Wall clock time and date at job start Tue Mar 31 2020 14:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47411 * 2 1 4 4 H 1.09001 * 109.46991 * 55.00000 * 3 2 1 5 5 C 1.53006 * 109.47093 * 295.00365 * 3 2 1 6 6 C 1.52999 * 109.47093 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47197 * 59.99702 * 6 5 3 8 8 C 1.52995 * 109.47449 * 299.99816 * 7 6 5 9 9 C 1.53001 * 109.47425 * 175.00262 * 3 2 1 10 10 H 1.08995 * 109.46801 * 300.00498 * 9 3 2 11 11 O 1.42905 * 109.46905 * 59.99947 * 9 3 2 12 12 C 1.42894 * 114.00019 * 209.99796 * 11 9 3 13 13 C 1.50701 * 109.47476 * 180.02562 * 12 11 9 14 14 O 1.21282 * 119.99766 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99984 * 180.28050 * 13 12 11 16 16 C 1.46504 * 119.99650 * 179.72639 * 15 13 12 17 17 C 1.52998 * 109.47007 * 175.86795 * 16 15 13 18 18 N 1.46504 * 115.54867 * 279.53702 * 17 16 15 19 19 C 1.36941 * 119.99792 * 295.38660 * 18 17 16 20 20 H 1.07993 * 120.00120 * 357.16257 * 19 18 17 21 21 C 1.38813 * 119.99594 * 177.16338 * 19 18 17 22 22 N 1.31617 * 120.00342 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99731 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47131 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47349 * 119.99966 * 23 21 19 26 26 H 1.48502 * 109.46765 * 239.99659 * 23 21 19 27 27 C 1.52999 * 117.49852 * 133.86828 * 17 16 15 28 28 C 1.52999 * 117.49983 * 65.20572 * 17 16 15 29 29 H 1.08995 * 109.47375 * 59.99495 * 1 2 3 30 30 H 1.08997 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46637 * 299.99989 * 1 2 3 32 32 H 1.09006 * 109.46950 * 240.00424 * 2 1 3 33 33 H 1.08995 * 109.47375 * 120.00505 * 2 1 3 34 34 H 1.08993 * 109.46909 * 59.99867 * 5 3 2 35 35 H 1.09001 * 109.46904 * 299.99688 * 5 3 2 36 36 H 1.09001 * 109.46991 * 299.99635 * 6 5 3 37 37 H 1.09003 * 109.46916 * 180.02562 * 6 5 3 38 38 H 1.09005 * 109.46663 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.46892 * 60.00416 * 7 6 5 40 40 H 1.08996 * 109.47564 * 300.00189 * 8 7 6 41 41 H 1.09000 * 109.47234 * 179.97438 * 8 7 6 42 42 H 1.09006 * 109.46828 * 60.00047 * 12 11 9 43 43 H 1.09006 * 109.47304 * 300.00632 * 12 11 9 44 44 H 0.96998 * 120.00149 * 359.72238 * 15 13 12 45 45 H 1.09002 * 109.47043 * 295.86474 * 16 15 13 46 46 H 1.09003 * 109.47118 * 55.86661 * 16 15 13 47 47 H 0.97000 * 120.00029 * 115.38849 * 18 17 16 48 48 H 0.97005 * 120.00194 * 180.02562 * 22 21 19 49 49 H 1.08990 * 117.50381 * 359.97438 * 27 17 16 50 50 H 1.09002 * 117.49621 * 145.02311 * 27 17 16 51 51 H 1.09004 * 117.50046 * 214.97809 * 28 17 16 52 52 H 1.08990 * 117.50090 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 2.1448 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1811 8 6 4.0743 2.8876 0.1262 9 6 3.5649 1.4443 0.1257 10 1 3.8532 0.9569 1.0569 11 8 4.1346 0.7376 -0.9780 12 6 5.3746 0.0937 -0.6783 13 6 5.8820 -0.6162 -1.9069 14 8 5.2442 -0.5753 -2.9377 15 7 7.0413 -1.3018 -1.8586 16 6 7.5315 -1.9969 -3.0514 17 6 8.9050 -2.6043 -2.7593 18 7 10.0362 -1.6768 -2.8401 19 6 10.3641 -1.0995 -4.0378 20 1 9.8181 -1.3628 -4.9316 21 6 11.3983 -0.1759 -4.1030 22 7 12.0634 0.1453 -3.0136 23 14 11.8451 0.6121 -5.7366 24 1 10.9529 0.0858 -6.8005 25 1 11.6822 2.0848 -5.6369 26 1 13.2561 0.2917 -6.0711 27 6 9.1450 -4.0509 -3.1959 28 6 8.9771 -3.7169 -1.7115 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1253 -1.3968 35 1 2.0698 1.5875 -2.1492 36 1 1.7098 4.1080 -0.4653 37 1 1.8559 4.0567 -2.2383 38 1 4.0324 4.5995 -1.1804 39 1 4.1044 3.0329 -2.0229 40 1 3.6394 3.4263 0.9680 41 1 5.1606 2.8889 0.2157 42 1 5.2240 -0.6293 0.1234 43 1 6.1042 0.8395 -0.3626 44 1 7.5512 -1.3349 -1.0341 45 1 6.8339 -2.7894 -3.3224 46 1 7.6152 -1.2888 -3.8759 47 1 10.5528 -1.4716 -2.0452 48 1 12.7859 0.7910 -3.0591 49 1 8.3244 -4.5700 -3.6908 50 1 10.1447 -4.3126 -3.5428 51 1 9.8664 -3.7590 -1.0825 52 1 8.0461 -4.0164 -1.2306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754513750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:43 Heat of formation + Delta-G solvation = -72.790195 kcal Electronic energy + Delta-G solvation = -28408.564242 eV Core-core repulsion = 24601.127755 eV Total energy + Delta-G solvation = -3807.436486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.00538 -39.12186 -37.51277 -36.09101 -34.06520 -33.71502 -33.02290 -30.38950 -29.72378 -29.28422 -28.23677 -25.49682 -24.03462 -23.90461 -22.51722 -21.94539 -20.86546 -20.14645 -19.75495 -19.17177 -17.23625 -16.99021 -16.52917 -16.13269 -15.69023 -15.38722 -15.07999 -14.77705 -14.40542 -14.38665 -14.10220 -13.88266 -13.47299 -13.31199 -13.25540 -13.09349 -12.83526 -12.70698 -12.31415 -11.98173 -11.93989 -11.84861 -11.65063 -11.44381 -11.17623 -11.00531 -10.99219 -10.91223 -10.82794 -10.59747 -10.46855 -10.27775 -10.21892 -10.04308 -9.76574 -9.58791 -9.47868 -9.30894 -8.88316 -8.59728 -7.08687 -5.85279 -3.15390 2.92519 3.02659 3.40639 3.47694 3.49461 4.01363 4.40093 4.46357 4.55130 4.59199 4.67018 4.90221 4.98552 4.99619 5.06923 5.12617 5.18099 5.21340 5.24340 5.27094 5.29550 5.31521 5.38353 5.44843 5.50447 5.57941 5.60063 5.61262 5.71713 5.79391 5.80851 5.84607 5.99666 6.05844 6.07192 6.08863 6.14654 6.23083 6.24556 6.27331 6.40494 6.45424 6.53998 6.66719 6.74401 6.83905 7.10407 7.68883 7.88130 8.32719 8.57204 9.44463 9.97386 10.32422 11.36753 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002831 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.668420 B = 9888.161689 C =11113.637184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.079 4.079 4 H 0.077 0.923 5 C -0.113 4.113 6 C -0.117 4.117 7 C -0.117 4.117 8 C -0.141 4.141 9 C 0.092 3.908 10 H 0.059 0.941 11 O -0.345 6.345 12 C 0.043 3.957 13 C 0.511 3.489 14 O -0.529 6.529 15 N -0.711 5.711 16 C 0.150 3.850 17 C 0.129 3.871 18 N -0.689 5.689 19 C -0.237 4.237 20 H 0.073 0.927 21 C -0.010 4.010 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.291 1.291 27 C -0.188 4.188 28 C -0.187 4.187 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.399 0.601 45 H 0.057 0.943 46 H 0.079 0.921 47 H 0.388 0.612 48 H 0.255 0.745 49 H 0.083 0.917 50 H 0.095 0.905 51 H 0.092 0.908 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.800 0.797 11.279 22.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.097 4.097 4 H 0.095 0.905 5 C -0.151 4.151 6 C -0.154 4.154 7 C -0.154 4.154 8 C -0.179 4.179 9 C 0.033 3.967 10 H 0.077 0.923 11 O -0.263 6.263 12 C -0.037 4.037 13 C 0.295 3.705 14 O -0.404 6.404 15 N -0.363 5.363 16 C 0.024 3.976 17 C 0.035 3.965 18 N -0.328 5.328 19 C -0.367 4.367 20 H 0.091 0.909 21 C -0.206 4.206 22 N -0.580 5.580 23 Si 0.738 3.262 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.218 1.218 27 C -0.229 4.229 28 C -0.225 4.225 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.233 0.767 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.223 0.777 48 H 0.065 0.935 49 H 0.101 0.899 50 H 0.114 0.886 51 H 0.110 0.890 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.314 0.926 10.153 22.728 hybrid contribution 1.092 0.579 0.149 1.244 sum -19.222 1.504 10.301 21.860 Atomic orbital electron populations 1.21813 0.96080 1.01425 1.01631 1.21529 0.95523 0.96104 1.02570 1.21257 0.92872 0.96674 0.98894 0.90461 1.21571 1.00021 0.95510 0.97975 1.21512 0.95891 0.96791 1.01249 1.21431 0.95841 0.99936 0.98230 1.22037 1.01132 0.96046 0.98695 1.22191 0.93525 0.91733 0.89203 0.92288 1.88057 1.34944 1.68315 1.35010 1.22248 0.88429 0.96994 0.96026 1.20132 0.81375 0.79362 0.89593 1.90704 1.56985 1.60700 1.32061 1.45782 1.22671 1.52490 1.15338 1.21243 0.92849 0.95937 0.87523 1.20158 0.89027 0.85747 1.01564 1.41801 1.31015 1.50280 1.09739 1.19218 1.12958 1.17438 0.87124 0.90871 1.24751 0.98936 0.99687 0.97255 1.69663 1.24769 1.36999 1.26545 0.86111 0.77900 0.79060 0.83125 1.20346 1.21786 1.21827 1.23380 1.02550 1.00873 0.96070 1.23082 1.02295 1.04422 0.92667 0.92444 0.92960 0.93132 0.90785 0.92514 0.92193 0.90575 0.92621 0.92176 0.92451 0.90746 0.91308 0.91722 0.90801 0.90506 0.76719 0.92494 0.90251 0.77744 0.93475 0.89879 0.88621 0.88997 0.89444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.67 37.16 0.36 -0.83 16 2 C -0.12 -1.10 5.19 -26.73 -0.14 -1.23 16 3 C -0.08 -0.71 2.02 -90.62 -0.18 -0.90 16 4 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 5 C -0.11 -1.12 4.81 -26.73 -0.13 -1.25 16 6 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 7 C -0.12 -1.25 5.78 -26.74 -0.15 -1.40 16 8 C -0.14 -1.36 5.63 -26.70 -0.15 -1.51 16 9 C 0.09 0.92 2.35 -26.70 -0.06 0.85 16 10 H 0.06 0.50 7.79 -51.93 -0.40 0.10 16 11 O -0.35 -4.58 7.60 -55.14 -0.42 -5.00 16 12 C 0.04 0.54 6.23 36.01 0.22 0.76 16 13 C 0.51 8.45 7.91 -10.99 -0.09 8.37 16 14 O -0.53 -11.01 16.50 -14.35 -0.24 -11.24 16 15 N -0.71 -11.29 5.52 -60.29 -0.33 -11.63 16 16 C 0.15 2.74 5.72 -4.04 -0.02 2.71 16 17 C 0.13 2.42 2.17 -131.82 -0.29 2.14 16 18 N -0.69 -16.32 5.50 -47.23 -0.26 -16.58 16 19 C -0.24 -6.37 9.53 -15.06 -0.14 -6.51 16 20 H 0.07 1.97 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -27.33 13.06 55.49 0.72 -26.60 16 23 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 C -0.19 -3.18 10.11 -26.69 -0.27 -3.45 16 28 C -0.19 -2.85 10.07 -26.69 -0.27 -3.12 16 29 H 0.06 0.45 6.56 -51.93 -0.34 0.11 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.84 7.84 -51.93 -0.41 0.44 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.53 6.56 -51.93 -0.34 0.18 16 35 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.99 7.68 -51.93 -0.40 0.59 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.64 7.87 -51.93 -0.41 0.23 16 42 H 0.07 0.70 8.09 -51.93 -0.42 0.28 16 43 H 0.08 0.86 7.88 -51.93 -0.41 0.45 16 44 H 0.40 5.50 8.41 -40.82 -0.34 5.16 16 45 H 0.06 0.98 7.94 -51.93 -0.41 0.56 16 46 H 0.08 1.73 7.76 -51.93 -0.40 1.32 16 47 H 0.39 9.73 8.03 -40.82 -0.33 9.40 16 48 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 49 H 0.08 1.25 8.08 -51.93 -0.42 0.83 16 50 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 51 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 52 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 411.52 15.07 6.20 6.20 Total: -1.00 -31.60 411.52 -10.54 -42.15 By element: Atomic # 1 Polarization: 22.03 SS G_CDS: -9.63 Total: 12.40 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -1.57 Total: -7.01 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: 0.13 Total: -54.81 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.66 Total: -16.24 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.60 -10.54 -42.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754513750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.644 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds