Wall clock time and date at job start Tue Mar 31 2020 14:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47411 * 2 1 4 4 H 1.09001 * 109.46991 * 55.00000 * 3 2 1 5 5 C 1.53006 * 109.47093 * 295.00365 * 3 2 1 6 6 C 1.52999 * 109.47093 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47197 * 59.99702 * 6 5 3 8 8 C 1.52995 * 109.47449 * 299.99816 * 7 6 5 9 9 C 1.53001 * 109.47425 * 175.00262 * 3 2 1 10 10 H 1.08995 * 109.46801 * 300.00498 * 9 3 2 11 11 O 1.42905 * 109.46905 * 59.99947 * 9 3 2 12 12 C 1.42894 * 114.00019 * 209.99796 * 11 9 3 13 13 C 1.50701 * 109.47476 * 180.02562 * 12 11 9 14 14 O 1.21282 * 119.99766 * 359.97438 * 13 12 11 15 15 N 1.34773 * 119.99984 * 180.28050 * 13 12 11 16 16 C 1.46504 * 119.99650 * 179.72639 * 15 13 12 17 17 C 1.52998 * 109.47007 * 175.86795 * 16 15 13 18 18 N 1.46504 * 115.54867 * 279.53702 * 17 16 15 19 19 C 1.36941 * 119.99792 * 295.38660 * 18 17 16 20 20 H 1.07993 * 120.00120 * 357.16257 * 19 18 17 21 21 C 1.38813 * 119.99594 * 177.16338 * 19 18 17 22 22 N 1.31617 * 120.00342 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99731 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47131 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47349 * 119.99966 * 23 21 19 26 26 H 1.48502 * 109.46765 * 239.99659 * 23 21 19 27 27 C 1.52999 * 117.49852 * 133.86828 * 17 16 15 28 28 C 1.52999 * 117.49983 * 65.20572 * 17 16 15 29 29 H 1.08995 * 109.47375 * 59.99495 * 1 2 3 30 30 H 1.08997 * 109.47318 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46637 * 299.99989 * 1 2 3 32 32 H 1.09006 * 109.46950 * 240.00424 * 2 1 3 33 33 H 1.08995 * 109.47375 * 120.00505 * 2 1 3 34 34 H 1.08993 * 109.46909 * 59.99867 * 5 3 2 35 35 H 1.09001 * 109.46904 * 299.99688 * 5 3 2 36 36 H 1.09001 * 109.46991 * 299.99635 * 6 5 3 37 37 H 1.09003 * 109.46916 * 180.02562 * 6 5 3 38 38 H 1.09005 * 109.46663 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.46892 * 60.00416 * 7 6 5 40 40 H 1.08996 * 109.47564 * 300.00189 * 8 7 6 41 41 H 1.09000 * 109.47234 * 179.97438 * 8 7 6 42 42 H 1.09006 * 109.46828 * 60.00047 * 12 11 9 43 43 H 1.09006 * 109.47304 * 300.00632 * 12 11 9 44 44 H 0.96998 * 120.00149 * 359.72238 * 15 13 12 45 45 H 1.09002 * 109.47043 * 295.86474 * 16 15 13 46 46 H 1.09003 * 109.47118 * 55.86661 * 16 15 13 47 47 H 0.97000 * 120.00029 * 115.38849 * 18 17 16 48 48 H 0.97005 * 120.00194 * 180.02562 * 22 21 19 49 49 H 1.08990 * 117.50381 * 359.97438 * 27 17 16 50 50 H 1.09002 * 117.49621 * 145.02311 * 27 17 16 51 51 H 1.09004 * 117.50046 * 214.97809 * 28 17 16 52 52 H 1.08990 * 117.50090 * 0.02562 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6352 2.1266 -1.3074 6 6 2.1448 3.5692 -1.3071 7 6 3.6695 3.5716 -1.1811 8 6 4.0743 2.8876 0.1262 9 6 3.5649 1.4443 0.1257 10 1 3.8532 0.9569 1.0569 11 8 4.1346 0.7376 -0.9780 12 6 5.3746 0.0937 -0.6783 13 6 5.8820 -0.6162 -1.9069 14 8 5.2442 -0.5753 -2.9377 15 7 7.0413 -1.3018 -1.8586 16 6 7.5315 -1.9969 -3.0514 17 6 8.9050 -2.6043 -2.7593 18 7 10.0362 -1.6768 -2.8401 19 6 10.3641 -1.0995 -4.0378 20 1 9.8181 -1.3628 -4.9316 21 6 11.3983 -0.1759 -4.1030 22 7 12.0634 0.1453 -3.0136 23 14 11.8451 0.6121 -5.7366 24 1 10.9529 0.0858 -6.8005 25 1 11.6822 2.0848 -5.6369 26 1 13.2561 0.2917 -6.0711 27 6 9.1450 -4.0509 -3.1959 28 6 8.9771 -3.7169 -1.7115 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.5490 2.1253 -1.3968 35 1 2.0698 1.5875 -2.1492 36 1 1.7098 4.1080 -0.4653 37 1 1.8559 4.0567 -2.2383 38 1 4.0324 4.5995 -1.1804 39 1 4.1044 3.0329 -2.0229 40 1 3.6394 3.4263 0.9680 41 1 5.1606 2.8889 0.2157 42 1 5.2240 -0.6293 0.1234 43 1 6.1042 0.8395 -0.3626 44 1 7.5512 -1.3349 -1.0341 45 1 6.8339 -2.7894 -3.3224 46 1 7.6152 -1.2888 -3.8759 47 1 10.5528 -1.4716 -2.0452 48 1 12.7859 0.7910 -3.0591 49 1 8.3244 -4.5700 -3.6908 50 1 10.1447 -4.3126 -3.5428 51 1 9.8664 -3.7590 -1.0825 52 1 8.0461 -4.0164 -1.2306 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754513750.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:42 Heat of formation + Delta-G solvation = -91.782712 kcal Electronic energy + Delta-G solvation = -28409.387819 eV Core-core repulsion = 24601.127755 eV Total energy + Delta-G solvation = -3808.260064 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.02626 -40.27726 -38.96567 -37.03214 -35.31638 -34.80597 -34.78566 -31.65971 -31.21070 -30.14615 -29.27457 -26.78900 -25.92947 -24.75888 -23.30910 -23.25590 -21.69042 -21.38561 -20.71911 -20.52652 -19.16792 -18.32857 -17.56512 -17.27553 -16.88530 -16.44273 -16.33287 -16.07930 -15.68209 -15.52756 -15.23259 -15.12050 -14.93059 -14.52333 -14.33424 -14.16529 -13.77312 -13.60422 -13.51064 -13.43023 -12.97183 -12.93951 -12.87935 -12.72237 -12.38085 -12.27417 -12.19986 -12.17926 -11.92548 -11.90770 -11.72363 -11.55692 -11.41998 -11.27218 -10.99574 -10.96918 -10.77793 -10.54752 -10.31898 -10.02626 -9.04147 -7.98658 -5.26396 1.42829 1.44900 1.53556 1.62964 1.89575 2.50573 2.94661 3.19378 3.36949 3.65183 3.68937 3.79147 3.84164 3.87928 3.92180 4.17769 4.19753 4.21817 4.24217 4.29515 4.32921 4.36960 4.49336 4.53458 4.59464 4.63871 4.77064 4.80205 4.83075 4.87957 4.91759 4.93136 4.96284 5.04781 5.07251 5.18201 5.19644 5.26845 5.30982 5.33975 5.36829 5.38531 5.47207 5.48730 5.53086 5.54293 5.64905 6.24365 6.25010 6.64000 7.28874 7.31433 8.04874 8.28141 9.23929 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013936 B = 0.002831 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2008.668420 B = 9888.161689 C =11113.637184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.076 4.076 4 H 0.102 0.898 5 C -0.111 4.111 6 C -0.114 4.114 7 C -0.119 4.119 8 C -0.140 4.140 9 C 0.085 3.915 10 H 0.083 0.917 11 O -0.373 6.373 12 C 0.050 3.950 13 C 0.505 3.495 14 O -0.580 6.580 15 N -0.702 5.702 16 C 0.161 3.839 17 C 0.099 3.901 18 N -0.698 5.698 19 C -0.228 4.228 20 H 0.067 0.933 21 C -0.069 4.069 22 N -0.963 5.963 23 Si 0.961 3.039 24 H -0.272 1.272 25 H -0.296 1.296 26 H -0.290 1.290 27 C -0.186 4.186 28 C -0.150 4.150 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.042 0.958 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.038 0.962 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.059 0.941 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.412 0.588 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.378 0.622 48 H 0.251 0.749 49 H 0.106 0.894 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.371 0.268 13.683 25.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.094 4.094 4 H 0.120 0.880 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.177 4.177 9 C 0.028 3.972 10 H 0.100 0.900 11 O -0.292 6.292 12 C -0.030 4.030 13 C 0.292 3.708 14 O -0.459 6.459 15 N -0.354 5.354 16 C 0.035 3.965 17 C 0.007 3.993 18 N -0.337 5.337 19 C -0.360 4.360 20 H 0.085 0.915 21 C -0.261 4.261 22 N -0.614 5.614 23 Si 0.791 3.209 24 H -0.197 1.197 25 H -0.223 1.223 26 H -0.217 1.217 27 C -0.226 4.226 28 C -0.187 4.187 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.248 0.752 45 H 0.089 0.911 46 H 0.053 0.947 47 H 0.212 0.788 48 H 0.060 0.940 49 H 0.124 0.876 50 H 0.097 0.903 51 H 0.112 0.888 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.904 0.357 12.576 25.260 hybrid contribution 1.506 0.678 -0.614 1.762 sum -20.398 1.035 11.962 23.670 Atomic orbital electron populations 1.21795 0.95044 1.01743 1.02141 1.21480 0.96430 0.95969 1.01554 1.21301 0.92446 0.96728 0.98935 0.87974 1.21520 1.00455 0.95485 0.97379 1.21502 0.94972 0.96655 1.02011 1.21417 0.96677 0.99821 0.97713 1.22056 1.00996 0.96059 0.98624 1.22445 0.93900 0.91726 0.89148 0.89956 1.88058 1.35177 1.68897 1.37090 1.22261 0.88648 0.97789 0.94290 1.20972 0.80795 0.78691 0.90364 1.90679 1.58456 1.62483 1.34325 1.45712 1.22607 1.52040 1.15085 1.20949 0.93094 0.95258 0.87195 1.20336 0.87465 0.85738 1.05800 1.41829 1.32410 1.51201 1.08249 1.19425 1.11865 1.16477 0.88183 0.91470 1.25400 0.99762 1.01065 0.99915 1.69775 1.25557 1.38050 1.28017 0.85245 0.77540 0.77780 0.80293 1.19672 1.22319 1.21737 1.23395 1.02563 0.98751 0.97933 1.23174 1.03962 0.99920 0.91662 0.92945 0.92825 0.91539 0.93869 0.91389 0.91038 0.94315 0.90347 0.92626 0.91908 0.94537 0.88799 0.92261 0.87052 0.89182 0.75216 0.91060 0.94683 0.78819 0.94015 0.87580 0.90265 0.88783 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.67 71.98 0.70 -1.36 16 2 C -0.12 -1.96 5.19 30.59 0.16 -1.80 16 3 C -0.08 -1.22 2.02 -10.79 -0.02 -1.24 16 4 H 0.10 1.19 8.14 -2.39 -0.02 1.18 16 5 C -0.11 -2.15 4.81 30.60 0.15 -2.00 16 6 C -0.11 -2.04 5.92 30.59 0.18 -1.86 16 7 C -0.12 -2.50 5.78 30.59 0.18 -2.33 16 8 C -0.14 -2.42 5.63 30.61 0.17 -2.25 16 9 C 0.09 1.53 2.35 30.61 0.07 1.60 16 10 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 11 O -0.37 -9.77 7.60 -129.94 -0.99 -10.76 16 12 C 0.05 1.16 6.23 71.24 0.44 1.60 16 13 C 0.50 16.70 7.91 87.66 0.69 17.39 16 14 O -0.58 -25.06 16.50 16.00 0.26 -24.80 16 15 N -0.70 -21.80 5.52 -463.05 -2.55 -24.36 16 16 C 0.16 5.87 5.72 86.38 0.49 6.36 16 17 C 0.10 3.62 2.17 3.60 0.01 3.63 16 18 N -0.70 -33.33 5.50 -303.34 -1.67 -35.00 16 19 C -0.23 -12.46 9.53 84.03 0.80 -11.66 16 20 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 22 N -0.96 -57.56 13.06 21.65 0.28 -57.28 16 23 Si 0.96 46.83 29.55 68.60 2.03 48.86 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 C -0.19 -5.95 10.11 30.62 0.31 -5.64 16 28 C -0.15 -4.13 10.07 30.62 0.31 -3.82 16 29 H 0.05 0.76 6.56 -2.39 -0.02 0.75 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.04 0.99 7.84 -2.38 -0.02 0.97 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.07 1.19 6.56 -2.39 -0.02 1.17 16 35 H 0.04 1.03 7.68 -2.39 -0.02 1.02 16 36 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.04 1.03 7.68 -2.39 -0.02 1.01 16 40 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.09 7.87 -2.39 -0.02 1.07 16 42 H 0.11 1.76 8.09 -2.38 -0.02 1.74 16 43 H 0.09 1.87 7.88 -2.38 -0.02 1.85 16 44 H 0.41 10.64 8.41 -92.71 -0.78 9.86 16 45 H 0.07 2.38 7.94 -2.39 -0.02 2.37 16 46 H 0.03 1.58 7.76 -2.39 -0.02 1.56 16 47 H 0.38 19.18 8.03 -92.71 -0.74 18.43 16 48 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 49 H 0.11 2.90 8.08 -2.39 -0.02 2.88 16 50 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 51 H 0.09 2.63 8.14 -2.38 -0.02 2.61 16 52 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -71.99 411.52 1.84 -70.15 By element: Atomic # 1 Polarization: 40.63 SS G_CDS: -0.63 Total: 40.00 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: 5.11 Total: -6.83 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -3.94 Total: -116.64 kcal Atomic # 8 Polarization: -34.83 SS G_CDS: -0.72 Total: -35.55 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -71.99 1.84 -70.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754513750.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.630 kcal (2) G-P(sol) polarization free energy of solvation -71.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds