Wall clock time and date at job start Tue Mar 31 2020 15:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46881 * 2 1 4 4 H 1.09000 * 109.47024 * 304.99624 * 3 2 1 5 5 O 1.42900 * 109.47381 * 65.00197 * 3 2 1 6 6 C 1.53002 * 109.46755 * 185.00081 * 3 2 1 7 7 N 1.46907 * 109.47031 * 179.97438 * 6 3 2 8 8 C 1.46971 * 111.00079 * 294.48302 * 7 6 3 9 9 C 1.53043 * 109.46493 * 175.37821 * 8 7 6 10 10 C 1.53130 * 109.34929 * 59.83847 * 9 8 7 11 11 C 1.53243 * 109.07089 * 301.68157 * 10 9 8 12 12 C 1.45968 * 111.00171 * 169.99655 * 7 6 3 13 13 C 1.53970 * 110.69993 * 60.28374 * 12 7 6 14 14 C 1.51437 * 104.13327 * 265.79974 * 13 12 7 15 15 O 1.21277 * 124.94874 * 164.55871 * 14 13 12 16 16 N 1.34496 * 110.10402 * 344.67718 * 14 13 12 17 17 C 1.46500 * 124.35203 * 179.46184 * 16 14 13 18 18 C 1.52997 * 109.47473 * 269.70425 * 17 16 14 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99913 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99734 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47432 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46890 * 120.00210 * 23 21 19 26 26 H 1.48501 * 109.47062 * 240.00257 * 23 21 19 27 27 C 1.46916 * 111.29894 * 359.20015 * 16 14 13 28 28 H 1.09001 * 109.47014 * 60.00482 * 1 2 3 29 29 H 1.09003 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46928 * 300.00079 * 1 2 3 31 31 H 1.08999 * 109.46928 * 239.99921 * 2 1 3 32 32 H 1.08999 * 109.46588 * 120.00155 * 2 1 3 33 33 H 0.96693 * 114.00339 * 59.99675 * 5 3 2 34 34 H 1.08994 * 109.47503 * 59.99992 * 6 3 2 35 35 H 1.09000 * 109.46982 * 299.99569 * 6 3 2 36 36 H 1.08999 * 109.47260 * 55.38225 * 8 7 6 37 37 H 1.09001 * 109.47380 * 295.37724 * 8 7 6 38 38 H 1.09002 * 109.49059 * 299.88091 * 9 8 7 39 39 H 1.09001 * 109.50974 * 179.81506 * 9 8 7 40 40 H 1.08996 * 109.53838 * 181.80152 * 10 9 8 41 41 H 1.09002 * 109.53733 * 61.55301 * 10 9 8 42 42 H 1.09006 * 109.47394 * 296.41659 * 11 10 9 43 43 H 1.08996 * 109.47957 * 176.39103 * 11 10 9 44 44 H 1.08992 * 110.51172 * 24.66776 * 13 12 7 45 45 H 1.08998 * 110.50618 * 147.37436 * 13 12 7 46 46 H 1.09002 * 109.47129 * 149.70167 * 17 16 14 47 47 H 1.08998 * 109.46845 * 29.70974 * 17 16 14 48 48 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 49 49 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 50 50 H 0.97002 * 119.99768 * 179.97438 * 22 21 19 51 51 H 1.08999 * 110.27134 * 135.65996 * 27 16 14 52 52 H 1.08998 * 110.27248 * 257.73053 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 -0.8419 5 8 1.6620 2.0814 1.2210 6 6 3.5648 1.4443 -0.1257 7 7 4.0545 2.8293 -0.1264 8 6 3.5933 3.5505 -1.3211 9 6 4.0246 5.0161 -1.2303 10 6 5.5514 5.0910 -1.1404 11 6 6.0202 4.3009 0.0861 12 6 5.5087 2.8701 -0.0076 13 6 6.1720 2.1351 -1.1867 14 6 6.4010 0.7316 -0.6659 15 8 6.6567 -0.2324 -1.3559 16 7 6.2770 0.7095 0.6732 17 6 6.4253 -0.4925 1.4973 18 6 5.0644 -1.1737 1.6553 19 6 5.2171 -2.4106 2.5026 20 1 6.1876 -2.6833 2.8901 21 6 4.1176 -3.1935 2.7841 22 7 2.9357 -2.8611 2.3127 23 14 4.3068 -4.7262 3.8349 24 1 5.7279 -4.8774 4.2387 25 1 3.4586 -4.6027 5.0477 26 1 3.8842 -5.9168 3.0544 27 6 5.9798 2.0469 1.2037 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0141 1.6543 2.0139 34 1 3.8532 0.9570 -1.0571 35 1 3.9994 0.9053 0.7161 36 1 2.5065 3.4947 -1.3822 37 1 4.0311 3.0973 -2.2106 38 1 3.5853 5.4701 -0.3420 39 1 3.6858 5.5509 -2.1176 40 1 5.8602 6.1318 -1.0434 41 1 5.9911 4.6614 -2.0405 42 1 5.6297 4.7680 0.9903 43 1 7.1096 4.2960 0.1208 44 1 5.5074 2.1211 -2.0505 45 1 7.1225 2.6032 -1.4425 46 1 6.8088 -0.2149 2.4792 47 1 7.1217 -1.1792 1.0162 48 1 4.6809 -1.4514 0.6735 49 1 4.3681 -0.4869 2.1365 50 1 2.1623 -3.4121 2.5104 51 1 5.1890 1.9893 1.9517 52 1 6.8773 2.4900 1.6353 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274551884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:30 Heat of formation + Delta-G solvation = -113.049555 kcal Electronic energy + Delta-G solvation = -30942.582356 eV Core-core repulsion = 27133.400093 eV Total energy + Delta-G solvation = -3809.182263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.52107 -39.67810 -38.47660 -37.16005 -35.48344 -34.39400 -33.69991 -33.48211 -31.25879 -29.70121 -28.99546 -27.50232 -26.23709 -25.30923 -23.53206 -23.27497 -22.27144 -21.98516 -20.52651 -19.55007 -18.72367 -17.83820 -17.44958 -17.15739 -16.91872 -16.55896 -16.24949 -16.12067 -15.75587 -15.55194 -15.06794 -15.01601 -14.80306 -14.52940 -14.30256 -14.19570 -14.04335 -13.85474 -13.59676 -13.33196 -13.05274 -12.96404 -12.90706 -12.82687 -12.73008 -12.58134 -12.54874 -12.28272 -11.97096 -11.87840 -11.86161 -11.76374 -11.43495 -11.38533 -11.22288 -11.07386 -10.82853 -10.69086 -10.55458 -9.59312 -9.26861 -8.19495 -6.30264 1.38263 1.40199 1.50977 1.54584 2.10360 2.42197 2.69157 3.13804 3.30187 3.36257 3.59311 3.78612 3.82967 3.85036 4.03458 4.11081 4.18245 4.26611 4.29894 4.33004 4.37662 4.41026 4.50440 4.53654 4.63315 4.64706 4.70174 4.72145 4.76542 4.82351 4.88934 4.92451 4.95943 5.02649 5.13634 5.14850 5.18711 5.29861 5.31192 5.33699 5.37925 5.43925 5.49054 5.58447 5.59976 5.82967 6.02698 6.17644 6.21370 6.25228 6.81021 6.82099 7.16095 7.38060 8.90367 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012845 B = 0.004869 C = 0.003913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.387134 B = 5749.290405 C = 7154.602189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.155 4.155 3 C 0.131 3.869 4 H 0.101 0.899 5 O -0.553 6.553 6 C 0.020 3.980 7 N -0.503 5.503 8 C 0.045 3.955 9 C -0.109 4.109 10 C -0.118 4.118 11 C -0.092 4.092 12 C 0.113 3.887 13 C -0.173 4.173 14 C 0.499 3.501 15 O -0.594 6.594 16 N -0.611 5.611 17 C 0.136 3.864 18 C 0.037 3.963 19 C -0.547 4.547 20 H 0.059 0.941 21 C 0.014 3.986 22 N -0.913 5.913 23 Si 0.957 3.043 24 H -0.265 1.265 25 H -0.275 1.275 26 H -0.285 1.285 27 C 0.104 3.896 28 H 0.064 0.936 29 H 0.045 0.955 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.053 0.947 33 H 0.377 0.623 34 H 0.010 0.990 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.030 0.970 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.131 0.869 46 H 0.090 0.910 47 H 0.049 0.951 48 H -0.027 1.027 49 H 0.007 0.993 50 H 0.262 0.738 51 H 0.081 0.919 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.972 19.848 -4.659 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.193 4.193 3 C 0.072 3.928 4 H 0.119 0.881 5 O -0.358 6.358 6 C -0.109 4.109 7 N -0.226 5.226 8 C -0.082 4.082 9 C -0.147 4.147 10 C -0.155 4.155 11 C -0.130 4.130 12 C 0.022 3.978 13 C -0.214 4.214 14 C 0.288 3.712 15 O -0.476 6.476 16 N -0.343 5.343 17 C 0.014 3.986 18 C -0.001 4.001 19 C -0.586 4.586 20 H 0.077 0.923 21 C -0.186 4.186 22 N -0.552 5.552 23 Si 0.783 3.217 24 H -0.189 1.189 25 H -0.200 1.200 26 H -0.211 1.211 27 C -0.018 4.018 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.225 0.775 34 H 0.028 0.972 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.103 0.897 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.149 0.851 46 H 0.108 0.892 47 H 0.067 0.933 48 H -0.008 1.008 49 H 0.026 0.974 50 H 0.070 0.930 51 H 0.100 0.900 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.430 19.895 -4.935 20.548 hybrid contribution 0.405 -2.737 -0.043 2.767 sum 1.835 17.158 -4.977 17.960 Atomic orbital electron populations 1.21548 0.93931 1.01159 1.02231 1.22127 0.97948 0.97357 1.01899 1.21705 0.91462 0.91558 0.88093 0.88143 1.86434 1.76659 1.57118 1.15587 1.22959 0.97322 0.90027 1.00558 1.61823 1.08219 1.12478 1.40048 1.22307 1.00426 0.95555 0.89868 1.21545 0.96515 0.93656 1.02944 1.21622 0.95202 1.01155 0.97569 1.21457 1.01224 0.89944 1.00368 1.21519 0.87409 0.97173 0.91721 1.23057 1.05102 0.92252 1.01016 1.21641 0.75265 0.91526 0.82778 1.90660 1.51980 1.42555 1.62418 1.48668 1.68765 1.09882 1.06983 1.21451 0.98611 0.84474 0.94043 1.19105 0.92268 0.94478 0.94203 1.21491 0.94783 1.09927 1.32385 0.92293 1.25771 0.95015 1.00733 0.97103 1.70060 0.99628 1.39765 1.45702 0.85517 0.78573 0.79113 0.78523 1.18865 1.20044 1.21141 1.22433 1.02189 0.80293 0.96899 0.91723 0.93569 0.92226 0.93591 0.92773 0.77499 0.97156 0.90139 0.90756 0.95184 0.91094 0.90149 0.89449 0.91950 0.89656 0.89017 0.88768 0.85071 0.89212 0.93276 1.00846 0.97434 0.92958 0.90047 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.03 9.81 71.98 0.71 -3.32 16 2 C -0.15 -5.59 5.61 30.59 0.17 -5.42 16 3 C 0.13 4.07 2.83 30.59 0.09 4.16 16 4 H 0.10 2.82 6.44 -2.39 -0.02 2.81 16 5 O -0.55 -16.96 12.74 -148.98 -1.90 -18.86 16 6 C 0.02 0.64 3.18 86.30 0.27 0.91 16 7 N -0.50 -12.39 4.32 -846.54 -3.66 -16.05 16 8 C 0.05 0.94 5.05 86.30 0.44 1.38 16 9 C -0.11 -1.59 6.07 30.65 0.19 -1.41 16 10 C -0.12 -1.42 5.81 30.72 0.18 -1.24 16 11 C -0.09 -1.28 4.65 30.42 0.14 -1.14 16 12 C 0.11 2.46 0.71 4.06 0.00 2.47 16 13 C -0.17 -4.43 4.48 30.41 0.14 -4.29 16 14 C 0.50 18.82 6.55 87.94 0.58 19.39 16 15 O -0.59 -28.82 17.59 -3.02 -0.05 -28.88 16 16 N -0.61 -21.59 1.96 -818.54 -1.60 -23.19 16 17 C 0.14 5.72 5.88 86.38 0.51 6.23 16 18 C 0.04 1.93 4.30 29.85 0.13 2.05 16 19 C -0.55 -30.55 9.11 25.60 0.23 -30.31 16 20 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 21 C 0.01 0.76 5.46 84.66 0.46 1.22 16 22 N -0.91 -53.08 13.29 21.45 0.28 -52.80 16 23 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 25 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 27 C 0.10 2.65 5.68 86.59 0.49 3.15 16 28 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.06 1.79 7.82 -2.39 -0.02 1.77 16 31 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.05 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.38 11.26 9.04 -74.06 -0.67 10.59 16 34 H 0.01 0.38 6.78 -2.39 -0.02 0.37 16 35 H 0.08 3.06 3.40 -2.39 -0.01 3.06 16 36 H 0.07 1.61 6.25 -2.39 -0.01 1.59 16 37 H 0.03 0.65 6.21 -2.39 -0.01 0.64 16 38 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.06 0.76 7.59 -2.39 -0.02 0.75 16 42 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.09 0.97 8.05 -2.39 -0.02 0.95 16 44 H 0.09 2.51 5.74 -2.39 -0.01 2.50 16 45 H 0.13 2.61 7.80 -2.39 -0.02 2.59 16 46 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 47 H 0.05 2.26 7.92 -2.39 -0.02 2.24 16 48 H -0.03 -1.63 8.14 -2.39 -0.02 -1.65 16 49 H 0.01 0.39 7.22 -2.39 -0.02 0.38 16 50 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 51 H 0.08 2.27 7.44 -2.39 -0.02 2.25 16 52 H 0.11 2.06 7.85 -2.39 -0.02 2.04 16 Total: -1.00 -70.70 388.98 0.05 -70.65 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.23 Total: 29.39 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 4.72 Total: -6.18 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -4.98 Total: -92.04 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -1.95 Total: -47.73 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -70.70 0.05 -70.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274551884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.399 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds