Wall clock time and date at job start Tue Mar 31 2020 15:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47022 * 2 1 4 4 H 1.08993 * 109.46720 * 55.00017 * 3 2 1 5 5 C 1.53005 * 109.47067 * 294.99995 * 3 2 1 6 6 C 1.52997 * 109.46922 * 175.00255 * 3 2 1 7 7 N 1.46505 * 109.46862 * 182.86977 * 6 3 2 8 8 C 1.46498 * 119.99855 * 267.33512 * 7 6 3 9 9 C 1.52998 * 109.47216 * 263.87796 * 8 7 6 10 10 C 1.34777 * 119.99693 * 87.33702 * 7 6 3 11 11 O 1.21346 * 120.00042 * 355.00088 * 10 7 6 12 12 C 1.49453 * 119.99739 * 174.99835 * 10 7 6 13 13 O 1.21354 * 120.00098 * 6.63206 * 12 10 7 14 14 N 1.34773 * 119.99820 * 186.63608 * 12 10 7 15 15 C 1.46923 * 120.63543 * 6.05244 * 14 12 10 16 16 C 1.52756 * 109.01107 * 233.58739 * 15 14 12 17 17 C 1.53038 * 109.38128 * 305.58450 * 16 15 14 18 18 C 1.50705 * 109.44953 * 181.25360 * 17 16 15 19 19 H 1.08001 * 120.00083 * 239.94203 * 18 17 16 20 20 C 1.37875 * 119.99709 * 59.93915 * 18 17 16 21 21 N 1.31510 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99726 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47333 * 89.99928 * 22 20 18 24 24 H 1.48504 * 109.47265 * 209.99956 * 22 20 18 25 25 H 1.48501 * 109.47377 * 329.99910 * 22 20 18 26 26 C 1.53045 * 109.53953 * 61.24067 * 17 16 15 27 27 C 1.46930 * 120.63045 * 186.33319 * 14 12 10 28 28 H 1.08993 * 109.46874 * 299.99916 * 1 2 3 29 29 H 1.09003 * 109.46915 * 59.99883 * 1 2 3 30 30 H 1.08998 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47058 * 240.00191 * 2 1 3 32 32 H 1.08992 * 109.47388 * 120.00091 * 2 1 3 33 33 H 1.09006 * 109.47004 * 62.38568 * 5 3 2 34 34 H 1.08993 * 109.47013 * 182.38504 * 5 3 2 35 35 H 1.08996 * 109.47184 * 302.38769 * 5 3 2 36 36 H 1.09002 * 109.47250 * 302.87080 * 6 3 2 37 37 H 1.08994 * 109.47548 * 62.87265 * 6 3 2 38 38 H 1.08999 * 109.46952 * 23.88198 * 8 7 6 39 39 H 1.09007 * 109.46645 * 143.88286 * 8 7 6 40 40 H 1.09001 * 109.46954 * 65.15679 * 9 8 7 41 41 H 1.08995 * 109.47046 * 185.15484 * 9 8 7 42 42 H 1.08998 * 109.47235 * 305.15903 * 9 8 7 43 43 H 1.09007 * 109.58566 * 353.42243 * 15 14 12 44 44 H 1.09001 * 109.59123 * 113.84156 * 15 14 12 45 45 H 1.09008 * 109.56619 * 185.54751 * 16 15 14 46 46 H 1.09001 * 109.38779 * 65.51331 * 16 15 14 47 47 H 1.09002 * 109.46077 * 301.21758 * 17 16 15 48 48 H 0.97000 * 120.00092 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.49728 * 178.68135 * 26 17 16 50 50 H 1.09000 * 109.51979 * 58.60019 * 26 17 16 51 51 H 1.09005 * 109.58486 * 246.15692 * 27 14 12 52 52 H 1.09001 * 109.58318 * 6.43884 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 7 4.0475 2.8259 0.1946 8 6 4.4483 3.5237 -1.0296 9 6 5.9641 3.4146 -1.2058 10 6 4.1227 3.4548 1.3843 11 8 3.7064 2.9105 2.3857 12 6 4.7189 4.8226 1.4700 13 8 5.0246 5.4159 0.4565 14 7 4.9171 5.3971 2.6730 15 6 4.6768 4.6436 3.9112 16 6 3.7215 5.4380 4.7997 17 6 4.2828 6.8448 5.0186 18 6 3.3568 7.6200 5.9201 19 1 2.9000 8.5332 5.5683 20 6 3.0928 7.1633 7.1939 21 7 3.6487 6.0510 7.6221 22 14 1.9444 8.1238 8.3112 23 1 0.5518 7.6452 8.1189 24 1 2.3465 7.9212 9.7263 25 1 2.0219 9.5685 7.9766 26 6 4.4033 7.5630 3.6725 27 6 5.3718 6.7908 2.7712 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.5480 2.1631 -1.3769 34 1 2.0347 3.1406 -1.3257 35 1 2.0345 1.5635 -2.1509 36 1 3.8554 0.9123 1.0316 37 1 4.0015 0.9499 -0.7420 38 1 3.9493 3.0704 -1.8861 39 1 4.1654 4.5740 -0.9582 40 1 6.2369 2.3719 -1.3686 41 1 6.2738 4.0096 -2.0649 42 1 6.4617 3.7846 -0.3093 43 1 4.2322 3.6778 3.6708 44 1 5.6201 4.4932 4.4364 45 1 3.6139 4.9355 5.7610 46 1 2.7480 5.5063 4.3141 47 1 5.2668 6.7751 5.4823 48 1 3.4632 5.7299 8.5185 49 1 4.7811 8.5730 3.8316 50 1 3.4238 7.6117 3.1967 51 1 6.3729 6.8191 3.2015 52 1 5.3879 7.2407 1.7785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348355341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:22 Heat of formation + Delta-G solvation = -64.294059 kcal Electronic energy + Delta-G solvation = -29557.039106 eV Core-core repulsion = 25749.971040 eV Total energy + Delta-G solvation = -3807.068066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.92586 -38.80113 -37.42828 -36.90143 -35.22663 -33.38841 -31.20232 -31.07055 -30.01181 -29.73052 -27.43946 -26.40070 -24.86285 -23.47413 -23.17377 -22.36467 -21.42454 -20.32792 -19.48129 -18.55775 -16.95155 -16.74984 -16.36889 -16.03912 -15.60674 -15.44728 -14.90182 -14.68815 -14.51075 -14.06495 -14.01574 -13.59812 -13.39742 -13.10695 -12.92949 -12.83049 -12.79944 -12.66287 -12.36657 -12.25490 -12.06947 -11.85375 -11.65022 -11.45092 -11.41497 -11.28109 -11.02583 -10.91418 -10.82345 -10.73806 -10.68743 -10.40957 -10.25768 -10.02709 -9.56956 -9.16199 -9.09100 -8.82906 -8.44200 -8.26119 -8.02957 -5.97969 -4.04475 1.65851 2.49938 3.31214 3.38066 3.40930 3.44728 3.63731 4.42722 4.44384 4.60691 4.66788 4.75713 4.95244 5.05229 5.23715 5.26801 5.31758 5.33814 5.38187 5.45984 5.54238 5.58745 5.65212 5.67017 5.75715 5.82289 5.85505 5.87344 5.90129 5.94655 6.03104 6.10990 6.16516 6.18762 6.21232 6.28194 6.37258 6.50691 6.64788 6.77259 6.82209 7.01244 7.15154 7.21636 7.34326 7.70357 7.82964 7.94225 8.00067 8.12395 8.31291 8.45256 8.98665 9.60225 11.07388 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003403 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.125566 B = 8226.015621 C = 9581.363419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.115 4.115 3 C -0.111 4.111 4 H 0.079 0.921 5 C -0.150 4.150 6 C 0.119 3.881 7 N -0.585 5.585 8 C 0.093 3.907 9 C -0.157 4.157 10 C 0.508 3.492 11 O -0.501 6.501 12 C 0.499 3.501 13 O -0.537 6.537 14 N -0.560 5.560 15 C 0.044 3.956 16 C -0.117 4.117 17 C 0.046 3.954 18 C -0.513 4.513 19 H 0.054 0.946 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.890 3.110 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C -0.122 4.122 27 C 0.108 3.892 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.141 0.859 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.036 0.964 47 H 0.026 0.974 48 H 0.260 0.740 49 H 0.062 0.938 50 H 0.052 0.948 51 H 0.065 0.935 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.371 -11.067 -18.435 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.130 4.130 4 H 0.098 0.902 5 C -0.207 4.207 6 C -0.004 4.004 7 N -0.318 5.318 8 C -0.029 4.029 9 C -0.215 4.215 10 C 0.293 3.707 11 O -0.377 6.377 12 C 0.281 3.719 13 O -0.418 6.418 14 N -0.290 5.290 15 C -0.076 4.076 16 C -0.155 4.155 17 C 0.027 3.973 18 C -0.551 4.551 19 H 0.072 0.928 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.718 3.282 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.160 4.160 27 C -0.014 4.014 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.130 0.870 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.157 0.843 44 H 0.073 0.927 45 H 0.122 0.878 46 H 0.054 0.946 47 H 0.045 0.955 48 H 0.070 0.930 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.083 0.917 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.337 -11.146 -18.243 21.381 hybrid contribution -0.595 0.562 0.779 1.130 sum -0.258 -10.584 -17.464 20.423 Atomic orbital electron populations 1.21798 0.95695 1.01437 1.02089 1.21483 0.96193 0.95697 1.01955 1.21576 0.95300 0.96824 0.99329 0.90225 1.21957 1.01462 1.00734 0.96553 1.21641 0.93892 0.81712 1.03114 1.47904 1.63031 1.13928 1.06914 1.22161 0.95591 1.00033 0.85065 1.22065 0.96049 1.00691 1.02730 1.20453 0.79830 0.87043 0.83417 1.90379 1.47192 1.66739 1.33376 1.19850 0.80736 0.86954 0.84338 1.90609 1.52070 1.65098 1.33982 1.48248 1.61312 1.13492 1.05994 1.23408 1.01036 0.99570 0.83626 1.21840 0.95790 0.98361 0.99518 1.18688 0.96919 0.91802 0.89862 1.21189 1.27641 1.08368 0.97906 0.92785 1.24958 0.96004 0.95063 0.97918 1.69847 1.43807 1.21188 1.18017 0.86628 0.81179 0.80403 0.79974 1.20746 1.21265 1.20003 1.22011 0.97599 0.98530 0.97900 1.21868 0.98189 0.80295 1.01032 0.92547 0.92600 0.92898 0.92072 0.91707 0.92486 0.92286 0.92860 0.89808 0.90245 0.90884 0.87025 0.93535 0.91659 0.92078 0.84256 0.92680 0.87811 0.94553 0.95541 0.92994 0.91945 0.92956 0.91688 0.90207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.12 -0.94 5.40 -26.73 -0.14 -1.08 16 3 C -0.11 -1.08 2.60 -90.61 -0.24 -1.32 16 4 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 5 C -0.15 -1.30 7.97 37.16 0.30 -1.00 16 6 C 0.12 1.20 4.80 -4.04 -0.02 1.18 16 7 N -0.58 -7.22 2.22 -174.19 -0.39 -7.61 16 8 C 0.09 1.01 4.49 -4.04 -0.02 0.99 16 9 C -0.16 -1.64 9.58 37.16 0.36 -1.28 16 10 C 0.51 8.11 7.56 -11.58 -0.09 8.02 16 11 O -0.50 -8.99 12.77 5.50 0.07 -8.92 16 12 C 0.50 8.69 7.27 -11.59 -0.08 8.60 16 13 O -0.54 -9.24 11.26 5.49 0.06 -9.18 16 14 N -0.56 -10.52 2.98 -173.54 -0.52 -11.03 16 15 C 0.04 0.88 6.25 -3.94 -0.02 0.86 16 16 C -0.12 -2.77 5.14 -26.84 -0.14 -2.91 16 17 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 18 C -0.51 -13.98 8.56 -34.44 -0.29 -14.28 16 19 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -25.13 11.30 55.43 0.63 -24.50 16 22 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.12 -2.53 5.30 -26.61 -0.14 -2.67 16 27 C 0.11 1.97 6.42 -3.71 -0.02 1.94 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.42 6.62 -51.93 -0.34 0.08 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.48 6.68 -51.93 -0.35 0.13 16 34 H 0.06 0.57 6.03 -51.93 -0.31 0.26 16 35 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.93 7.58 -51.93 -0.39 0.54 16 37 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 38 H 0.07 0.61 6.57 -51.93 -0.34 0.27 16 39 H 0.11 1.43 5.61 -51.93 -0.29 1.14 16 40 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.79 6.77 -51.93 -0.35 0.44 16 43 H 0.14 2.81 3.76 -56.86 -0.21 2.60 16 44 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 45 H 0.10 2.74 6.03 -51.92 -0.31 2.43 16 46 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 52 H 0.08 1.37 7.05 -51.93 -0.37 1.00 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -28.91 390.54 -8.92 -37.82 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -9.15 Total: 2.56 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -0.48 Total: -1.28 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: -0.28 Total: -43.14 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.13 Total: -18.09 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -28.91 -8.92 -37.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348355341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.471 kcal (2) G-P(sol) polarization free energy of solvation -28.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds