Wall clock time and date at job start Tue Mar 31 2020 15:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46881 * 2 1 4 4 H 1.09000 * 109.47024 * 304.99624 * 3 2 1 5 5 O 1.42900 * 109.47381 * 65.00197 * 3 2 1 6 6 C 1.53002 * 109.46755 * 185.00081 * 3 2 1 7 7 N 1.46907 * 109.47031 * 179.97438 * 6 3 2 8 8 C 1.46971 * 111.00079 * 294.48302 * 7 6 3 9 9 C 1.53043 * 109.46493 * 175.37821 * 8 7 6 10 10 C 1.53130 * 109.34929 * 59.83847 * 9 8 7 11 11 C 1.53243 * 109.07089 * 301.68157 * 10 9 8 12 12 C 1.45968 * 111.00171 * 169.99655 * 7 6 3 13 13 C 1.53970 * 110.69993 * 60.28374 * 12 7 6 14 14 C 1.51437 * 104.13327 * 265.79974 * 13 12 7 15 15 O 1.21277 * 124.94874 * 164.55871 * 14 13 12 16 16 N 1.34496 * 110.10402 * 344.67718 * 14 13 12 17 17 C 1.46500 * 124.35203 * 179.46184 * 16 14 13 18 18 C 1.52997 * 109.47473 * 269.70425 * 17 16 14 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46890 * 120.00210 * 23 21 19 26 26 H 1.48501 * 109.47062 * 240.00257 * 23 21 19 27 27 C 1.46916 * 111.29894 * 359.20015 * 16 14 13 28 28 H 1.09001 * 109.47014 * 60.00482 * 1 2 3 29 29 H 1.09003 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46928 * 300.00079 * 1 2 3 31 31 H 1.08999 * 109.46928 * 239.99921 * 2 1 3 32 32 H 1.08999 * 109.46588 * 120.00155 * 2 1 3 33 33 H 0.96693 * 114.00339 * 59.99675 * 5 3 2 34 34 H 1.08994 * 109.47503 * 59.99992 * 6 3 2 35 35 H 1.09000 * 109.46982 * 299.99569 * 6 3 2 36 36 H 1.08999 * 109.47260 * 55.38225 * 8 7 6 37 37 H 1.09001 * 109.47380 * 295.37724 * 8 7 6 38 38 H 1.09002 * 109.49059 * 299.88091 * 9 8 7 39 39 H 1.09001 * 109.50974 * 179.81506 * 9 8 7 40 40 H 1.08996 * 109.53838 * 181.80152 * 10 9 8 41 41 H 1.09002 * 109.53733 * 61.55301 * 10 9 8 42 42 H 1.09006 * 109.47394 * 296.41659 * 11 10 9 43 43 H 1.08996 * 109.47957 * 176.39103 * 11 10 9 44 44 H 1.08992 * 110.51172 * 24.66776 * 13 12 7 45 45 H 1.08998 * 110.50618 * 147.37436 * 13 12 7 46 46 H 1.09002 * 109.47129 * 149.70167 * 17 16 14 47 47 H 1.08998 * 109.46845 * 29.70974 * 17 16 14 48 48 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 49 49 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 50 50 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 51 51 H 1.08999 * 110.27134 * 135.65996 * 27 16 14 52 52 H 1.08998 * 110.27248 * 257.73053 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5648 1.4443 -0.1257 7 7 4.0545 2.8293 -0.1264 8 6 3.5933 3.5505 -1.3211 9 6 4.0246 5.0161 -1.2303 10 6 5.5514 5.0910 -1.1404 11 6 6.0202 4.3009 0.0861 12 6 5.5087 2.8701 -0.0076 13 6 6.1720 2.1351 -1.1867 14 6 6.4010 0.7316 -0.6659 15 8 6.6567 -0.2324 -1.3559 16 7 6.2770 0.7095 0.6732 17 6 6.4253 -0.4925 1.4973 18 6 5.0644 -1.1737 1.6553 19 6 5.2171 -2.4106 2.5026 20 1 6.1876 -2.6833 2.8901 21 6 4.1176 -3.1935 2.7841 22 7 2.9357 -2.8611 2.3127 23 14 4.3068 -4.7262 3.8349 24 1 5.7279 -4.8774 4.2387 25 1 3.4586 -4.6027 5.0477 26 1 3.8842 -5.9168 3.0544 27 6 5.9798 2.0469 1.2037 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0141 1.6543 2.0139 34 1 3.8532 0.9570 -1.0571 35 1 3.9994 0.9053 0.7161 36 1 2.5065 3.4947 -1.3822 37 1 4.0311 3.0973 -2.2106 38 1 3.5853 5.4701 -0.3420 39 1 3.6858 5.5509 -2.1176 40 1 5.8602 6.1318 -1.0434 41 1 5.9911 4.6614 -2.0405 42 1 5.6297 4.7680 0.9903 43 1 7.1096 4.2960 0.1208 44 1 5.5074 2.1211 -2.0505 45 1 7.1225 2.6032 -1.4425 46 1 6.8088 -0.2149 2.4792 47 1 7.1217 -1.1792 1.0162 48 1 4.6809 -1.4514 0.6735 49 1 4.3681 -0.4869 2.1365 50 1 2.1623 -3.4121 2.5104 51 1 5.1890 1.9893 1.9517 52 1 6.8773 2.4900 1.6353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274551884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:31 Heat of formation + Delta-G solvation = -92.282429 kcal Electronic energy + Delta-G solvation = -30941.681826 eV Core-core repulsion = 27133.400093 eV Total energy + Delta-G solvation = -3808.281733 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33691 -38.35258 -37.23623 -35.67615 -33.71323 -33.37743 -32.22569 -32.09855 -29.76000 -28.43747 -27.80601 -26.14889 -24.71205 -24.13100 -22.37879 -21.64108 -21.16758 -20.67643 -19.19121 -18.44277 -17.01069 -16.30078 -16.23776 -15.80346 -15.56977 -15.06195 -14.88665 -14.64537 -14.46079 -14.30956 -13.99093 -13.89030 -13.41703 -13.19087 -12.94693 -12.93598 -12.64476 -12.51027 -12.21380 -12.04701 -11.75529 -11.69612 -11.55518 -11.50335 -11.37978 -11.24407 -11.00544 -10.74945 -10.72845 -10.64896 -10.45630 -10.35816 -10.16427 -10.02979 -9.89837 -9.46127 -9.41054 -9.13523 -8.42050 -8.16525 -8.06222 -6.08206 -4.10294 2.99133 3.27434 3.35556 3.38547 3.51132 3.76609 4.37032 4.41885 4.47359 4.71522 4.82167 4.86599 4.90460 5.03981 5.11544 5.22932 5.29054 5.30244 5.40679 5.44760 5.49426 5.56544 5.62214 5.65085 5.71313 5.77350 5.79905 5.84403 5.89015 5.96394 5.99051 6.00909 6.05200 6.07563 6.18675 6.28689 6.31093 6.41614 6.48207 6.63957 6.72836 6.91171 6.92655 7.13658 7.21055 7.42871 7.59409 7.77833 7.90497 8.09503 8.28546 8.63001 8.94724 9.54007 11.02649 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004869 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.387134 B = 5749.290405 C = 7154.602189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.161 4.161 3 C 0.120 3.880 4 H 0.084 0.916 5 O -0.554 6.554 6 C 0.006 3.994 7 N -0.505 5.505 8 C 0.050 3.950 9 C -0.115 4.115 10 C -0.120 4.120 11 C -0.097 4.097 12 C 0.107 3.893 13 C -0.188 4.188 14 C 0.512 3.488 15 O -0.536 6.536 16 N -0.612 5.612 17 C 0.124 3.876 18 C 0.016 3.984 19 C -0.523 4.523 20 H 0.056 0.944 21 C 0.063 3.937 22 N -0.887 5.887 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.109 3.891 28 H 0.041 0.959 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.095 0.905 33 H 0.375 0.625 34 H 0.037 0.963 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.096 0.904 45 H 0.101 0.899 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.020 0.980 49 H 0.017 0.983 50 H 0.260 0.740 51 H 0.090 0.910 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.298 16.978 -5.141 17.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.199 4.199 3 C 0.061 3.939 4 H 0.102 0.898 5 O -0.359 6.359 6 C -0.121 4.121 7 N -0.229 5.229 8 C -0.078 4.078 9 C -0.152 4.152 10 C -0.158 4.158 11 C -0.136 4.136 12 C 0.015 3.985 13 C -0.230 4.230 14 C 0.299 3.701 15 O -0.414 6.414 16 N -0.345 5.345 17 C 0.004 3.996 18 C -0.022 4.022 19 C -0.562 4.562 20 H 0.074 0.926 21 C -0.139 4.139 22 N -0.526 5.526 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 C -0.015 4.015 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.222 0.778 34 H 0.056 0.944 35 H 0.125 0.875 36 H 0.097 0.903 37 H 0.051 0.949 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.114 0.886 45 H 0.119 0.881 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.035 0.965 50 H 0.070 0.930 51 H 0.109 0.891 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.757 16.972 -5.441 17.839 hybrid contribution 0.659 -1.826 0.116 1.945 sum 1.416 15.145 -5.325 16.117 Atomic orbital electron populations 1.21602 0.95770 1.01130 1.01069 1.22230 0.96372 0.96467 1.04822 1.21821 0.91684 0.92840 0.87598 0.89774 1.86454 1.76656 1.57274 1.15498 1.23249 0.97119 0.88538 1.03189 1.61765 1.07410 1.14682 1.39010 1.22188 1.00640 0.94050 0.90895 1.21560 0.95630 0.95819 1.02230 1.21605 0.96164 0.99974 0.98064 1.21413 0.99960 0.92722 0.99459 1.21354 0.88225 0.95359 0.93521 1.23058 1.03505 0.95651 1.00756 1.20712 0.76512 0.90084 0.82775 1.90705 1.49373 1.40111 1.61177 1.48656 1.69538 1.09215 1.07129 1.21842 1.01672 0.83429 0.92630 1.19406 0.90414 0.94911 0.97420 1.21089 0.94521 1.08718 1.31822 0.92577 1.24927 0.95297 0.97714 0.95932 1.69920 0.99015 1.38727 1.44945 0.86545 0.78177 0.83184 0.80130 1.19778 1.21016 1.21041 1.22104 1.00831 0.82203 0.96327 0.93986 0.92967 0.92452 0.91918 0.88605 0.77773 0.94437 0.87464 0.90261 0.94910 0.90836 0.91829 0.91695 0.92169 0.90369 0.91181 0.88578 0.88058 0.91587 0.91174 0.96151 0.96467 0.93031 0.89138 0.90892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.81 37.16 0.36 -1.72 16 2 C -0.16 -2.72 5.61 -26.73 -0.15 -2.87 16 3 C 0.12 1.81 2.83 -26.73 -0.08 1.74 16 4 H 0.08 1.20 6.44 -51.93 -0.33 0.87 16 5 O -0.55 -8.50 12.74 -35.23 -0.45 -8.95 16 6 C 0.01 0.10 3.18 -3.82 -0.01 0.09 16 7 N -0.51 -6.50 4.32 -218.92 -0.95 -7.44 16 8 C 0.05 0.56 5.05 -3.76 -0.02 0.54 16 9 C -0.11 -1.04 6.07 -26.64 -0.16 -1.20 16 10 C -0.12 -1.00 5.81 -26.54 -0.15 -1.15 16 11 C -0.10 -0.89 4.65 -27.00 -0.13 -1.02 16 12 C 0.11 1.27 0.71 -131.55 -0.09 1.18 16 13 C -0.19 -2.53 4.48 -27.01 -0.12 -2.65 16 14 C 0.51 9.41 6.55 -10.75 -0.07 9.34 16 15 O -0.54 -12.30 17.59 5.56 0.10 -12.20 16 16 N -0.61 -10.61 1.96 -172.60 -0.34 -10.94 16 17 C 0.12 2.52 5.88 -4.04 -0.02 2.50 16 18 C 0.02 0.39 4.30 -27.88 -0.12 0.27 16 19 C -0.52 -14.09 9.11 -34.44 -0.31 -14.40 16 20 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 23 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.11 1.47 5.68 -3.37 -0.02 1.45 16 28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.86 7.82 -51.93 -0.41 0.45 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.10 1.96 8.14 -51.93 -0.42 1.53 16 33 H 0.38 5.43 9.04 45.56 0.41 5.84 16 34 H 0.04 0.66 6.78 -51.93 -0.35 0.30 16 35 H 0.11 1.92 3.40 -51.93 -0.18 1.74 16 36 H 0.08 0.92 6.25 -51.93 -0.32 0.60 16 37 H 0.03 0.38 6.21 -51.93 -0.32 0.06 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.06 0.50 7.59 -51.93 -0.39 0.11 16 42 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.56 8.05 -51.93 -0.42 0.14 16 44 H 0.10 1.32 5.74 -51.93 -0.30 1.02 16 45 H 0.10 1.17 7.80 -51.93 -0.40 0.77 16 46 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.07 1.54 7.92 -51.93 -0.41 1.12 16 48 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 49 H 0.02 0.42 7.22 -51.93 -0.37 0.05 16 50 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.09 1.29 7.44 -51.93 -0.39 0.91 16 52 H 0.07 0.83 7.85 -51.93 -0.41 0.42 16 LS Contribution 388.98 15.07 5.86 5.86 Total: -1.00 -30.41 388.98 -9.62 -40.03 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -8.37 Total: 7.89 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -1.19 Total: -6.27 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.55 Total: -42.43 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.35 Total: -21.15 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.41 -9.62 -40.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274551884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.249 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds