Wall clock time and date at job start Tue Mar 31 2020 15:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47634 * 2 1 4 4 H 1.09007 * 109.46823 * 54.99752 * 3 2 1 5 5 C 1.52996 * 109.47466 * 174.99841 * 3 2 1 6 6 N 1.46498 * 109.46831 * 295.00032 * 3 2 1 7 7 C 1.46867 * 124.34893 * 119.99772 * 6 3 2 8 8 C 1.54049 * 105.36612 * 163.37763 * 7 6 3 9 9 C 1.54120 * 102.26709 * 24.93625 * 8 7 6 10 10 C 1.34470 * 124.35352 * 299.99563 * 6 3 2 11 11 O 1.21278 * 124.93890 * 0.41744 * 10 6 3 12 12 C 1.50787 * 110.97981 * 266.43934 * 8 7 6 13 13 O 1.44082 * 107.73570 * 328.26281 * 12 8 7 14 14 C 1.36445 * 117.29161 * 280.29907 * 13 12 8 15 15 C 1.54258 * 111.73112 * 61.40029 * 14 13 12 16 16 N 1.44822 * 109.07284 * 283.42036 * 15 14 13 17 17 C 1.46897 * 111.00045 * 219.61468 * 16 15 14 18 18 C 1.52997 * 109.47325 * 293.95286 * 17 16 15 19 19 C 1.50704 * 109.47011 * 179.97438 * 18 17 16 20 20 H 1.07997 * 120.00212 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99563 * 180.02562 * 19 18 17 22 22 N 1.31518 * 120.00013 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00312 * 0.02562 * 21 19 18 24 24 H 1.48493 * 109.46885 * 90.00086 * 23 21 19 25 25 H 1.48509 * 109.46914 * 210.00063 * 23 21 19 26 26 H 1.48500 * 109.47014 * 329.99919 * 23 21 19 27 27 C 1.48054 * 113.85035 * 93.49896 * 16 15 14 28 28 H 1.09002 * 109.47010 * 300.00253 * 1 2 3 29 29 H 1.09001 * 109.46844 * 60.00097 * 1 2 3 30 30 H 1.08997 * 109.47432 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47338 * 239.99567 * 2 1 3 32 32 H 1.09006 * 109.47148 * 120.00283 * 2 1 3 33 33 H 1.09006 * 109.47224 * 299.99936 * 5 3 2 34 34 H 1.08991 * 109.46991 * 59.99770 * 5 3 2 35 35 H 1.09000 * 109.47444 * 180.02562 * 5 3 2 36 36 H 1.08998 * 110.26758 * 44.40537 * 7 6 3 37 37 H 1.08994 * 110.34352 * 282.39478 * 7 6 3 38 38 H 1.09000 * 110.50930 * 94.33327 * 9 8 7 39 39 H 1.09008 * 110.50032 * 217.02592 * 9 8 7 40 40 H 1.08999 * 109.81016 * 208.70004 * 12 8 7 41 41 H 1.09004 * 109.80249 * 87.81695 * 12 8 7 42 42 H 1.08997 * 109.02515 * 181.98021 * 14 13 12 43 43 H 1.08997 * 109.02928 * 300.89627 * 14 13 12 44 44 H 1.09002 * 109.53999 * 43.30067 * 15 14 13 45 45 H 1.09001 * 109.54000 * 163.45873 * 15 14 13 46 46 H 1.09003 * 109.46995 * 53.95472 * 17 16 15 47 47 H 1.09002 * 109.47141 * 173.95024 * 17 16 15 48 48 H 1.09003 * 109.47236 * 300.00038 * 18 17 16 49 49 H 1.09003 * 109.47245 * 60.00345 * 18 17 16 50 50 H 0.97001 * 120.00218 * 180.02562 * 22 21 19 51 51 H 1.08994 * 108.97913 * 78.98345 * 27 16 15 52 52 H 1.09004 * 108.97817 * 197.77426 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4442 0.1258 6 7 1.6525 2.0974 -1.2518 7 6 0.8071 3.2956 -1.3330 8 6 1.0221 3.8514 -2.7535 9 6 1.4531 2.5949 -3.5350 10 6 2.0251 1.6788 -2.4742 11 8 2.7186 0.7086 -2.6947 12 6 2.1092 4.8963 -2.7656 13 8 2.0820 5.5727 -1.4937 14 6 1.1339 6.5381 -1.3187 15 6 -0.2934 5.9654 -1.4385 16 7 -0.6003 5.7481 -2.8370 17 6 -1.9897 6.1204 -3.1351 18 6 -2.9404 5.1717 -2.4022 19 6 -4.3658 5.5541 -2.7075 20 1 -4.5729 6.3903 -3.3588 21 6 -5.4054 4.8368 -2.1546 22 7 -6.6493 5.1701 -2.4214 23 14 -5.0471 3.3917 -1.0264 24 1 -4.9585 3.8693 0.3768 25 1 -6.1391 2.3917 -1.1410 26 1 -3.7591 2.7652 -1.4184 27 6 -0.3059 4.3758 -3.3083 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.8532 0.9569 1.0572 34 1 3.9994 0.9052 -0.7160 35 1 3.9282 2.4719 0.1262 36 1 1.1192 4.0289 -0.5894 37 1 -0.2399 3.0312 -1.1854 38 1 0.5925 2.1307 -4.0166 39 1 2.2149 2.8469 -4.2729 40 1 1.9258 5.6109 -3.5680 41 1 3.0785 4.4190 -2.9095 42 1 1.2570 6.9821 -0.3309 43 1 1.2700 7.3112 -2.0750 44 1 -0.3527 5.0190 -0.9009 45 1 -1.0065 6.6715 -1.0130 46 1 -2.1707 7.1432 -2.8045 47 1 -2.1624 6.0498 -4.2090 48 1 -2.7594 4.1489 -2.7328 49 1 -2.7678 5.2424 -1.3282 50 1 -7.3808 4.6658 -2.0320 51 1 -1.1098 3.7118 -2.9907 52 1 -0.2577 4.3777 -4.3973 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274038364.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:36 Heat of formation + Delta-G solvation = -88.192054 kcal Electronic energy + Delta-G solvation = -30636.022867 eV Core-core repulsion = 26827.918506 eV Total energy + Delta-G solvation = -3808.104361 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45717 -40.40838 -38.00224 -37.50299 -36.80190 -34.96874 -33.12452 -32.13211 -31.05728 -29.64375 -28.96702 -27.67261 -26.72602 -25.25710 -24.60228 -23.33801 -22.96290 -21.30674 -20.33667 -19.91479 -19.08820 -18.11928 -17.79829 -17.15415 -17.03549 -16.68509 -16.45995 -16.09331 -15.60689 -15.34591 -15.14954 -15.05214 -14.77817 -14.72335 -14.50209 -14.34065 -14.14524 -13.86584 -13.78652 -13.61844 -13.43444 -13.09119 -12.88969 -12.83625 -12.77796 -12.36262 -12.27368 -12.18491 -12.09282 -12.00552 -11.94799 -11.81739 -11.71654 -11.57166 -11.45123 -11.24017 -10.80421 -10.59864 -10.41761 -9.66780 -9.03939 -8.33000 -6.36404 1.27930 1.30409 1.39882 1.56868 2.00689 2.29365 2.78602 2.97721 3.02458 3.22242 3.44915 3.65158 3.77422 3.90988 4.02340 4.04193 4.11576 4.19934 4.29111 4.38469 4.41257 4.47548 4.52072 4.57520 4.61122 4.63905 4.66718 4.68849 4.72310 4.73690 4.77271 4.84023 4.87815 4.93363 4.94986 5.00058 5.01000 5.08798 5.13540 5.17110 5.25008 5.28180 5.38310 5.41776 5.57050 5.69447 6.04356 6.16394 6.27408 6.33432 6.64044 6.73318 7.18200 7.28160 8.83598 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.004740 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.337938 B = 5906.023053 C = 7247.383845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.134 4.134 3 C 0.148 3.852 4 H 0.101 0.899 5 C -0.157 4.157 6 N -0.603 5.603 7 C 0.108 3.892 8 C -0.091 4.091 9 C -0.139 4.139 10 C 0.514 3.486 11 O -0.569 6.569 12 C 0.092 3.908 13 O -0.383 6.383 14 C 0.083 3.917 15 C 0.003 3.997 16 N -0.543 5.543 17 C 0.084 3.916 18 C -0.034 4.034 19 C -0.526 4.526 20 H 0.037 0.963 21 C 0.010 3.990 22 N -0.949 5.949 23 Si 0.943 3.057 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.251 1.251 27 C 0.066 3.934 28 H 0.062 0.938 29 H 0.033 0.967 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.108 0.892 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.124 0.876 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.018 0.982 49 H 0.013 0.987 50 H 0.265 0.735 51 H 0.034 0.966 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.679 -4.155 5.103 22.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.172 4.172 3 C 0.046 3.954 4 H 0.119 0.881 5 C -0.215 4.215 6 N -0.336 5.336 7 C -0.015 4.015 8 C -0.092 4.092 9 C -0.179 4.179 10 C 0.303 3.697 11 O -0.449 6.449 12 C 0.017 3.983 13 O -0.301 6.301 14 C 0.005 3.995 15 C -0.126 4.126 16 N -0.266 5.266 17 C -0.044 4.044 18 C -0.073 4.073 19 C -0.565 4.565 20 H 0.055 0.945 21 C -0.188 4.188 22 N -0.590 5.590 23 Si 0.767 3.233 24 H -0.192 1.192 25 H -0.213 1.213 26 H -0.175 1.175 27 C -0.062 4.062 28 H 0.081 0.919 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.128 0.872 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.127 0.873 43 H 0.066 0.934 44 H 0.069 0.931 45 H 0.091 0.909 46 H 0.085 0.915 47 H 0.081 0.919 48 H 0.036 0.964 49 H 0.032 0.968 50 H 0.074 0.926 51 H 0.052 0.948 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 22.309 -4.465 5.006 23.295 hybrid contribution -1.849 -1.013 0.469 2.160 sum 20.460 -5.478 5.475 21.877 Atomic orbital electron populations 1.21722 0.95828 1.01760 1.01267 1.21897 0.95947 0.96303 1.03091 1.21190 0.95812 0.93182 0.85174 0.88113 1.22071 0.94173 1.02444 1.02778 1.48551 1.49827 1.29001 1.06222 1.22613 0.93636 0.86397 0.98806 1.21592 0.96949 0.95950 0.94692 1.22405 1.03851 0.94026 0.97631 1.21146 0.78954 0.84444 0.85130 1.90655 1.40269 1.29572 1.84453 1.22392 0.96881 0.92927 0.86136 1.86523 1.54609 1.53227 1.35709 1.21790 0.85654 0.89760 1.02324 1.23063 0.99393 1.01314 0.88837 1.61270 1.22378 1.24026 1.18904 1.21919 0.84580 0.98211 0.99652 1.20060 0.94396 0.96754 0.96112 1.21399 0.91309 1.14949 1.28843 0.94510 1.25922 0.94676 1.00213 0.97956 1.70058 0.99758 1.42577 1.46582 0.85768 0.78581 0.79332 0.79595 1.19188 1.21315 1.17490 1.22492 0.94016 0.88706 1.00957 0.91918 0.94826 0.92302 0.92724 0.89018 0.89676 0.93382 0.92116 0.87434 0.92800 0.87171 0.85788 0.90284 0.88197 0.87265 0.93434 0.93064 0.90912 0.91519 0.91853 0.96404 0.96836 0.92562 0.94806 0.89195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.80 71.98 0.71 -2.47 16 2 C -0.13 -2.73 5.36 30.59 0.16 -2.57 16 3 C 0.15 2.92 2.87 44.99 0.13 3.05 16 4 H 0.10 1.70 8.07 -2.38 -0.02 1.68 16 5 C -0.16 -2.88 9.20 71.98 0.66 -2.22 16 6 N -0.60 -13.54 2.29 -794.43 -1.82 -15.36 16 7 C 0.11 2.36 4.44 86.66 0.38 2.75 16 8 C -0.09 -1.84 0.59 -52.11 -0.03 -1.87 16 9 C -0.14 -2.76 5.74 30.45 0.17 -2.58 16 10 C 0.51 13.02 7.40 87.92 0.65 13.67 16 11 O -0.57 -18.02 15.07 -3.02 -0.05 -18.07 16 12 C 0.09 1.68 5.79 71.26 0.41 2.10 16 13 O -0.38 -7.65 8.31 -98.67 -0.82 -8.47 16 14 C 0.08 1.62 6.39 72.41 0.46 2.08 16 15 C 0.00 0.07 4.33 87.12 0.38 0.45 16 16 N -0.54 -14.76 4.17 -895.55 -3.73 -18.49 16 17 C 0.08 2.95 5.07 86.30 0.44 3.39 16 18 C -0.03 -1.49 3.55 29.85 0.11 -1.38 16 19 C -0.53 -29.04 9.66 25.60 0.25 -28.79 16 20 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 21 C 0.01 0.54 5.47 84.65 0.46 1.00 16 22 N -0.95 -58.48 13.96 21.45 0.30 -58.18 16 23 Si 0.94 43.35 27.47 68.60 1.88 45.23 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 25 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 26 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 27 C 0.07 1.63 4.18 86.14 0.36 1.99 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.03 0.84 7.75 -2.39 -0.02 0.82 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 1.40 6.63 -2.39 -0.02 1.39 16 32 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.05 1.12 6.80 -2.39 -0.02 1.10 16 35 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.11 2.30 5.14 -2.39 -0.01 2.28 16 37 H 0.05 1.37 7.13 -2.39 -0.02 1.35 16 38 H 0.11 2.17 7.82 -2.39 -0.02 2.15 16 39 H 0.12 1.98 7.79 -2.38 -0.02 1.97 16 40 H 0.08 1.42 7.70 -2.39 -0.02 1.40 16 41 H 0.10 1.64 7.73 -2.39 -0.02 1.62 16 42 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.05 0.95 8.13 -2.39 -0.02 0.93 16 44 H 0.05 1.29 4.54 -2.39 -0.01 1.28 16 45 H 0.07 1.93 7.33 -2.39 -0.02 1.91 16 46 H 0.07 2.39 7.91 -2.39 -0.02 2.37 16 47 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 48 H 0.02 0.77 5.24 -2.39 -0.01 0.76 16 49 H 0.01 0.57 6.70 -2.39 -0.02 0.55 16 50 H 0.27 15.33 8.31 -92.71 -0.77 14.55 16 51 H 0.03 1.01 5.18 -2.39 -0.01 1.00 16 52 H 0.09 2.06 8.05 -2.39 -0.02 2.05 16 Total: -1.00 -67.19 380.77 2.31 -64.88 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.84 Total: 19.86 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: 5.71 Total: -11.40 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -5.25 Total: -92.02 kcal Atomic # 8 Polarization: -25.68 SS G_CDS: -0.87 Total: -26.54 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Total: -67.19 2.31 -64.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274038364.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.315 kcal (2) G-P(sol) polarization free energy of solvation -67.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds