Wall clock time and date at job start Tue Mar 31 2020 15:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47022 * 2 1 4 4 H 1.08993 * 109.46720 * 55.00017 * 3 2 1 5 5 C 1.53005 * 109.47067 * 294.99995 * 3 2 1 6 6 C 1.52997 * 109.46922 * 175.00255 * 3 2 1 7 7 N 1.46505 * 109.46862 * 182.86977 * 6 3 2 8 8 C 1.46498 * 119.99855 * 267.33512 * 7 6 3 9 9 C 1.52998 * 109.47216 * 263.87796 * 8 7 6 10 10 C 1.34777 * 119.99693 * 87.33702 * 7 6 3 11 11 O 1.21346 * 120.00042 * 355.00088 * 10 7 6 12 12 C 1.49453 * 119.99739 * 174.99835 * 10 7 6 13 13 O 1.21354 * 120.00098 * 6.63206 * 12 10 7 14 14 N 1.34773 * 119.99820 * 186.63608 * 12 10 7 15 15 C 1.46923 * 120.63543 * 6.05244 * 14 12 10 16 16 C 1.52756 * 109.01107 * 233.58739 * 15 14 12 17 17 C 1.53038 * 109.38128 * 305.58450 * 16 15 14 18 18 C 1.50705 * 109.44953 * 181.25360 * 17 16 15 19 19 H 1.08001 * 120.00083 * 239.94203 * 18 17 16 20 20 C 1.37875 * 119.99709 * 59.93915 * 18 17 16 21 21 N 1.31510 * 120.00327 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99726 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47333 * 89.99928 * 22 20 18 24 24 H 1.48504 * 109.47265 * 209.99956 * 22 20 18 25 25 H 1.48501 * 109.47377 * 329.99910 * 22 20 18 26 26 C 1.53045 * 109.53953 * 61.24067 * 17 16 15 27 27 C 1.46930 * 120.63045 * 186.33319 * 14 12 10 28 28 H 1.08993 * 109.46874 * 299.99916 * 1 2 3 29 29 H 1.09003 * 109.46915 * 59.99883 * 1 2 3 30 30 H 1.08998 * 109.46941 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47058 * 240.00191 * 2 1 3 32 32 H 1.08992 * 109.47388 * 120.00091 * 2 1 3 33 33 H 1.09006 * 109.47004 * 62.38568 * 5 3 2 34 34 H 1.08993 * 109.47013 * 182.38504 * 5 3 2 35 35 H 1.08996 * 109.47184 * 302.38769 * 5 3 2 36 36 H 1.09002 * 109.47250 * 302.87080 * 6 3 2 37 37 H 1.08994 * 109.47548 * 62.87265 * 6 3 2 38 38 H 1.08999 * 109.46952 * 23.88198 * 8 7 6 39 39 H 1.09007 * 109.46645 * 143.88286 * 8 7 6 40 40 H 1.09001 * 109.46954 * 65.15679 * 9 8 7 41 41 H 1.08995 * 109.47046 * 185.15484 * 9 8 7 42 42 H 1.08998 * 109.47235 * 305.15903 * 9 8 7 43 43 H 1.09007 * 109.58566 * 353.42243 * 15 14 12 44 44 H 1.09001 * 109.59123 * 113.84156 * 15 14 12 45 45 H 1.09008 * 109.56619 * 185.54751 * 16 15 14 46 46 H 1.09001 * 109.38779 * 65.51331 * 16 15 14 47 47 H 1.09002 * 109.46077 * 301.21758 * 17 16 15 48 48 H 0.97000 * 120.00092 * 179.97438 * 21 20 18 49 49 H 1.08999 * 109.49728 * 178.68135 * 26 17 16 50 50 H 1.09000 * 109.51979 * 58.60019 * 26 17 16 51 51 H 1.09005 * 109.58486 * 246.15692 * 27 14 12 52 52 H 1.09001 * 109.58318 * 6.43884 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 3.5648 1.4444 0.1257 7 7 4.0475 2.8259 0.1946 8 6 4.4483 3.5237 -1.0296 9 6 5.9641 3.4146 -1.2058 10 6 4.1227 3.4548 1.3843 11 8 3.7064 2.9105 2.3857 12 6 4.7189 4.8226 1.4700 13 8 5.0246 5.4159 0.4565 14 7 4.9171 5.3971 2.6730 15 6 4.6768 4.6436 3.9112 16 6 3.7215 5.4380 4.7997 17 6 4.2828 6.8448 5.0186 18 6 3.3568 7.6200 5.9201 19 1 2.9000 8.5332 5.5683 20 6 3.0928 7.1633 7.1939 21 7 3.6487 6.0510 7.6221 22 14 1.9444 8.1238 8.3112 23 1 0.5518 7.6452 8.1189 24 1 2.3465 7.9212 9.7263 25 1 2.0219 9.5685 7.9766 26 6 4.4033 7.5630 3.6725 27 6 5.3718 6.7908 2.7712 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.5480 2.1631 -1.3769 34 1 2.0347 3.1406 -1.3257 35 1 2.0345 1.5635 -2.1509 36 1 3.8554 0.9123 1.0316 37 1 4.0015 0.9499 -0.7420 38 1 3.9493 3.0704 -1.8861 39 1 4.1654 4.5740 -0.9582 40 1 6.2369 2.3719 -1.3686 41 1 6.2738 4.0096 -2.0649 42 1 6.4617 3.7846 -0.3093 43 1 4.2322 3.6778 3.6708 44 1 5.6201 4.4932 4.4364 45 1 3.6139 4.9355 5.7610 46 1 2.7480 5.5063 4.3141 47 1 5.2668 6.7751 5.4823 48 1 3.4632 5.7299 8.5185 49 1 4.7811 8.5730 3.8316 50 1 3.4238 7.6117 3.1967 51 1 6.3729 6.8191 3.2015 52 1 5.3879 7.2407 1.7785 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348355341.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:21 Heat of formation + Delta-G solvation = -79.029764 kcal Electronic energy + Delta-G solvation = -29557.678094 eV Core-core repulsion = 25749.971040 eV Total energy + Delta-G solvation = -3807.707054 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.21219 -40.10527 -38.79206 -38.12159 -36.25394 -35.19712 -33.02090 -32.00459 -31.64064 -30.56565 -28.61189 -27.87793 -26.16917 -24.61644 -24.30162 -24.03514 -22.83347 -21.27804 -20.80588 -20.02857 -18.51133 -18.13765 -17.96742 -17.31525 -16.92716 -16.47749 -16.36937 -16.01330 -15.65275 -15.42054 -15.13684 -14.87310 -14.60396 -14.53929 -14.47266 -14.21951 -13.91362 -13.70624 -13.62202 -13.34236 -13.21270 -13.06710 -12.81957 -12.77074 -12.66851 -12.50261 -12.22185 -12.17353 -12.14228 -12.08528 -11.93449 -11.72346 -11.55283 -11.42688 -11.36349 -11.02740 -10.82723 -10.45183 -9.95280 -9.77075 -9.59683 -8.08051 -6.22361 0.33518 1.30389 1.40502 1.41598 1.51276 2.11348 2.37953 2.43206 3.10575 3.18238 3.82954 3.91772 4.01284 4.09704 4.15583 4.27404 4.33136 4.35507 4.41278 4.48222 4.52357 4.55160 4.63005 4.65424 4.72233 4.76637 4.79162 4.81358 4.86390 4.91311 5.00429 5.07704 5.12337 5.14428 5.17567 5.19193 5.20431 5.24463 5.33632 5.42044 5.44537 5.48441 5.53141 5.61436 5.65157 5.95906 5.98389 6.10119 6.30410 6.37323 6.67973 6.87974 6.95275 7.45419 8.95550 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013885 B = 0.003403 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.125566 B = 8226.015621 C = 9581.363419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.107 4.107 4 H 0.042 0.958 5 C -0.147 4.147 6 C 0.115 3.885 7 N -0.569 5.569 8 C 0.091 3.909 9 C -0.153 4.153 10 C 0.503 3.497 11 O -0.529 6.529 12 C 0.498 3.502 13 O -0.532 6.532 14 N -0.571 5.571 15 C 0.059 3.941 16 C -0.105 4.105 17 C 0.043 3.957 18 C -0.535 4.535 19 H 0.050 0.950 20 C 0.014 3.986 21 N -0.914 5.914 22 Si 0.952 3.048 23 H -0.279 1.279 24 H -0.282 1.282 25 H -0.268 1.268 26 C -0.113 4.113 27 C 0.114 3.886 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.047 0.953 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.032 0.968 43 H 0.146 0.854 44 H 0.053 0.947 45 H 0.073 0.927 46 H 0.018 0.982 47 H 0.002 0.998 48 H 0.261 0.739 49 H 0.072 0.928 50 H 0.043 0.957 51 H 0.075 0.925 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.416 -11.871 -21.049 24.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.127 4.127 4 H 0.061 0.939 5 C -0.204 4.204 6 C -0.006 4.006 7 N -0.301 5.301 8 C -0.030 4.030 9 C -0.211 4.211 10 C 0.287 3.713 11 O -0.408 6.408 12 C 0.282 3.718 13 O -0.411 6.411 14 N -0.302 5.302 15 C -0.062 4.062 16 C -0.144 4.144 17 C 0.025 3.975 18 C -0.573 4.573 19 H 0.069 0.931 20 C -0.185 4.185 21 N -0.553 5.553 22 Si 0.778 3.222 23 H -0.205 1.205 24 H -0.208 1.208 25 H -0.193 1.193 26 C -0.151 4.151 27 C -0.007 4.007 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.110 0.890 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.162 0.838 44 H 0.072 0.928 45 H 0.092 0.908 46 H 0.037 0.963 47 H 0.020 0.980 48 H 0.070 0.930 49 H 0.090 0.910 50 H 0.061 0.939 51 H 0.093 0.907 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.389 -11.949 -20.922 24.097 hybrid contribution -0.623 0.788 1.489 1.796 sum -0.233 -11.161 -19.432 22.411 Atomic orbital electron populations 1.21804 0.95734 1.01983 1.01549 1.21464 0.96129 0.94531 1.02779 1.21512 0.94792 0.97704 0.98702 0.93911 1.21938 1.01658 1.00257 0.96530 1.21888 0.94301 0.80201 1.04213 1.48013 1.61230 1.14616 1.06201 1.22277 0.96389 0.99149 0.85160 1.22022 0.95102 1.02035 1.01903 1.20252 0.80132 0.86586 0.84371 1.90341 1.48852 1.67043 1.34554 1.20153 0.80251 0.87654 0.83782 1.90616 1.51538 1.65365 1.33574 1.48210 1.62387 1.13702 1.05948 1.23133 0.99946 0.99336 0.83761 1.21594 0.95844 0.98348 0.98601 1.18649 0.95000 0.92428 0.91438 1.21560 1.28274 1.08643 0.98857 0.93127 1.25711 0.97451 0.95962 0.99354 1.69982 1.44786 1.22286 1.18280 0.85653 0.79135 0.79299 0.78134 1.20473 1.20776 1.19301 1.21854 0.98021 0.99043 0.96192 1.21807 0.97771 0.79940 1.01224 0.94336 0.91929 0.91808 0.89741 0.92328 0.92450 0.93388 0.90373 0.90941 0.86603 0.87458 0.89044 0.91661 0.90322 0.94891 0.83767 0.92813 0.90837 0.96293 0.97959 0.92995 0.90965 0.93852 0.90687 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.67 71.98 0.70 -1.56 16 2 C -0.11 -1.59 5.40 30.60 0.17 -1.42 16 3 C -0.11 -1.94 2.60 -10.79 -0.03 -1.97 16 4 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 5 C -0.15 -2.16 7.97 71.98 0.57 -1.58 16 6 C 0.12 2.08 4.80 86.38 0.41 2.49 16 7 N -0.57 -13.17 2.22 -823.39 -1.83 -15.00 16 8 C 0.09 1.73 4.49 86.38 0.39 2.12 16 9 C -0.15 -2.76 9.58 71.98 0.69 -2.07 16 10 C 0.50 15.97 7.56 87.27 0.66 16.63 16 11 O -0.53 -19.42 12.77 -3.23 -0.04 -19.46 16 12 C 0.50 17.19 7.27 87.27 0.63 17.83 16 13 O -0.53 -17.70 11.26 -3.26 -0.04 -17.74 16 14 N -0.57 -21.57 2.98 -821.31 -2.45 -24.01 16 15 C 0.06 2.46 6.25 86.22 0.54 3.00 16 16 C -0.11 -5.22 5.14 30.53 0.16 -5.06 16 17 C 0.04 2.20 2.07 -11.51 -0.02 2.18 16 18 C -0.54 -29.92 8.56 25.60 0.22 -29.70 16 19 H 0.05 2.79 7.74 -2.91 -0.02 2.76 16 20 C 0.01 0.78 5.30 84.65 0.45 1.23 16 21 N -0.91 -53.11 11.30 21.45 0.24 -52.87 16 22 Si 0.95 44.22 29.54 68.60 2.03 46.25 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 C -0.11 -4.72 5.30 30.67 0.16 -4.56 16 27 C 0.11 4.11 6.42 86.36 0.55 4.66 16 28 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.83 6.62 -2.39 -0.02 0.81 16 30 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.06 0.85 6.68 -2.38 -0.02 0.83 16 34 H 0.05 0.81 6.03 -2.39 -0.01 0.80 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 1.52 7.58 -2.39 -0.02 1.51 16 37 H 0.12 1.30 8.05 -2.39 -0.02 1.28 16 38 H 0.11 1.35 6.57 -2.39 -0.02 1.34 16 39 H 0.09 2.18 5.61 -2.38 -0.01 2.16 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.03 0.79 6.77 -2.39 -0.02 0.77 16 43 H 0.15 6.04 3.76 -80.51 -0.30 5.73 16 44 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.07 4.09 6.03 -2.38 -0.01 4.08 16 46 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 48 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 49 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 50 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 52 H 0.10 3.16 7.05 -2.39 -0.02 3.14 16 Total: -1.00 -64.46 390.54 4.76 -59.70 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.59 Total: 20.92 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 6.25 Total: 2.21 kcal Atomic # 7 Polarization: -87.85 SS G_CDS: -4.03 Total: -91.88 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.08 Total: -37.19 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -64.46 4.76 -59.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348355341.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.333 kcal (2) G-P(sol) polarization free energy of solvation -64.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds