Wall clock time and date at job start Tue Mar 31 2020 15:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 H 1.08993 * 109.47768 * 305.00075 * 3 2 1 5 5 C 1.53009 * 109.47020 * 185.00095 * 3 2 1 6 6 N 1.46501 * 109.47174 * 65.00624 * 3 2 1 7 7 C 1.46207 * 118.77225 * 239.73098 * 6 3 2 8 8 C 1.52608 * 109.84574 * 162.27185 * 7 6 3 9 9 C 1.53782 * 110.54266 * 286.08181 * 8 7 6 10 10 C 1.54500 * 104.88323 * 240.71090 * 9 8 7 11 11 N 1.48603 * 104.61016 * 23.77976 * 10 9 8 12 12 C 1.46904 * 111.00400 * 201.21851 * 11 10 9 13 13 C 1.53006 * 109.46931 * 290.12677 * 12 11 10 14 14 C 1.52999 * 109.46744 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.46893 * 179.97438 * 14 13 12 16 16 H 1.08004 * 119.99754 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00196 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00043 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00270 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46929 * 90.00107 * 19 17 15 21 21 H 1.48499 * 109.47387 * 209.99858 * 19 17 15 22 22 H 1.48501 * 109.46917 * 330.00544 * 19 17 15 23 23 C 1.48671 * 104.29586 * 320.81723 * 11 10 9 24 24 O 1.42563 * 109.98119 * 48.07943 * 8 7 6 25 25 C 1.43039 * 113.17550 * 293.10494 * 24 8 7 26 26 C 1.33843 * 118.77880 * 59.99290 * 6 3 2 27 27 O 1.21283 * 118.69472 * 2.42241 * 26 6 3 28 28 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 29 29 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 120.00472 * 2 1 3 32 32 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 33 33 H 1.08999 * 109.47112 * 60.00003 * 5 3 2 34 34 H 1.08998 * 109.46851 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46642 * 300.00256 * 5 3 2 36 36 H 1.09001 * 109.38782 * 282.58811 * 7 6 3 37 37 H 1.08992 * 109.39235 * 42.30331 * 7 6 3 38 38 H 1.08994 * 110.35749 * 359.56043 * 9 8 7 39 39 H 1.09000 * 110.35611 * 121.85995 * 9 8 7 40 40 H 1.09004 * 110.40872 * 142.56146 * 10 9 8 41 41 H 1.09005 * 110.41237 * 264.99690 * 10 9 8 42 42 H 1.08998 * 109.46843 * 50.12378 * 12 11 10 43 43 H 1.08993 * 109.47252 * 170.12521 * 12 11 10 44 44 H 1.08998 * 109.47191 * 300.00086 * 13 12 11 45 45 H 1.09001 * 109.47206 * 59.99592 * 13 12 11 46 46 H 1.08998 * 109.47248 * 299.99834 * 14 13 12 47 47 H 1.08993 * 109.47033 * 60.00092 * 14 13 12 48 48 H 0.96996 * 120.00103 * 179.97438 * 18 17 15 49 49 H 1.08997 * 110.43286 * 280.27667 * 23 11 10 50 50 H 1.09001 * 110.42993 * 157.78077 * 23 11 10 51 51 H 1.08998 * 109.40094 * 288.49780 * 25 24 8 52 52 H 1.09007 * 109.31922 * 168.72748 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5648 1.4445 -0.1258 6 7 1.6524 2.0974 1.2519 7 6 0.8092 3.2903 1.1904 8 6 0.1738 3.5464 2.5541 9 6 -0.9490 2.5313 2.8255 10 6 -2.2252 3.3861 2.9916 11 7 -1.9307 4.6455 2.2597 12 6 -2.7972 5.7380 2.7219 13 6 -4.2340 5.4774 2.2652 14 6 -5.1365 6.6150 2.7471 15 6 -6.5517 6.3587 2.2967 16 1 -6.7841 5.4727 1.7243 17 6 -7.5496 7.2550 2.6152 18 7 -7.2665 8.3341 3.3117 19 14 -9.3036 6.9377 2.0563 20 1 -10.0194 6.1528 3.0940 21 1 -9.9990 8.2332 1.8483 22 1 -9.2867 6.1746 0.7824 23 6 -0.5050 4.9274 2.5730 24 8 1.1655 3.4708 3.5755 25 6 1.7004 2.1550 3.7444 26 6 2.0879 1.5847 2.4090 27 8 2.8247 0.6218 2.3786 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 3.8532 0.9572 -1.0571 34 1 3.9281 2.4721 -0.1253 35 1 3.9994 0.9054 0.7161 36 1 1.4168 4.1485 0.9034 37 1 0.0239 3.1405 0.4496 38 1 -1.0563 1.8499 1.9816 39 1 -0.7439 1.9745 3.7398 40 1 -3.0823 2.8799 2.5475 41 1 -2.4094 3.5934 4.0458 42 1 -2.7658 5.7910 3.8101 43 1 -2.4479 6.6812 2.3020 44 1 -4.2654 5.4243 1.1769 45 1 -4.5834 4.5341 2.6851 46 1 -5.1051 6.6676 3.8353 47 1 -4.7874 7.5584 2.3275 48 1 -7.9685 8.9650 3.5355 49 1 -0.4149 5.3821 3.5595 50 1 -0.0694 5.5758 1.8129 51 1 0.9489 1.5153 4.2071 52 1 2.5799 2.2030 4.3867 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040775.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:04 Heat of formation + Delta-G solvation = -97.262401 kcal Electronic energy + Delta-G solvation = -29119.962373 eV Core-core repulsion = 25311.464693 eV Total energy + Delta-G solvation = -3808.497681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.38293 -40.32510 -38.28320 -37.42153 -35.91430 -34.35683 -33.82837 -31.71789 -30.98206 -30.79252 -28.46738 -27.96570 -26.39244 -24.85498 -24.63061 -23.44935 -22.62376 -21.54022 -21.16271 -19.41512 -18.77162 -18.38666 -17.64657 -17.24101 -16.91090 -16.59121 -16.49214 -16.07458 -15.81909 -15.45831 -15.29867 -14.85691 -14.76751 -14.53885 -14.38319 -14.21425 -14.12921 -14.05197 -13.50775 -13.45426 -13.28222 -13.07582 -12.88219 -12.80139 -12.56234 -12.52706 -12.44154 -12.33867 -12.21967 -12.14202 -11.99844 -11.81947 -11.55471 -11.39008 -11.37012 -11.12938 -11.06203 -10.53514 -10.26030 -9.73567 -9.51342 -8.18769 -6.29335 1.41158 1.42118 1.44227 1.53398 1.77806 2.37465 2.43453 3.09571 3.14662 3.18120 3.44319 3.51781 3.64247 3.85864 4.06437 4.07815 4.12836 4.18418 4.19263 4.29204 4.34585 4.45284 4.46710 4.53808 4.55345 4.61868 4.68171 4.69174 4.74997 4.75088 4.80273 4.81272 4.93052 4.96765 4.99299 5.01800 5.08667 5.12454 5.16408 5.27039 5.31873 5.41977 5.54230 5.60622 5.66984 5.79136 5.88421 5.93875 6.00331 6.28573 6.35888 6.88001 7.01805 7.39930 8.93085 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023249 B = 0.002366 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.073925 B =11831.513907 C =12382.454654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.137 4.137 3 C 0.139 3.861 4 H 0.106 0.894 5 C -0.165 4.165 6 N -0.591 5.591 7 C 0.104 3.896 8 C 0.103 3.897 9 C -0.145 4.145 10 C 0.034 3.966 11 N -0.506 5.506 12 C 0.058 3.942 13 C -0.086 4.086 14 C 0.025 3.975 15 C -0.541 4.541 16 H 0.059 0.941 17 C -0.001 4.001 18 N -0.934 5.934 19 Si 0.963 3.037 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.263 1.263 23 C 0.049 3.951 24 O -0.369 6.369 25 C 0.046 3.954 26 C 0.487 3.513 27 O -0.568 6.568 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.028 0.972 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.047 0.953 46 H -0.011 1.011 47 H -0.007 1.007 48 H 0.263 0.737 49 H 0.056 0.944 50 H 0.107 0.893 51 H 0.102 0.898 52 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.170 -14.904 -5.257 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.175 4.175 3 C 0.037 3.963 4 H 0.124 0.876 5 C -0.223 4.223 6 N -0.323 5.323 7 C -0.019 4.019 8 C 0.062 3.938 9 C -0.182 4.182 10 C -0.094 4.094 11 N -0.231 5.231 12 C -0.070 4.070 13 C -0.124 4.124 14 C -0.013 4.013 15 C -0.579 4.579 16 H 0.077 0.923 17 C -0.199 4.199 18 N -0.574 5.574 19 Si 0.788 3.212 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.080 4.080 24 O -0.287 6.287 25 C -0.033 4.033 26 C 0.275 3.725 27 O -0.449 6.449 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.105 0.895 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.060 0.940 42 H 0.047 0.953 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.007 0.993 47 H 0.012 0.988 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.125 0.875 51 H 0.120 0.880 52 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 21.431 -15.113 -5.677 26.831 hybrid contribution -1.039 0.233 0.908 1.399 sum 20.393 -14.880 -4.769 25.691 Atomic orbital electron populations 1.21785 0.95206 1.01793 1.01841 1.21900 0.96363 0.96119 1.03164 1.21324 0.95653 0.93867 0.85479 0.87605 1.22153 0.95008 1.02035 1.03067 1.47672 1.49857 1.28455 1.06308 1.22203 0.94774 0.87446 0.97481 1.22120 0.87764 0.96631 0.87237 1.23003 0.93729 0.97850 1.03648 1.23126 0.98390 0.91095 0.96819 1.65498 1.01810 1.03172 1.52588 1.22198 0.93274 0.94360 0.97215 1.21318 0.92636 0.98217 1.00211 1.18978 0.93886 0.93853 0.94558 1.21697 0.94628 1.07293 1.34256 0.92261 1.25970 1.03830 0.94849 0.95237 1.70093 1.34606 1.12532 1.40201 0.85477 0.79064 0.77639 0.79061 1.19854 1.20789 1.18698 1.22978 0.88466 0.94467 1.02051 1.88113 1.55820 1.28483 1.56301 1.22960 1.01700 0.84870 0.93785 1.21107 0.80133 0.83817 0.87409 1.90651 1.37453 1.28911 1.87857 0.93523 0.91808 0.92662 0.92051 0.90046 0.90372 0.92776 0.92395 0.89537 0.87777 0.89190 0.89587 0.89833 0.94048 0.95333 0.90765 0.92668 0.93380 0.99287 0.98846 0.92817 0.92543 0.87478 0.88003 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.80 71.98 0.71 -1.46 16 2 C -0.14 -2.15 5.25 30.60 0.16 -1.99 16 3 C 0.14 2.06 2.64 44.99 0.12 2.18 16 4 H 0.11 1.19 7.86 -2.39 -0.02 1.17 16 5 C -0.16 -2.58 9.09 71.99 0.65 -1.92 16 6 N -0.59 -9.73 2.22 -801.23 -1.78 -11.50 16 7 C 0.10 1.54 5.01 86.30 0.43 1.97 16 8 C 0.10 1.81 1.03 -10.36 -0.01 1.80 16 9 C -0.14 -2.57 5.67 31.37 0.18 -2.40 16 10 C 0.03 0.78 5.75 86.48 0.50 1.27 16 11 N -0.51 -12.75 5.37 -881.81 -4.74 -17.48 16 12 C 0.06 1.84 4.81 86.30 0.41 2.26 16 13 C -0.09 -3.41 5.21 30.60 0.16 -3.25 16 14 C 0.02 1.29 4.97 29.85 0.15 1.44 16 15 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 16 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 17 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 18 N -0.93 -56.66 13.29 21.44 0.28 -56.38 16 19 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 22 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 23 C 0.05 0.99 5.78 86.26 0.50 1.49 16 24 O -0.37 -6.99 10.35 -148.98 -1.54 -8.54 16 25 C 0.05 0.75 6.42 71.11 0.46 1.21 16 26 C 0.49 9.63 6.83 87.68 0.60 10.23 16 27 O -0.57 -14.33 12.74 -3.04 -0.04 -14.37 16 28 H 0.05 0.75 5.71 -2.39 -0.01 0.73 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 1.30 5.98 -2.39 -0.01 1.28 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 1.22 5.92 -2.39 -0.01 1.21 16 36 H 0.09 1.15 7.94 -2.39 -0.02 1.14 16 37 H 0.10 1.43 7.97 -2.39 -0.02 1.41 16 38 H 0.09 1.51 5.60 -2.39 -0.01 1.49 16 39 H 0.09 1.41 6.16 -2.39 -0.01 1.40 16 40 H 0.08 2.01 7.78 -2.39 -0.02 1.99 16 41 H 0.04 1.03 7.82 -2.38 -0.02 1.01 16 42 H 0.03 0.94 7.88 -2.39 -0.02 0.92 16 43 H 0.07 2.35 8.13 -2.39 -0.02 2.33 16 44 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 45 H 0.05 1.87 7.26 -2.39 -0.02 1.85 16 46 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 47 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 48 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 49 H 0.06 1.27 7.92 -2.39 -0.02 1.25 16 50 H 0.11 1.89 7.70 -2.39 -0.02 1.87 16 51 H 0.10 1.44 6.50 -2.39 -0.02 1.42 16 52 H 0.14 1.97 8.14 -2.38 -0.02 1.95 16 Total: -1.00 -66.90 391.13 0.80 -66.10 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.88 Total: 13.29 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 5.71 Total: -17.14 kcal Atomic # 7 Polarization: -79.13 SS G_CDS: -6.23 Total: -85.36 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -1.58 Total: -22.90 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -66.90 0.80 -66.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040775.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.164 kcal (2) G-P(sol) polarization free energy of solvation -66.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds