Wall clock time and date at job start Tue Mar 31 2020 14:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46471 * 2 1 4 4 H 1.08994 * 109.50100 * 54.93839 * 3 2 1 5 5 C 1.52759 * 109.59109 * 294.97866 * 3 2 1 6 6 N 1.46931 * 109.00493 * 185.54093 * 5 3 2 7 7 C 1.34776 * 120.62741 * 233.58721 * 6 5 3 8 8 O 1.21286 * 120.00354 * 359.71793 * 7 6 5 9 9 C 1.50703 * 119.99807 * 179.72074 * 7 6 5 10 10 C 1.53002 * 109.46939 * 185.87955 * 9 7 6 11 11 C 1.52996 * 115.56653 * 279.44291 * 10 9 7 12 12 O 1.42902 * 109.47021 * 320.91506 * 11 10 9 13 13 C 1.42901 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49648 * 65.13811 * 10 9 7 15 15 C 1.52996 * 60.03206 * 107.49817 * 14 10 9 16 16 C 1.46918 * 118.73878 * 53.31147 * 6 5 3 17 17 C 1.53185 * 108.78031 * 306.64272 * 16 6 5 18 18 C 1.53044 * 109.31359 * 54.63371 * 17 16 6 19 19 H 1.08997 * 109.45656 * 58.65250 * 18 17 16 20 20 N 1.46494 * 109.46265 * 178.63284 * 18 17 16 21 21 C 1.36938 * 119.99771 * 274.99880 * 20 18 17 22 22 H 1.08000 * 120.00199 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00193 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99780 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00339 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47315 * 59.99506 * 25 23 21 27 27 H 1.48496 * 109.47404 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46797 * 299.99581 * 25 23 21 29 29 H 1.08997 * 109.46976 * 59.99898 * 1 2 3 30 30 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47126 * 299.99753 * 1 2 3 32 32 H 1.08995 * 109.47126 * 240.00247 * 2 1 3 33 33 H 1.08997 * 109.46976 * 120.00102 * 2 1 3 34 34 H 1.09000 * 109.50866 * 65.66579 * 5 3 2 35 35 H 1.08993 * 109.43705 * 305.37851 * 5 3 2 36 36 H 1.09003 * 109.46830 * 65.88298 * 9 7 6 37 37 H 1.08994 * 109.47342 * 305.88211 * 9 7 6 38 38 H 1.09001 * 109.47085 * 80.91139 * 11 10 9 39 39 H 1.08997 * 109.47758 * 200.91523 * 11 10 9 40 40 H 1.08995 * 109.47340 * 299.99223 * 13 12 11 41 41 H 1.08995 * 109.47203 * 59.99849 * 13 12 11 42 42 H 1.09003 * 109.46783 * 179.97438 * 13 12 11 43 43 H 1.08997 * 117.49757 * 359.97438 * 14 10 9 44 44 H 1.09004 * 117.49603 * 215.00121 * 14 10 9 45 45 H 1.09001 * 117.50134 * 107.47811 * 15 14 10 46 46 H 1.09002 * 117.49580 * 252.47303 * 15 14 10 47 47 H 1.09006 * 109.58914 * 66.43385 * 16 6 5 48 48 H 1.09006 * 109.59006 * 186.85628 * 16 6 5 49 49 H 1.08997 * 109.50233 * 174.58647 * 17 16 6 50 50 H 1.09005 * 109.49951 * 294.65435 * 17 16 6 51 51 H 0.96996 * 120.00739 * 95.00250 * 20 18 17 52 52 H 0.97006 * 119.99884 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6376 2.1280 -1.3045 6 7 2.2450 3.4652 -1.3495 7 6 1.4854 4.5574 -1.5654 8 8 0.2893 4.4415 -1.7299 9 6 2.1222 5.9227 -1.6025 10 6 1.0325 6.9909 -1.7145 11 6 0.4747 7.2201 -3.1206 12 8 1.5381 7.1483 -4.0725 13 6 1.1223 7.3492 -5.4248 14 6 0.0657 7.1398 -0.5380 15 6 1.1348 8.2052 -0.7883 16 6 3.6950 3.5896 -1.1486 17 6 4.0736 2.8883 0.1596 18 6 3.5653 1.4451 0.1257 19 1 4.0008 0.9267 -0.7284 20 7 3.9539 0.7616 1.3618 21 6 5.1916 0.1847 1.4650 22 1 5.8813 0.2339 0.6353 23 6 5.5598 -0.4635 2.6360 24 7 4.7195 -0.5231 3.6472 25 14 7.2483 -1.2499 2.7771 26 1 8.2946 -0.2114 2.5976 27 1 7.3941 -1.8723 4.1174 28 1 7.3988 -2.2906 1.7285 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5523 2.2180 -1.3488 35 1 1.9921 1.5371 -2.1490 36 1 2.7870 5.9902 -2.4637 37 1 2.6943 6.0818 -0.6885 38 1 -0.2673 6.4542 -3.3465 39 1 0.0082 8.2039 -3.1706 40 1 0.3940 6.5858 -5.6982 41 1 0.6689 8.3355 -5.5228 42 1 1.9870 7.2799 -6.0849 43 1 0.2058 6.4766 0.3155 44 1 -0.9678 7.4007 -0.7658 45 1 0.8048 9.1670 -1.1811 46 1 1.9783 8.2435 -0.0989 47 1 4.2208 3.1203 -1.9802 48 1 3.9668 4.6436 -1.0900 49 1 5.1576 2.8896 0.2727 50 1 3.6196 3.4147 0.9992 51 1 3.3347 0.7175 2.1071 52 1 4.9766 -0.9764 4.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754464826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:35 Heat of formation + Delta-G solvation = -54.810096 kcal Electronic energy + Delta-G solvation = -29093.687936 eV Core-core repulsion = 25287.031126 eV Total energy + Delta-G solvation = -3806.656811 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.31418 -38.84916 -37.57755 -36.63985 -34.65200 -33.77731 -31.68947 -30.17020 -29.44692 -28.53652 -27.78576 -25.68119 -24.82931 -23.79606 -22.76677 -22.52624 -20.80455 -20.33631 -19.42701 -18.47530 -17.11598 -16.88803 -16.61746 -16.21782 -15.93430 -15.57452 -14.96829 -14.87146 -14.46166 -14.04496 -13.93062 -13.66942 -13.53384 -13.31278 -13.15335 -13.07569 -12.73089 -12.61443 -12.19492 -11.93907 -11.90925 -11.74533 -11.58556 -11.55785 -11.26309 -11.13495 -10.91003 -10.83518 -10.65896 -10.50296 -10.31955 -10.22531 -10.20655 -10.13407 -9.82021 -9.71509 -9.56844 -9.35049 -8.88712 -8.36673 -6.96164 -5.77529 -3.06114 2.84507 3.10927 3.42483 3.45925 3.47443 3.48204 3.77123 4.51103 4.57455 4.62236 4.73531 4.80699 4.93745 5.05149 5.08951 5.14020 5.26873 5.27872 5.31492 5.40631 5.41482 5.43287 5.49014 5.52177 5.59778 5.62977 5.65459 5.72083 5.74789 5.76950 5.84139 5.92048 5.95767 6.02013 6.06348 6.16507 6.19020 6.35583 6.38727 6.43136 6.49104 6.62171 6.72162 6.85871 6.95355 6.98791 7.08326 7.63987 7.68224 8.39102 8.40810 9.52122 10.09903 10.44821 11.44864 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.002907 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.408390 B = 9628.394405 C =10131.549689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.068 0.932 5 C 0.120 3.880 6 N -0.608 5.608 7 C 0.518 3.482 8 O -0.546 6.546 9 C -0.100 4.100 10 C -0.105 4.105 11 C 0.102 3.898 12 O -0.388 6.388 13 C 0.033 3.967 14 C -0.149 4.149 15 C -0.174 4.174 16 C 0.106 3.894 17 C -0.152 4.152 18 C 0.184 3.816 19 H 0.047 0.953 20 N -0.720 5.720 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.286 1.286 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.062 0.938 39 H 0.047 0.953 40 H 0.040 0.960 41 H 0.038 0.962 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.097 0.903 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.384 0.616 52 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.350 15.567 -14.140 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.086 0.914 5 C -0.002 4.002 6 N -0.341 5.341 7 C 0.306 3.694 8 O -0.424 6.424 9 C -0.140 4.140 10 C -0.105 4.105 11 C 0.026 3.974 12 O -0.307 6.307 13 C -0.064 4.064 14 C -0.186 4.186 15 C -0.211 4.211 16 C -0.017 4.017 17 C -0.193 4.193 18 C 0.073 3.927 19 H 0.065 0.935 20 N -0.360 5.360 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.103 0.897 43 H 0.116 0.884 44 H 0.113 0.887 45 H 0.113 0.887 46 H 0.115 0.885 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.094 0.906 50 H 0.077 0.923 51 H 0.218 0.782 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.616 15.372 -14.177 22.617 hybrid contribution 0.673 -0.403 0.352 0.860 sum -7.943 14.968 -13.825 21.870 Atomic orbital electron populations 1.21839 0.96850 1.00974 1.01275 1.21449 0.94341 0.95768 1.03409 1.21694 0.97614 0.96203 0.96892 0.91352 1.21606 0.99340 0.81721 0.97582 1.48176 1.08467 1.06773 1.70725 1.20555 0.86919 0.85978 0.75926 1.90633 1.14890 1.86662 1.50236 1.21142 0.97803 0.90527 1.04510 1.20915 1.00608 0.98062 0.90957 1.21951 0.89181 0.99678 0.86602 1.87828 1.33915 1.93304 1.15670 1.22707 1.00899 0.99445 0.83313 1.22890 0.95595 1.01377 0.98778 1.23250 1.01933 0.93463 1.02469 1.21865 0.79613 1.01147 0.99065 1.22681 1.02148 0.99285 0.95178 1.20179 0.90819 0.90529 0.91128 0.93487 1.42404 1.16464 1.64437 1.12742 1.19170 0.91829 1.27334 0.98587 0.91310 1.24722 0.98110 1.01567 0.96451 1.69650 1.35293 1.48350 1.04769 0.86306 0.84184 0.79189 0.76716 1.21338 1.21778 1.21323 0.93242 0.93217 0.93026 0.92511 0.89831 0.89285 0.92006 0.87474 0.89053 0.92024 0.93457 0.94098 0.94303 0.89675 0.88436 0.88737 0.88722 0.88485 0.91556 0.90476 0.90631 0.92273 0.78222 0.93490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.16 0.36 -1.79 16 2 C -0.11 -1.83 5.31 -26.72 -0.14 -1.97 16 3 C -0.10 -1.72 1.91 -90.72 -0.17 -1.90 16 4 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 5 C 0.12 1.79 5.30 -3.93 -0.02 1.77 16 6 N -0.61 -8.71 2.98 -173.03 -0.52 -9.23 16 7 C 0.52 7.51 7.55 -10.98 -0.08 7.43 16 8 O -0.55 -9.29 14.56 5.55 0.08 -9.21 16 9 C -0.10 -1.17 3.96 -27.88 -0.11 -1.28 16 10 C -0.10 -1.16 1.44 -154.47 -0.22 -1.38 16 11 C 0.10 1.10 5.89 37.16 0.22 1.32 16 12 O -0.39 -4.34 9.47 -35.23 -0.33 -4.67 16 13 C 0.03 0.27 11.01 101.05 1.11 1.38 16 14 C -0.15 -1.59 9.19 -26.73 -0.25 -1.83 16 15 C -0.17 -1.59 9.83 -26.69 -0.26 -1.85 16 16 C 0.11 1.40 6.34 -3.72 -0.02 1.38 16 17 C -0.15 -2.51 5.66 -26.61 -0.15 -2.66 16 18 C 0.18 3.45 2.20 -67.89 -0.15 3.30 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.50 16 20 N -0.72 -17.14 4.33 -53.38 -0.23 -17.37 16 21 C -0.24 -6.33 9.93 -15.06 -0.15 -6.48 16 22 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.57 13.06 55.49 0.72 -26.85 16 25 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 26 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 29 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.63 7.21 -51.93 -0.37 1.26 16 34 H 0.09 1.39 5.72 -51.93 -0.30 1.09 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.11 1.22 7.08 -51.93 -0.37 0.85 16 37 H 0.09 0.96 7.19 -51.93 -0.37 0.59 16 38 H 0.06 0.74 7.85 -51.93 -0.41 0.34 16 39 H 0.05 0.43 7.94 -51.93 -0.41 0.02 16 40 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 42 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 45 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 46 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 47 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.08 0.85 5.88 -51.93 -0.31 0.54 16 49 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 50 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 51 H 0.38 9.90 7.51 -40.82 -0.31 9.59 16 52 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 405.29 15.07 6.11 6.11 Total: -1.00 -30.65 405.29 -8.82 -39.47 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -9.49 Total: 9.81 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.14 Total: -5.01 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.02 Total: -53.45 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.25 Total: -13.88 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.65 -8.82 -39.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754464826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.340 kcal (2) G-P(sol) polarization free energy of solvation -30.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds