Wall clock time and date at job start Tue Mar 31 2020 15:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47634 * 2 1 4 4 H 1.09007 * 109.46823 * 54.99752 * 3 2 1 5 5 C 1.52996 * 109.47466 * 174.99841 * 3 2 1 6 6 N 1.46498 * 109.46831 * 295.00032 * 3 2 1 7 7 C 1.46867 * 124.34893 * 119.99772 * 6 3 2 8 8 C 1.54049 * 105.36612 * 163.37763 * 7 6 3 9 9 C 1.54120 * 102.26709 * 24.93625 * 8 7 6 10 10 C 1.34470 * 124.35352 * 299.99563 * 6 3 2 11 11 O 1.21278 * 124.93890 * 0.41744 * 10 6 3 12 12 C 1.50787 * 110.97981 * 266.43934 * 8 7 6 13 13 O 1.44082 * 107.73570 * 328.26281 * 12 8 7 14 14 C 1.36445 * 117.29161 * 280.29907 * 13 12 8 15 15 C 1.54258 * 111.73112 * 61.40029 * 14 13 12 16 16 N 1.44822 * 109.07284 * 283.42036 * 15 14 13 17 17 C 1.46897 * 111.00045 * 219.61468 * 16 15 14 18 18 C 1.52997 * 109.47325 * 293.95286 * 17 16 15 19 19 C 1.50704 * 109.47011 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00212 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99563 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00013 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00312 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.46885 * 90.00086 * 23 21 19 25 25 H 1.48509 * 109.46914 * 210.00063 * 23 21 19 26 26 H 1.48500 * 109.47014 * 329.99919 * 23 21 19 27 27 C 1.48054 * 113.85035 * 93.49896 * 16 15 14 28 28 H 1.09002 * 109.47010 * 300.00253 * 1 2 3 29 29 H 1.09001 * 109.46844 * 60.00097 * 1 2 3 30 30 H 1.08997 * 109.47432 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47338 * 239.99567 * 2 1 3 32 32 H 1.09006 * 109.47148 * 120.00283 * 2 1 3 33 33 H 1.09006 * 109.47224 * 299.99936 * 5 3 2 34 34 H 1.08991 * 109.46991 * 59.99770 * 5 3 2 35 35 H 1.09000 * 109.47444 * 180.02562 * 5 3 2 36 36 H 1.08998 * 110.26758 * 44.40537 * 7 6 3 37 37 H 1.08994 * 110.34352 * 282.39478 * 7 6 3 38 38 H 1.09000 * 110.50930 * 94.33327 * 9 8 7 39 39 H 1.09008 * 110.50032 * 217.02592 * 9 8 7 40 40 H 1.08999 * 109.81016 * 208.70004 * 12 8 7 41 41 H 1.09004 * 109.80249 * 87.81695 * 12 8 7 42 42 H 1.08997 * 109.02515 * 181.98021 * 14 13 12 43 43 H 1.08997 * 109.02928 * 300.89627 * 14 13 12 44 44 H 1.09002 * 109.53999 * 43.30067 * 15 14 13 45 45 H 1.09001 * 109.54000 * 163.45873 * 15 14 13 46 46 H 1.09003 * 109.46995 * 53.95472 * 17 16 15 47 47 H 1.09002 * 109.47141 * 173.95024 * 17 16 15 48 48 H 1.09003 * 109.47236 * 300.00038 * 18 17 16 49 49 H 1.09003 * 109.47245 * 60.00345 * 18 17 16 50 50 H 0.97001 * 120.00218 * 180.02562 * 22 21 19 51 51 H 1.08994 * 108.97913 * 78.98345 * 27 16 15 52 52 H 1.09004 * 108.97817 * 197.77426 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4442 0.1258 6 7 1.6525 2.0974 -1.2518 7 6 0.8071 3.2956 -1.3330 8 6 1.0221 3.8514 -2.7535 9 6 1.4531 2.5949 -3.5350 10 6 2.0251 1.6788 -2.4742 11 8 2.7186 0.7086 -2.6947 12 6 2.1092 4.8963 -2.7656 13 8 2.0820 5.5727 -1.4937 14 6 1.1339 6.5381 -1.3187 15 6 -0.2934 5.9654 -1.4385 16 7 -0.6003 5.7481 -2.8370 17 6 -1.9897 6.1204 -3.1351 18 6 -2.9404 5.1717 -2.4022 19 6 -4.3658 5.5541 -2.7075 20 1 -4.5729 6.3903 -3.3588 21 6 -5.4054 4.8368 -2.1546 22 7 -6.6493 5.1701 -2.4214 23 14 -5.0471 3.3917 -1.0264 24 1 -4.9585 3.8693 0.3768 25 1 -6.1391 2.3917 -1.1410 26 1 -3.7591 2.7652 -1.4184 27 6 -0.3059 4.3758 -3.3083 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8532 0.9569 1.0572 34 1 3.9994 0.9052 -0.7160 35 1 3.9282 2.4719 0.1262 36 1 1.1192 4.0289 -0.5894 37 1 -0.2399 3.0312 -1.1854 38 1 0.5925 2.1307 -4.0166 39 1 2.2149 2.8469 -4.2729 40 1 1.9258 5.6109 -3.5680 41 1 3.0785 4.4190 -2.9095 42 1 1.2570 6.9821 -0.3309 43 1 1.2700 7.3112 -2.0750 44 1 -0.3527 5.0190 -0.9009 45 1 -1.0065 6.6715 -1.0130 46 1 -2.1707 7.1432 -2.8045 47 1 -2.1624 6.0498 -4.2090 48 1 -2.7594 4.1489 -2.7328 49 1 -2.7678 5.2424 -1.3282 50 1 -7.3808 4.6658 -2.0320 51 1 -1.1098 3.7118 -2.9907 52 1 -0.2577 4.3777 -4.3973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274038364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:37 Heat of formation + Delta-G solvation = -69.365851 kcal Electronic energy + Delta-G solvation = -30635.206502 eV Core-core repulsion = 26827.918506 eV Total energy + Delta-G solvation = -3807.287996 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48010 -39.39607 -36.83807 -36.46276 -35.83096 -32.98437 -32.14316 -30.51794 -30.16071 -28.60253 -27.77537 -26.68474 -25.49998 -24.00270 -23.59252 -22.15531 -21.77495 -20.08589 -19.21634 -18.94762 -17.16963 -17.11798 -16.81531 -16.12742 -16.06064 -15.62409 -15.15968 -14.70224 -14.36553 -14.19028 -14.10656 -13.86294 -13.56647 -13.46310 -13.44247 -13.17523 -12.90725 -12.69544 -12.65202 -12.57650 -12.24099 -11.97597 -11.77518 -11.63917 -11.44119 -11.30964 -11.14288 -11.09734 -11.05833 -10.87769 -10.82224 -10.46312 -10.41641 -10.00933 -9.90301 -9.56926 -9.49008 -9.32829 -8.69124 -8.64813 -7.76805 -6.15597 -4.14431 2.57894 2.92651 3.18890 3.27624 3.28166 3.70458 4.07905 4.17107 4.33033 4.38611 4.56687 4.67882 4.82828 4.88257 4.97978 5.01514 5.17404 5.23227 5.25952 5.28761 5.37288 5.42118 5.47335 5.50807 5.51724 5.56841 5.59615 5.62343 5.69282 5.72228 5.79382 5.85922 5.89897 5.97210 5.97771 6.02120 6.07771 6.10143 6.12592 6.17727 6.32719 6.57506 6.60667 7.01360 7.07941 7.12822 7.32342 7.46473 7.58898 7.72936 8.18044 8.41036 8.89210 9.46545 10.97716 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.004740 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.337938 B = 5906.023053 C = 7247.383845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.140 4.140 3 C 0.156 3.844 4 H 0.086 0.914 5 C -0.165 4.165 6 N -0.607 5.607 7 C 0.104 3.896 8 C -0.102 4.102 9 C -0.144 4.144 10 C 0.521 3.479 11 O -0.537 6.537 12 C 0.091 3.909 13 O -0.380 6.380 14 C 0.075 3.925 15 C 0.008 3.992 16 N -0.553 5.553 17 C 0.071 3.929 18 C -0.044 4.044 19 C -0.520 4.520 20 H 0.073 0.927 21 C 0.070 3.930 22 N -0.900 5.900 23 Si 0.878 3.122 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.269 1.269 27 C 0.065 3.935 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.074 0.926 41 H 0.088 0.912 42 H 0.090 0.910 43 H 0.046 0.954 44 H 0.053 0.947 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.017 0.983 49 H 0.009 0.991 50 H 0.264 0.736 51 H 0.056 0.944 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.437 -3.716 3.782 20.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.178 4.178 3 C 0.054 3.946 4 H 0.104 0.896 5 C -0.223 4.223 6 N -0.340 5.340 7 C -0.018 4.018 8 C -0.104 4.104 9 C -0.185 4.185 10 C 0.309 3.691 11 O -0.415 6.415 12 C 0.015 3.985 13 O -0.297 6.297 14 C -0.004 4.004 15 C -0.121 4.121 16 N -0.277 5.277 17 C -0.055 4.055 18 C -0.082 4.082 19 C -0.559 4.559 20 H 0.092 0.908 21 C -0.132 4.132 22 N -0.539 5.539 23 Si 0.706 3.294 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.194 1.194 27 C -0.063 4.063 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.065 0.935 44 H 0.071 0.929 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.087 0.913 48 H 0.035 0.965 49 H 0.028 0.972 50 H 0.074 0.926 51 H 0.074 0.926 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.041 -4.043 3.673 20.772 hybrid contribution -1.121 -1.197 0.908 1.875 sum 18.920 -5.240 4.581 20.159 Atomic orbital electron populations 1.21739 0.95487 1.01631 1.01916 1.21950 0.96368 0.96192 1.03297 1.20978 0.95182 0.93194 0.85230 0.89612 1.22152 0.94970 1.02526 1.02695 1.48457 1.50446 1.29179 1.05962 1.22677 0.94483 0.86403 0.98271 1.21716 0.97796 0.95676 0.95179 1.22389 1.03304 0.94890 0.97872 1.20801 0.79353 0.84638 0.84346 1.90669 1.38718 1.28143 1.83942 1.22327 0.96735 0.93174 0.86275 1.86511 1.54794 1.53163 1.35281 1.21830 0.87408 0.90075 1.01096 1.22932 0.97918 1.01439 0.89859 1.61222 1.25302 1.23252 1.17914 1.22187 0.83360 0.99388 1.00580 1.20155 0.96712 0.95858 0.95505 1.21014 0.88408 1.16320 1.30139 0.90850 1.25019 0.95006 0.97086 0.96104 1.69904 0.98543 1.40735 1.44670 0.86817 0.78153 0.83005 0.81473 1.20327 1.21275 1.19361 1.22468 0.93609 0.89972 1.00226 0.92845 0.92756 0.92731 0.90298 0.91095 0.91745 0.91130 0.92226 0.87910 0.91326 0.87418 0.87774 0.90737 0.89420 0.89251 0.93538 0.92874 0.90095 0.91124 0.91295 0.96520 0.97248 0.92634 0.92642 0.90204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.80 37.16 0.36 -1.36 16 2 C -0.14 -1.53 5.36 -26.74 -0.14 -1.68 16 3 C 0.16 1.70 2.87 -67.93 -0.19 1.51 16 4 H 0.09 0.85 8.07 -51.93 -0.42 0.43 16 5 C -0.17 -1.69 9.20 37.16 0.34 -1.35 16 6 N -0.61 -7.31 2.29 -164.98 -0.38 -7.69 16 7 C 0.10 1.24 4.44 -3.29 -0.01 1.23 16 8 C -0.10 -1.15 0.59 -154.39 -0.09 -1.24 16 9 C -0.14 -1.57 5.74 -26.96 -0.15 -1.73 16 10 C 0.52 6.92 7.40 -10.79 -0.08 6.84 16 11 O -0.54 -8.64 15.07 5.56 0.08 -8.55 16 12 C 0.09 0.96 5.79 36.05 0.21 1.17 16 13 O -0.38 -4.40 8.31 -21.17 -0.18 -4.58 16 14 C 0.07 0.84 6.39 37.82 0.24 1.08 16 15 C 0.01 0.10 4.33 -4.28 -0.02 0.08 16 16 N -0.55 -8.00 4.17 -234.41 -0.98 -8.97 16 17 C 0.07 1.28 5.07 -3.83 -0.02 1.26 16 18 C -0.04 -0.96 3.55 -27.88 -0.10 -1.05 16 19 C -0.52 -14.10 9.66 -34.44 -0.33 -14.43 16 20 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 21 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 23 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 27 C 0.06 0.86 4.18 -3.09 -0.01 0.85 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.71 7.75 -51.93 -0.40 0.31 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.08 1.03 6.63 -51.93 -0.34 0.69 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.86 6.80 -51.93 -0.35 0.51 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.10 1.24 5.14 -51.93 -0.27 0.97 16 37 H 0.07 0.93 7.13 -51.93 -0.37 0.56 16 38 H 0.11 1.15 7.82 -51.93 -0.41 0.74 16 39 H 0.10 0.97 7.79 -51.92 -0.40 0.57 16 40 H 0.07 0.79 7.70 -51.93 -0.40 0.39 16 41 H 0.09 0.87 7.73 -51.93 -0.40 0.46 16 42 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.53 8.13 -51.93 -0.42 0.11 16 44 H 0.05 0.73 4.54 -51.93 -0.24 0.50 16 45 H 0.08 1.14 7.33 -51.93 -0.38 0.76 16 46 H 0.07 1.28 7.91 -51.93 -0.41 0.87 16 47 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 48 H 0.02 0.37 5.24 -51.93 -0.27 0.10 16 49 H 0.01 0.20 6.70 -51.93 -0.35 -0.14 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.06 0.87 5.18 -51.93 -0.27 0.60 16 52 H 0.08 1.00 8.05 -51.93 -0.42 0.58 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -30.61 380.77 -8.77 -39.39 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -9.07 Total: 1.46 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -0.10 Total: -6.96 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: -0.58 Total: -42.95 kcal Atomic # 8 Polarization: -13.04 SS G_CDS: -0.09 Total: -13.13 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.61 -8.77 -39.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.980 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds