.89131 -35.18036 -34.20857 -33.62293 -32.71459 -31.50725 -29.31965 -28.31788 -28.24854 -26.89055 -25.25025 -24.27426 -23.56251 -22.85527 -21.51558 -20.75685 -19.29110 -18.52664 -17.86889 -17.71064 -17.52516 -16.98036 -16.77632 -16.27525 -15.98321 -15.43059 -15.22007 -14.89435 -14.63420 -14.41937 -14.20848 -13.95114 -13.81445 -13.61186 -13.60304 -13.32210 -13.09495 -13.06938 -12.99712 -12.85213 -12.81105 -12.74931 -12.69599 -12.51911 -12.42209 -12.25844 -12.23135 -11.92125 -11.61068 -11.56070 -11.35783 -11.33040 -11.13661 -10.79992 -10.57887 -10.37697 -9.67512 -8.71135 -8.04727 -6.15444 1.12550 1.45225 1.47909 1.55284 1.80622 2.46371 2.85789 3.21851 3.35502 3.69213 3.80428 3.82622 3.86231 3.92443 3.99810 4.01263 4.30647 4.41160 4.48575 4.51519 4.58828 4.62204 4.63834 4.65511 4.70894 4.76901 4.80459 4.81536 4.82622 4.87519 4.91855 4.94752 5.00224 5.08905 5.13383 5.15111 5.23054 5.32535 5.32831 5.34919 5.40809 5.49539 5.51951 5.56758 5.73012 5.80490 5.91669 6.35365 6.39577 6.51276 6.82575 7.01474 7.32329 7.53613 9.00143 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.003599 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.478489 B = 7777.247747 C = 8290.143587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 C 0.232 3.768 4 H -0.024 1.024 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 0.949 3.051 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.264 1.264 13 N -0.533 5.533 14 C 0.048 3.952 15 C 0.146 3.854 16 H 0.108 0.892 17 C -0.120 4.120 18 C -0.140 4.140 19 C 0.079 3.921 20 H 0.103 0.897 21 C 0.135 3.865 22 N -0.588 5.588 23 C 0.655 3.345 24 O -0.596 6.596 25 O -0.367 6.367 26 C 0.122 3.878 27 C -0.178 4.178 28 C -0.134 4.134 29 C -0.177 4.177 30 H 0.063 0.937 31 H 0.043 0.957 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.258 0.742 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.092 0.908 46 H 0.060 0.940 47 H 0.068 0.932 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.092 0.908 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.415 11.037 14.774 19.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.147 4.147 3 C 0.126 3.874 4 H -0.006 1.006 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.556 5.556 9 Si 0.776 3.224 10 H -0.208 1.208 11 H -0.217 1.217 12 H -0.189 1.189 13 N -0.257 5.257 14 C -0.081 4.081 15 C 0.044 3.956 16 H 0.126 0.874 17 C -0.159 4.159 18 C -0.179 4.179 19 C -0.030 4.030 20 H 0.121 0.879 21 C 0.013 3.987 22 N -0.329 5.329 23 C 0.410 3.590 24 O -0.488 6.488 25 O -0.281 6.281 26 C 0.085 3.915 27 C -0.235 4.235 28 C -0.191 4.191 29 C -0.234 4.234 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.048 0.952 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.105 0.895 44 H 0.076 0.924 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.122 0.878 49 H 0.085 0.915 50 H 0.079 0.921 51 H 0.111 0.889 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.656 10.730 15.072 19.346 hybrid contribution 0.700 0.059 -1.385 1.553 sum -4.957 10.789 13.686 18.119 Atomic orbital electron populations 1.22069 0.97069 1.00171 1.00821 1.21433 0.93858 0.99080 1.00320 1.19045 0.94091 0.90605 0.83668 1.00623 1.21633 0.92410 1.37505 1.04187 0.91321 1.25597 1.01572 0.95183 0.95845 1.70019 1.36052 1.39883 1.09677 0.85692 0.81403 0.78574 0.76769 1.20761 1.21682 1.18856 1.61857 1.02747 1.24568 1.36548 1.22871 0.90742 0.93472 1.01015 1.21841 0.97011 0.95293 0.81463 0.87427 1.21955 0.96178 0.99901 0.97842 1.22017 0.95988 0.99585 1.00318 1.21997 1.00054 0.88639 0.92278 0.87917 1.22093 0.79009 1.00132 0.97502 1.47513 1.10401 1.64045 1.10897 1.17972 0.83325 0.76971 0.80691 1.90842 1.14704 1.59401 1.83867 1.86339 1.42620 1.77336 1.21827 1.22434 0.92684 0.93288 0.83058 1.22456 0.98875 0.99148 1.03050 1.21869 0.98962 1.03225 0.95052 1.22447 1.01654 0.95555 1.03726 0.91832 0.93796 0.94268 0.95175 0.91740 0.93250 0.91350 0.91818 0.90815 0.90755 0.92894 0.90739 0.90949 0.89513 0.92435 0.88881 0.92123 0.91248 0.87777 0.91533 0.92086 0.88946 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.54 8.34 71.98 0.60 -4.94 16 2 C -0.11 -5.04 5.45 30.59 0.17 -4.88 16 3 C 0.23 10.85 1.05 44.17 0.05 10.89 16 4 H -0.02 -1.23 7.08 -2.39 -0.02 -1.25 16 5 C -0.52 -26.21 7.65 25.60 0.20 -26.01 16 6 H 0.07 3.38 5.46 -2.91 -0.02 3.36 16 7 C 0.02 0.89 5.28 84.66 0.45 1.33 16 8 N -0.92 -50.62 11.29 21.45 0.24 -50.37 16 9 Si 0.95 41.75 29.54 68.60 2.03 43.77 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 13 N -0.53 -20.98 4.51 -848.76 -3.82 -24.80 16 14 C 0.05 1.66 3.93 86.49 0.34 2.00 16 15 C 0.15 4.58 3.62 45.06 0.16 4.74 16 16 H 0.11 3.32 7.30 -2.39 -0.02 3.30 16 17 C -0.12 -3.60 5.90 30.82 0.18 -3.42 16 18 C -0.14 -4.65 5.43 30.66 0.17 -4.49 16 19 C 0.08 2.78 2.60 45.21 0.12 2.90 16 20 H 0.10 3.96 5.36 -2.39 -0.01 3.94 16 21 C 0.13 4.05 5.97 86.37 0.52 4.57 16 22 N -0.59 -18.29 2.82 -918.41 -2.59 -20.88 16 23 C 0.65 20.68 7.81 129.79 1.01 21.70 16 24 O -0.60 -20.53 11.53 19.80 0.23 -20.30 16 25 O -0.37 -10.20 9.31 -55.44 -0.52 -10.72 16 26 C 0.12 2.60 1.13 -10.79 -0.01 2.59 16 27 C -0.18 -3.79 8.37 71.98 0.60 -3.19 16 28 C -0.13 -1.97 8.85 71.98 0.64 -1.33 16 29 C -0.18 -3.58 8.37 71.98 0.60 -2.98 16 30 H 0.06 2.24 5.19 -2.39 -0.01 2.23 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 1.50 7.32 -2.39 -0.02 1.48 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 3.42 5.92 -2.39 -0.01 3.40 16 35 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 36 H 0.07 2.45 4.98 -2.39 -0.01 2.44 16 37 H 0.06 2.24 7.21 -2.39 -0.02 2.22 16 38 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 2.10 6.82 -2.38 -0.02 2.09 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.09 2.27 8.14 -2.39 -0.02 2.26 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.06 1.66 5.88 -2.38 -0.01 1.64 16 47 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 49 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 50 H 0.06 1.60 5.88 -2.39 -0.01 1.59 16 51 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -59.01 376.79 2.25 -56.76 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: 0.90 Total: 27.05 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 5.79 Total: -0.51 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -6.17 Total: -96.06 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -0.29 Total: -31.01 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 2.03 Total: 43.77 kcal Total: -59.01 2.25 -56.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255180065.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.253 kcal (2) G-P(sol) polarization free energy of solvation -59.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds