Wall clock time and date at job start Tue Mar 31 2020 14:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53002 * 109.46471 * 2 1 4 4 H 1.08994 * 109.50100 * 54.93839 * 3 2 1 5 5 C 1.52759 * 109.59109 * 294.97866 * 3 2 1 6 6 N 1.46931 * 109.00493 * 185.54093 * 5 3 2 7 7 C 1.34776 * 120.62741 * 233.58721 * 6 5 3 8 8 O 1.21286 * 120.00354 * 359.71793 * 7 6 5 9 9 C 1.50703 * 119.99807 * 179.72074 * 7 6 5 10 10 C 1.53002 * 109.46939 * 185.87955 * 9 7 6 11 11 C 1.52996 * 115.56653 * 279.44291 * 10 9 7 12 12 O 1.42902 * 109.47021 * 320.91506 * 11 10 9 13 13 C 1.42901 * 113.99912 * 179.97438 * 12 11 10 14 14 C 1.53005 * 117.49648 * 65.13811 * 10 9 7 15 15 C 1.52996 * 60.03206 * 107.49817 * 14 10 9 16 16 C 1.46918 * 118.73878 * 53.31147 * 6 5 3 17 17 C 1.53185 * 108.78031 * 306.64272 * 16 6 5 18 18 C 1.53044 * 109.31359 * 54.63371 * 17 16 6 19 19 H 1.08997 * 109.45656 * 58.65250 * 18 17 16 20 20 N 1.46494 * 109.46265 * 178.63284 * 18 17 16 21 21 C 1.36938 * 119.99771 * 274.99880 * 20 18 17 22 22 H 1.08000 * 120.00199 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00193 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99780 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00339 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47315 * 59.99506 * 25 23 21 27 27 H 1.48496 * 109.47404 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46797 * 299.99581 * 25 23 21 29 29 H 1.08997 * 109.46976 * 59.99898 * 1 2 3 30 30 H 1.09000 * 109.46664 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47126 * 299.99753 * 1 2 3 32 32 H 1.08995 * 109.47126 * 240.00247 * 2 1 3 33 33 H 1.08997 * 109.46976 * 120.00102 * 2 1 3 34 34 H 1.09000 * 109.50866 * 65.66579 * 5 3 2 35 35 H 1.08993 * 109.43705 * 305.37851 * 5 3 2 36 36 H 1.09003 * 109.46830 * 65.88298 * 9 7 6 37 37 H 1.08994 * 109.47342 * 305.88211 * 9 7 6 38 38 H 1.09001 * 109.47085 * 80.91139 * 11 10 9 39 39 H 1.08997 * 109.47758 * 200.91523 * 11 10 9 40 40 H 1.08995 * 109.47340 * 299.99223 * 13 12 11 41 41 H 1.08995 * 109.47203 * 59.99849 * 13 12 11 42 42 H 1.09003 * 109.46783 * 179.97438 * 13 12 11 43 43 H 1.08997 * 117.49757 * 359.97438 * 14 10 9 44 44 H 1.09004 * 117.49603 * 215.00121 * 14 10 9 45 45 H 1.09001 * 117.50134 * 107.47811 * 15 14 10 46 46 H 1.09002 * 117.49580 * 252.47303 * 15 14 10 47 47 H 1.09006 * 109.58914 * 66.43385 * 16 6 5 48 48 H 1.09006 * 109.59006 * 186.85628 * 16 6 5 49 49 H 1.08997 * 109.50233 * 174.58647 * 17 16 6 50 50 H 1.09005 * 109.49951 * 294.65435 * 17 16 6 51 51 H 0.96996 * 120.00739 * 95.00250 * 20 18 17 52 52 H 0.97006 * 119.99884 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6047 1.9823 0.8410 5 6 1.6376 2.1280 -1.3045 6 7 2.2450 3.4652 -1.3495 7 6 1.4854 4.5574 -1.5654 8 8 0.2893 4.4415 -1.7299 9 6 2.1222 5.9227 -1.6025 10 6 1.0325 6.9909 -1.7145 11 6 0.4747 7.2201 -3.1206 12 8 1.5381 7.1483 -4.0725 13 6 1.1223 7.3492 -5.4248 14 6 0.0657 7.1398 -0.5380 15 6 1.1348 8.2052 -0.7883 16 6 3.6950 3.5896 -1.1486 17 6 4.0736 2.8883 0.1596 18 6 3.5653 1.4451 0.1257 19 1 4.0008 0.9267 -0.7284 20 7 3.9539 0.7616 1.3618 21 6 5.1916 0.1847 1.4650 22 1 5.8813 0.2339 0.6353 23 6 5.5598 -0.4635 2.6360 24 7 4.7195 -0.5231 3.6472 25 14 7.2483 -1.2499 2.7771 26 1 8.2946 -0.2114 2.5976 27 1 7.3941 -1.8723 4.1174 28 1 7.3988 -2.2906 1.7285 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.5523 2.2180 -1.3488 35 1 1.9921 1.5371 -2.1490 36 1 2.7870 5.9902 -2.4637 37 1 2.6943 6.0818 -0.6885 38 1 -0.2673 6.4542 -3.3465 39 1 0.0082 8.2039 -3.1706 40 1 0.3940 6.5858 -5.6982 41 1 0.6689 8.3355 -5.5228 42 1 1.9870 7.2799 -6.0849 43 1 0.2058 6.4766 0.3155 44 1 -0.9678 7.4007 -0.7658 45 1 0.8048 9.1670 -1.1811 46 1 1.9783 8.2435 -0.0989 47 1 4.2208 3.1203 -1.9802 48 1 3.9668 4.6436 -1.0900 49 1 5.1576 2.8896 0.2727 50 1 3.6196 3.4147 0.9992 51 1 3.3347 0.7175 2.1071 52 1 4.9766 -0.9764 4.4654 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754464826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:24:34 Heat of formation + Delta-G solvation = -72.303869 kcal Electronic energy + Delta-G solvation = -29094.446523 eV Core-core repulsion = 25287.031126 eV Total energy + Delta-G solvation = -3807.415398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.44490 -39.86388 -38.72303 -37.48363 -36.12137 -35.33370 -33.42623 -31.24791 -31.02001 -29.59314 -28.74347 -26.54813 -26.29790 -25.10609 -24.35231 -23.30469 -22.20821 -21.49667 -20.68897 -19.53585 -19.01365 -18.07654 -17.45161 -17.05736 -16.81827 -16.66849 -16.63162 -16.00707 -15.63659 -15.50996 -15.22034 -14.98590 -14.72953 -14.55850 -14.40911 -14.33505 -13.95780 -13.62346 -13.39821 -13.13061 -13.02417 -12.95680 -12.79679 -12.65613 -12.52663 -12.49521 -12.32891 -12.20807 -12.09609 -11.90601 -11.80285 -11.56914 -11.51205 -11.31045 -11.07797 -11.03337 -10.86197 -10.66853 -10.31240 -9.58889 -8.94614 -7.89682 -5.17150 1.49183 1.51204 1.57049 1.71795 2.03355 2.59028 2.67951 2.98735 3.43284 3.64722 3.70676 3.77873 3.85835 3.92821 3.99726 4.04658 4.10535 4.13959 4.28520 4.35502 4.41424 4.44735 4.47347 4.51584 4.55665 4.62319 4.64673 4.76382 4.80001 4.81773 4.82637 4.85348 4.86852 4.90998 4.95101 5.02071 5.05807 5.07938 5.13753 5.18117 5.25743 5.30683 5.39153 5.48579 5.53014 5.59356 5.69470 6.23784 6.31481 6.50327 7.25495 7.38108 8.14427 8.37841 9.33667 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017034 B = 0.002907 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.408390 B = 9628.394405 C =10131.549689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C -0.091 4.091 4 H 0.050 0.950 5 C 0.127 3.873 6 N -0.611 5.611 7 C 0.514 3.486 8 O -0.574 6.574 9 C -0.095 4.095 10 C -0.122 4.122 11 C 0.106 3.894 12 O -0.405 6.405 13 C 0.027 3.973 14 C -0.161 4.161 15 C -0.152 4.152 16 C 0.115 3.885 17 C -0.142 4.142 18 C 0.179 3.821 19 H 0.046 0.954 20 N -0.731 5.731 21 C -0.230 4.230 22 H 0.077 0.923 23 C -0.076 4.076 24 N -0.971 5.971 25 Si 0.967 3.033 26 H -0.278 1.278 27 H -0.301 1.301 28 H -0.280 1.280 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.063 0.937 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.105 0.895 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.038 0.962 41 H 0.053 0.947 42 H 0.098 0.902 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.111 0.889 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.045 0.955 51 H 0.370 0.630 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.651 17.298 -16.154 24.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.068 0.932 5 C 0.004 3.996 6 N -0.344 5.344 7 C 0.304 3.696 8 O -0.454 6.454 9 C -0.134 4.134 10 C -0.122 4.122 11 C 0.029 3.971 12 O -0.325 6.325 13 C -0.069 4.069 14 C -0.198 4.198 15 C -0.188 4.188 16 C -0.008 4.008 17 C -0.183 4.183 18 C 0.070 3.930 19 H 0.064 0.936 20 N -0.370 5.370 21 C -0.362 4.362 22 H 0.095 0.905 23 C -0.268 4.268 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.204 1.204 27 H -0.227 1.227 28 H -0.206 1.206 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.100 0.900 44 H 0.116 0.884 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.101 0.899 48 H 0.124 0.876 49 H 0.085 0.915 50 H 0.064 0.936 51 H 0.202 0.798 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -7.904 17.134 -16.251 24.903 hybrid contribution 0.394 -0.920 0.904 1.349 sum -7.510 16.215 -15.347 23.555 Atomic orbital electron populations 1.21767 0.94921 1.01867 1.01626 1.21357 0.96031 0.95292 1.01852 1.21535 0.95864 0.96354 0.97391 0.93167 1.21464 0.99174 0.82313 0.96621 1.48258 1.08967 1.06524 1.70625 1.21112 0.86618 0.86855 0.74997 1.90621 1.16224 1.87109 1.51417 1.21154 0.98071 0.88760 1.05413 1.21015 1.00757 0.99133 0.91330 1.21892 0.88774 0.99867 0.86537 1.87787 1.34343 1.93512 1.16835 1.22883 1.01635 1.00217 0.82169 1.22866 0.96322 1.02353 0.98279 1.23324 1.01122 0.93289 1.01105 1.21884 0.78940 1.02671 0.97328 1.22472 1.01297 0.97629 0.96904 1.20409 0.92316 0.91380 0.88846 0.93630 1.42576 1.15487 1.64995 1.13906 1.19555 0.92603 1.25733 0.98332 0.90506 1.25479 1.01564 1.03241 0.96564 1.69817 1.37129 1.50092 1.05182 0.85296 0.80428 0.78440 0.76116 1.20378 1.22742 1.20590 0.91863 0.92096 0.93633 0.91829 0.93475 0.89764 0.90713 0.86672 0.87709 0.94102 0.91760 0.94343 0.92826 0.88360 0.90006 0.88380 0.87058 0.87598 0.89933 0.87557 0.91452 0.93612 0.79827 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.03 9.67 71.99 0.70 -3.34 16 2 C -0.11 -3.55 5.31 30.60 0.16 -3.39 16 3 C -0.09 -3.03 1.91 -10.86 -0.02 -3.05 16 4 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 5 C 0.13 3.66 5.30 86.22 0.46 4.11 16 6 N -0.61 -16.46 2.98 -819.75 -2.44 -18.91 16 7 C 0.51 14.17 7.55 87.66 0.66 14.83 16 8 O -0.57 -19.16 14.56 -3.05 -0.04 -19.20 16 9 C -0.09 -1.99 3.96 29.85 0.12 -1.87 16 10 C -0.12 -2.46 1.44 -52.16 -0.08 -2.53 16 11 C 0.11 2.10 5.89 71.98 0.42 2.53 16 12 O -0.41 -8.22 9.47 -148.98 -1.41 -9.63 16 13 C 0.03 0.38 11.01 113.37 1.25 1.63 16 14 C -0.16 -3.23 9.19 30.59 0.28 -2.95 16 15 C -0.15 -2.36 9.83 30.62 0.30 -2.06 16 16 C 0.11 2.73 6.34 86.36 0.55 3.28 16 17 C -0.14 -4.57 5.66 30.67 0.17 -4.39 16 18 C 0.18 6.69 2.20 45.02 0.10 6.79 16 19 H 0.05 1.73 8.08 -2.39 -0.02 1.71 16 20 N -0.73 -35.48 4.33 -322.81 -1.40 -36.87 16 21 C -0.23 -12.32 9.93 84.03 0.83 -11.48 16 22 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.08 -4.31 5.50 84.86 0.47 -3.85 16 24 N -0.97 -59.04 13.06 21.65 0.28 -58.76 16 25 Si 0.97 45.54 29.55 68.60 2.03 47.57 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 28 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 29 H 0.06 1.59 6.70 -2.39 -0.02 1.58 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.91 7.21 -2.39 -0.02 1.89 16 34 H 0.08 2.55 5.72 -2.39 -0.01 2.54 16 35 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.12 2.28 7.08 -2.39 -0.02 2.26 16 37 H 0.10 1.91 7.19 -2.39 -0.02 1.89 16 38 H 0.04 0.97 7.85 -2.39 -0.02 0.95 16 39 H 0.06 1.02 7.94 -2.39 -0.02 1.01 16 40 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 45 H 0.11 1.38 8.08 -2.39 -0.02 1.36 16 46 H 0.11 1.47 8.08 -2.39 -0.02 1.45 16 47 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 48 H 0.11 1.97 5.88 -2.38 -0.01 1.95 16 49 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 50 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 51 H 0.37 19.86 7.51 -92.71 -0.70 19.16 16 52 H 0.25 14.79 8.31 -92.70 -0.77 14.02 16 Total: -1.00 -67.01 405.29 3.58 -63.44 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: 0.19 Total: 38.12 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: 6.38 Total: -5.74 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -3.56 Total: -114.54 kcal Atomic # 8 Polarization: -27.38 SS G_CDS: -1.46 Total: -28.83 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -67.01 3.58 -63.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754464826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.869 kcal (2) G-P(sol) polarization free energy of solvation -67.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds