Wall clock time and date at job start Tue Mar 31 2020 15:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.53009 * 109.47020 * 185.00095 * 3 2 1 6 6 N 1.46501 * 109.47174 * 65.00624 * 3 2 1 7 7 C 1.46207 * 118.77225 * 239.73098 * 6 3 2 8 8 C 1.52608 * 109.84574 * 162.27185 * 7 6 3 9 9 C 1.53782 * 110.54266 * 286.08181 * 8 7 6 10 10 C 1.54500 * 104.88323 * 240.71090 * 9 8 7 11 11 N 1.48603 * 104.61016 * 23.77976 * 10 9 8 12 12 C 1.46904 * 111.00400 * 201.21851 * 11 10 9 13 13 C 1.53006 * 109.46931 * 290.12677 * 12 11 10 14 14 C 1.52999 * 109.46744 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46893 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00196 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00043 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00270 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46929 * 90.00107 * 19 17 15 21 21 H 1.48499 * 109.47387 * 209.99858 * 19 17 15 22 22 H 1.48501 * 109.46917 * 330.00544 * 19 17 15 23 23 C 1.48671 * 104.29586 * 320.81723 * 11 10 9 24 24 O 1.42563 * 109.98119 * 48.07943 * 8 7 6 25 25 C 1.43039 * 113.17550 * 293.10494 * 24 8 7 26 26 C 1.33843 * 118.77880 * 59.99290 * 6 3 2 27 27 O 1.21283 * 118.69472 * 2.42241 * 26 6 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.08999 * 109.47112 * 60.00003 * 5 3 2 34 34 H 1.08998 * 109.46851 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 3 2 36 36 H 1.09001 * 109.38782 * 282.58811 * 7 6 3 37 37 H 1.08992 * 109.39235 * 42.30331 * 7 6 3 38 38 H 1.08994 * 110.35749 * 359.56043 * 9 8 7 39 39 H 1.09000 * 110.35611 * 121.85995 * 9 8 7 40 40 H 1.09004 * 110.40872 * 142.56146 * 10 9 8 41 41 H 1.09005 * 110.41237 * 264.99690 * 10 9 8 42 42 H 1.08998 * 109.46843 * 50.12378 * 12 11 10 43 43 H 1.08993 * 109.47252 * 170.12521 * 12 11 10 44 44 H 1.08998 * 109.47191 * 300.00086 * 13 12 11 45 45 H 1.09001 * 109.47206 * 59.99592 * 13 12 11 46 46 H 1.08998 * 109.47248 * 299.99834 * 14 13 12 47 47 H 1.08993 * 109.47033 * 60.00092 * 14 13 12 48 48 H 0.96996 * 120.00103 * 179.97438 * 18 17 15 49 49 H 1.08997 * 110.43286 * 280.27667 * 23 11 10 50 50 H 1.09001 * 110.42993 * 157.78077 * 23 11 10 51 51 H 1.08998 * 109.40094 * 288.49780 * 25 24 8 52 52 H 1.09007 * 109.31922 * 168.72748 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1258 6 7 1.6524 2.0974 1.2519 7 6 0.8092 3.2903 1.1904 8 6 0.1738 3.5464 2.5541 9 6 -0.9490 2.5313 2.8255 10 6 -2.2252 3.3861 2.9916 11 7 -1.9307 4.6455 2.2597 12 6 -2.7972 5.7380 2.7219 13 6 -4.2340 5.4774 2.2652 14 6 -5.1365 6.6150 2.7471 15 6 -6.5517 6.3587 2.2967 16 1 -6.7841 5.4727 1.7243 17 6 -7.5496 7.2550 2.6152 18 7 -7.2665 8.3341 3.3117 19 14 -9.3036 6.9377 2.0563 20 1 -10.0194 6.1528 3.0940 21 1 -9.9990 8.2332 1.8483 22 1 -9.2867 6.1746 0.7824 23 6 -0.5050 4.9274 2.5730 24 8 1.1655 3.4708 3.5755 25 6 1.7004 2.1550 3.7444 26 6 2.0879 1.5847 2.4090 27 8 2.8247 0.6218 2.3786 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.8532 0.9572 -1.0571 34 1 3.9281 2.4721 -0.1253 35 1 3.9994 0.9054 0.7161 36 1 1.4168 4.1485 0.9034 37 1 0.0239 3.1405 0.4496 38 1 -1.0563 1.8499 1.9816 39 1 -0.7439 1.9745 3.7398 40 1 -3.0823 2.8799 2.5475 41 1 -2.4094 3.5934 4.0458 42 1 -2.7658 5.7910 3.8101 43 1 -2.4479 6.6812 2.3020 44 1 -4.2654 5.4243 1.1769 45 1 -4.5834 4.5341 2.6851 46 1 -5.1051 6.6676 3.8353 47 1 -4.7874 7.5584 2.3275 48 1 -7.9685 8.9650 3.5355 49 1 -0.4149 5.3821 3.5595 50 1 -0.0694 5.5758 1.8129 51 1 0.9489 1.5153 4.2071 52 1 2.5799 2.2030 4.3867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274040775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:05 Heat of formation + Delta-G solvation = -78.042779 kcal Electronic energy + Delta-G solvation = -29119.128948 eV Core-core repulsion = 25311.464693 eV Total energy + Delta-G solvation = -3807.664255 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.60674 -39.44442 -37.31760 -36.64667 -34.20654 -33.45375 -32.27833 -30.55109 -30.14893 -29.86183 -27.49635 -26.63514 -25.31938 -24.09274 -23.18656 -22.69128 -21.27447 -20.51223 -19.92682 -18.64241 -17.90049 -16.90986 -16.56176 -16.20583 -15.99244 -15.78037 -15.09417 -14.84403 -14.68569 -14.38629 -14.33484 -13.94974 -13.84533 -13.63457 -13.53039 -13.24241 -13.10288 -12.63440 -12.57847 -12.29721 -12.21306 -12.03133 -11.76678 -11.62661 -11.52639 -11.44150 -11.33504 -11.21238 -11.12413 -10.84118 -10.76136 -10.57667 -10.47955 -10.37924 -9.67776 -9.49444 -9.35746 -9.07974 -8.99977 -8.42001 -8.35298 -6.00789 -4.02945 2.21596 2.48846 3.19806 3.31176 3.37566 3.41027 3.91056 4.06960 4.26184 4.35306 4.44478 4.48483 4.52505 4.73276 4.77092 4.80067 4.95137 5.03756 5.12994 5.14206 5.17620 5.30430 5.33755 5.35156 5.38401 5.39958 5.49033 5.54004 5.56531 5.66716 5.68636 5.72055 5.75454 5.81367 5.92159 5.94755 6.01260 6.09374 6.24552 6.30856 6.49929 6.63646 6.68472 6.91201 7.09428 7.13923 7.22256 7.66825 7.77933 7.81205 7.99419 8.42425 9.04248 9.61206 11.10649 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.002366 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.073925 B =11831.513907 C =12382.454654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.142 4.142 3 C 0.143 3.857 4 H 0.087 0.913 5 C -0.170 4.170 6 N -0.595 5.595 7 C 0.101 3.899 8 C 0.099 3.901 9 C -0.153 4.153 10 C 0.037 3.963 11 N -0.506 5.506 12 C 0.045 3.955 13 C -0.102 4.102 14 C 0.022 3.978 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.056 3.944 18 N -0.896 5.896 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.048 3.952 24 O -0.359 6.359 25 C 0.046 3.954 26 C 0.492 3.508 27 O -0.540 6.540 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.049 0.951 42 H 0.034 0.966 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.046 0.954 46 H 0.013 0.987 47 H 0.016 0.984 48 H 0.260 0.740 49 H 0.063 0.937 50 H 0.092 0.908 51 H 0.091 0.909 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.120 -14.010 -3.983 25.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.180 4.180 3 C 0.041 3.959 4 H 0.105 0.895 5 C -0.228 4.228 6 N -0.328 5.328 7 C -0.022 4.022 8 C 0.058 3.942 9 C -0.191 4.191 10 C -0.091 4.091 11 N -0.231 5.231 12 C -0.082 4.082 13 C -0.140 4.140 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.080 4.080 24 O -0.278 6.278 25 C -0.034 4.034 26 C 0.279 3.721 27 O -0.419 6.419 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.106 0.894 41 H 0.068 0.932 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.064 0.936 46 H 0.032 0.968 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.111 0.889 51 H 0.108 0.892 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 21.375 -14.213 -4.392 26.042 hybrid contribution -1.063 -0.047 0.492 1.173 sum 20.311 -14.260 -3.900 25.122 Atomic orbital electron populations 1.21815 0.95595 1.01696 1.01853 1.21967 0.96130 0.96111 1.03815 1.21182 0.95676 0.93784 0.85284 0.89514 1.22221 0.94971 1.02257 1.03364 1.47638 1.50335 1.28532 1.06276 1.22183 0.94518 0.87321 0.98185 1.22211 0.87770 0.97618 0.86551 1.23059 0.95049 0.98129 1.02886 1.23095 0.97248 0.91258 0.97512 1.65573 1.00992 1.03845 1.52658 1.22498 0.94823 0.93164 0.97709 1.21598 0.91273 1.00532 1.00608 1.19074 0.93438 0.92795 0.96293 1.21239 0.93156 1.07089 1.34203 0.92698 1.25026 0.99051 0.95170 0.95260 1.69962 1.33039 1.11525 1.39053 0.86605 0.84829 0.77545 0.79093 1.20709 1.21230 1.19857 1.22943 0.89845 0.93333 1.01908 1.88124 1.55795 1.27716 1.56115 1.22854 1.00905 0.85357 0.94240 1.20857 0.80432 0.84101 0.86662 1.90650 1.36164 1.27659 1.87442 0.92719 0.92743 0.92720 0.89612 0.91197 0.91880 0.92849 0.89946 0.90572 0.88595 0.89904 0.90384 0.89365 0.93233 0.94729 0.90843 0.92536 0.93551 0.96840 0.96570 0.93022 0.91843 0.88930 0.89165 0.85331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.80 37.16 0.36 -0.89 16 2 C -0.14 -1.22 5.25 -26.73 -0.14 -1.36 16 3 C 0.14 1.20 2.64 -67.93 -0.18 1.02 16 4 H 0.09 0.62 7.86 -51.93 -0.41 0.21 16 5 C -0.17 -1.45 9.09 37.16 0.34 -1.11 16 6 N -0.59 -5.44 2.22 -167.02 -0.37 -5.81 16 7 C 0.10 0.87 5.01 -4.40 -0.02 0.85 16 8 C 0.10 0.97 1.03 -89.95 -0.09 0.88 16 9 C -0.15 -1.50 5.67 -25.54 -0.14 -1.65 16 10 C 0.04 0.45 5.75 -2.09 -0.01 0.44 16 11 N -0.51 -6.70 5.37 -230.07 -1.24 -7.94 16 12 C 0.05 0.73 4.81 -3.82 -0.02 0.71 16 13 C -0.10 -2.03 5.21 -26.73 -0.14 -2.17 16 14 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 15 C -0.52 -14.55 9.11 -34.44 -0.31 -14.87 16 16 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.90 -26.80 13.29 55.43 0.74 -26.07 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 23 C 0.05 0.54 5.78 -2.38 -0.01 0.52 16 24 O -0.36 -3.73 10.35 -35.23 -0.36 -4.09 16 25 C 0.05 0.41 6.42 35.81 0.23 0.64 16 26 C 0.49 5.15 6.83 -11.60 -0.08 5.07 16 27 O -0.54 -6.91 12.74 5.55 0.07 -6.84 16 28 H 0.05 0.49 5.71 -51.93 -0.30 0.19 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.93 5.98 -51.93 -0.31 0.62 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.89 5.92 -51.93 -0.31 0.58 16 36 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 37 H 0.10 0.80 7.97 -51.93 -0.41 0.39 16 38 H 0.08 0.78 5.60 -51.93 -0.29 0.49 16 39 H 0.08 0.71 6.16 -51.93 -0.32 0.39 16 40 H 0.09 1.11 7.78 -51.93 -0.40 0.70 16 41 H 0.05 0.63 7.82 -51.93 -0.41 0.23 16 42 H 0.03 0.57 7.88 -51.93 -0.41 0.16 16 43 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.05 0.91 7.26 -51.93 -0.38 0.53 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 49 H 0.06 0.75 7.92 -51.93 -0.41 0.34 16 50 H 0.09 0.93 7.70 -51.93 -0.40 0.53 16 51 H 0.09 0.71 6.50 -51.93 -0.34 0.38 16 52 H 0.13 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 391.13 15.07 5.89 5.89 Total: -1.00 -30.97 391.13 -10.02 -40.99 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -9.27 Total: -2.66 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -0.46 Total: -10.00 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: -0.87 Total: -39.82 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.29 Total: -10.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.97 -10.02 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.048 kcal (2) G-P(sol) polarization free energy of solvation -30.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds