Wall clock time and date at job start Tue Mar 31 2020 14:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 H 1.08991 * 110.01714 * 304.11511 * 3 2 1 5 5 C 1.54274 * 110.02892 * 65.56022 * 3 2 1 6 6 C 1.54884 * 104.19253 * 142.88884 * 5 3 2 7 7 C 1.54889 * 102.75269 * 322.05788 * 6 5 3 8 8 C 1.53878 * 110.02984 * 182.72170 * 3 2 1 9 9 H 1.08996 * 110.03012 * 121.43522 * 8 3 2 10 10 C 1.50699 * 110.03150 * 0.02562 * 8 3 2 11 11 O 1.21283 * 120.00210 * 271.98464 * 10 8 3 12 12 N 1.34784 * 120.00045 * 91.98906 * 10 8 3 13 13 C 1.46493 * 120.00120 * 184.78495 * 12 10 8 14 14 C 1.53004 * 109.46300 * 64.68847 * 13 12 10 15 15 O 1.42896 * 109.46884 * 300.40736 * 14 13 12 16 16 C 1.53041 * 109.46228 * 304.71751 * 13 12 10 17 17 C 1.53171 * 109.32430 * 301.35997 * 16 13 12 18 18 N 1.46921 * 108.76666 * 305.35352 * 17 16 13 19 19 C 1.36939 * 120.63311 * 233.63202 * 18 17 16 20 20 H 1.08000 * 120.00556 * 149.85920 * 19 18 17 21 21 C 1.38811 * 119.99652 * 329.86497 * 19 18 17 22 22 N 1.31625 * 120.00278 * 342.76740 * 21 19 18 23 23 Si 1.86798 * 120.00152 * 162.77374 * 21 19 18 24 24 H 1.48501 * 109.46978 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47329 * 119.99544 * 23 21 19 26 26 H 1.48498 * 109.47334 * 239.99556 * 23 21 19 27 27 C 1.46922 * 118.74024 * 53.61083 * 18 17 16 28 28 C 1.53040 * 109.46020 * 184.66234 * 13 12 10 29 29 H 1.08994 * 109.47508 * 59.99704 * 1 2 3 30 30 H 1.09004 * 109.46839 * 299.98987 * 1 2 3 31 31 H 1.09006 * 109.46730 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47239 * 120.00759 * 2 1 3 33 33 H 1.09007 * 109.46542 * 240.00601 * 2 1 3 34 34 H 1.09000 * 110.48000 * 261.57256 * 5 3 2 35 35 H 1.08999 * 110.48627 * 24.21090 * 5 3 2 36 36 H 1.09004 * 110.75350 * 203.74052 * 6 5 3 37 37 H 1.09006 * 110.91505 * 80.44646 * 6 5 3 38 38 H 1.09000 * 110.48264 * 279.26191 * 7 6 5 39 39 H 1.09003 * 110.59647 * 156.67772 * 7 6 5 40 40 H 0.97001 * 119.99591 * 4.78023 * 12 10 8 41 41 H 1.09002 * 109.46669 * 60.40258 * 14 13 12 42 42 H 1.08993 * 109.47546 * 180.40117 * 14 13 12 43 43 H 0.96704 * 114.00155 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.49717 * 61.29158 * 16 13 12 45 45 H 1.08994 * 109.49901 * 181.39628 * 16 13 12 46 46 H 1.08999 * 109.58616 * 185.56790 * 17 16 13 47 47 H 1.08998 * 109.70939 * 65.21014 * 17 16 13 48 48 H 0.96998 * 120.00428 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.59037 * 186.60152 * 27 18 17 50 50 H 1.09002 * 109.70543 * 66.25035 * 27 18 17 51 51 H 1.09004 * 109.49832 * 178.61002 * 28 13 12 52 52 H 1.09001 * 109.49710 * 298.70101 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9857 -0.8478 5 6 1.6507 2.1406 1.3196 6 6 2.8675 3.0417 1.6458 7 6 4.0683 2.1651 1.2115 8 6 3.5772 1.4582 -0.0686 9 1 3.9060 2.0097 -0.9494 10 6 4.1062 0.0478 -0.1153 11 8 4.3320 -0.5496 0.9157 12 7 4.3284 -0.5496 -1.3029 13 6 4.7422 -1.9541 -1.3503 14 6 3.6188 -2.8353 -0.8002 15 8 3.3356 -2.4591 0.5489 16 6 6.0011 -2.1437 -0.5009 17 6 7.1131 -1.2346 -1.0329 18 7 7.3038 -1.5087 -2.4637 19 6 8.5434 -1.8199 -2.9553 20 1 8.6366 -2.4649 -3.8165 21 6 9.6804 -1.3064 -2.3466 22 7 9.5833 -0.2753 -1.5342 23 14 11.3482 -2.0785 -2.6804 24 1 11.1877 -3.2157 -3.6218 25 1 12.2526 -1.0639 -3.2787 26 1 11.9303 -2.5701 -1.4058 27 6 6.1392 -1.4432 -3.3569 28 6 5.0379 -2.3500 -2.7987 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 0.7544 2.7451 1.1812 35 1 1.4979 1.4052 2.1095 36 1 2.9130 3.2576 2.7133 37 1 2.8341 3.9650 1.0675 38 1 4.3059 1.4337 1.9840 39 1 4.9377 2.7859 0.9948 40 1 4.2143 -0.0496 -2.1262 41 1 2.7240 -2.7055 -1.4091 42 1 3.9292 -3.8797 -0.8287 43 1 2.6319 -2.9777 0.9624 44 1 5.7835 -1.8837 0.5351 45 1 6.3237 -3.1834 -0.5557 46 1 8.0393 -1.4373 -0.4953 47 1 6.8317 -0.1906 -0.8952 48 1 10.3778 0.0838 -1.1091 49 1 6.4228 -1.7835 -4.3529 50 1 5.7751 -0.4172 -3.4114 51 1 5.3695 -3.3878 -2.8318 52 1 4.1347 -2.2370 -3.3984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755179701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:23 Heat of formation + Delta-G solvation = -77.212741 kcal Electronic energy + Delta-G solvation = -31034.070188 eV Core-core repulsion = 27226.441926 eV Total energy + Delta-G solvation = -3807.628262 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.44626 -38.53629 -36.42710 -35.89662 -33.90193 -33.06429 -31.84285 -30.45127 -29.82550 -28.70963 -27.51171 -26.62202 -23.80725 -22.93069 -22.22445 -22.00814 -20.60994 -20.41705 -18.91864 -18.52458 -17.03085 -16.62200 -16.35002 -15.85715 -15.09508 -14.88985 -14.73154 -14.48286 -14.35477 -13.86798 -13.52446 -13.45507 -13.23508 -13.16764 -13.01158 -12.67196 -12.23055 -12.13727 -11.89348 -11.65324 -11.51589 -11.34137 -11.21743 -11.08728 -10.95306 -10.89569 -10.72431 -10.69128 -10.56046 -10.41056 -10.33974 -10.30784 -10.17593 -9.98435 -9.66263 -9.52496 -9.38744 -8.64188 -8.41204 -8.24069 -6.58551 -5.74318 -3.18775 3.37559 3.39177 3.47102 3.48953 3.72440 4.52137 4.58109 4.60607 4.67934 4.75487 5.17508 5.23051 5.27913 5.33812 5.38010 5.42373 5.50568 5.55787 5.58334 5.60236 5.61111 5.66539 5.71068 5.76709 5.78756 5.87040 5.91970 5.93804 6.03560 6.05421 6.11155 6.19419 6.24296 6.30061 6.35738 6.45858 6.51519 6.55230 6.58272 6.69082 6.79622 6.94921 7.08278 7.34452 7.49989 7.78067 7.84942 8.02249 8.21127 8.50910 9.02418 9.26462 9.89571 10.47736 11.33479 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.004066 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.410823 B = 6884.397327 C = 7693.201842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C -0.074 4.074 4 H 0.070 0.930 5 C -0.115 4.115 6 C -0.124 4.124 7 C -0.112 4.112 8 C -0.112 4.112 9 H 0.081 0.919 10 C 0.527 3.473 11 O -0.495 6.495 12 N -0.718 5.718 13 C 0.193 3.807 14 C 0.069 3.931 15 O -0.523 6.523 16 C -0.150 4.150 17 C 0.182 3.818 18 N -0.590 5.590 19 C -0.257 4.257 20 H 0.063 0.937 21 C 0.006 3.994 22 N -0.897 5.897 23 Si 0.899 3.101 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.150 3.850 28 C -0.137 4.137 29 H 0.047 0.953 30 H 0.051 0.949 31 H 0.048 0.952 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.391 0.609 41 H 0.031 0.969 42 H 0.042 0.958 43 H 0.350 0.650 44 H 0.090 0.910 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.017 0.983 48 H 0.252 0.748 49 H 0.054 0.946 50 H 0.015 0.985 51 H 0.073 0.927 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.029 1.906 2.570 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.093 4.093 4 H 0.089 0.911 5 C -0.152 4.152 6 C -0.161 4.161 7 C -0.150 4.150 8 C -0.134 4.134 9 H 0.100 0.900 10 C 0.312 3.688 11 O -0.369 6.369 12 N -0.370 5.370 13 C 0.107 3.893 14 C -0.010 4.010 15 O -0.325 6.325 16 C -0.189 4.189 17 C 0.057 3.943 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.081 0.919 21 C -0.193 4.193 22 N -0.541 5.541 23 Si 0.729 3.271 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.216 1.216 27 C 0.023 3.977 28 C -0.177 4.177 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.224 0.776 41 H 0.050 0.950 42 H 0.060 0.940 43 H 0.194 0.806 44 H 0.108 0.892 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.035 0.965 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.032 0.968 51 H 0.091 0.909 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.231 1.975 3.284 18.630 hybrid contribution 0.427 -0.531 -0.748 1.012 sum -17.805 1.443 2.536 18.042 Atomic orbital electron populations 1.21775 0.96562 1.01012 1.01227 1.21869 0.94984 0.95755 1.03860 1.21663 0.92731 0.96727 0.98150 0.91130 1.22416 0.97469 0.98295 0.97058 1.22474 0.94967 0.97895 1.00771 1.22333 0.97368 0.98608 0.96656 1.22014 0.96163 0.94742 1.00456 0.90047 1.20002 0.77342 0.87525 0.83919 1.90634 1.49270 1.64205 1.32760 1.46012 1.70565 1.12262 1.08161 1.20194 0.93268 0.80241 0.95585 1.22639 0.96696 0.97270 0.84414 1.87155 1.58479 1.61286 1.25562 1.22576 0.94646 1.00664 1.01037 1.20606 0.95668 0.94142 0.83898 1.44072 1.03348 1.81507 1.02403 1.19173 0.82664 1.22829 1.13972 0.91923 1.25079 0.97953 0.95946 1.00332 1.70062 1.28163 1.22378 1.33517 0.86287 0.84468 0.78789 0.77583 1.20270 1.21766 1.21572 1.20798 0.88014 0.94988 0.93945 1.22285 0.99598 1.02088 0.93736 0.93364 0.92950 0.93288 0.89772 0.91713 0.92110 0.91318 0.91678 0.91835 0.89507 0.91614 0.77560 0.95035 0.94024 0.80628 0.89172 0.93203 0.90590 0.96481 0.93751 0.92702 0.96752 0.90856 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.74 37.16 0.36 -1.02 16 2 C -0.13 -1.44 3.79 -26.73 -0.10 -1.54 16 3 C -0.07 -0.82 2.96 -89.49 -0.26 -1.08 16 4 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 5 C -0.11 -1.18 5.42 -25.07 -0.14 -1.31 16 6 C -0.12 -1.31 6.91 -24.74 -0.17 -1.48 16 7 C -0.11 -1.50 6.31 -25.08 -0.16 -1.66 16 8 C -0.11 -1.50 3.29 -90.66 -0.30 -1.80 16 9 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 10 C 0.53 8.50 3.67 -10.98 -0.04 8.46 16 11 O -0.50 -9.41 9.67 -19.28 -0.19 -9.60 16 12 N -0.72 -11.25 3.46 -47.57 -0.16 -11.41 16 13 C 0.19 3.23 0.66 -131.78 -0.09 3.14 16 14 C 0.07 0.98 6.07 37.16 0.23 1.21 16 15 O -0.52 -7.72 7.91 -60.07 -0.48 -8.19 16 16 C -0.15 -3.12 4.47 -26.62 -0.12 -3.24 16 17 C 0.18 4.53 5.03 -3.72 -0.02 4.51 16 18 N -0.59 -14.71 2.98 -172.34 -0.51 -15.22 16 19 C -0.26 -7.08 9.56 -15.06 -0.14 -7.22 16 20 H 0.06 1.70 7.89 -52.49 -0.41 1.28 16 21 C 0.01 0.17 4.89 -17.43 -0.09 0.09 16 22 N -0.90 -26.62 11.37 55.49 0.63 -25.99 16 23 Si 0.90 21.97 29.59 -169.99 -5.03 16.95 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.15 2.99 6.24 -3.71 -0.02 2.96 16 28 C -0.14 -2.23 4.94 -26.61 -0.13 -2.36 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.46 7.43 -51.93 -0.39 0.08 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 1.14 6.06 -51.93 -0.31 0.82 16 33 H 0.06 0.80 6.87 -51.92 -0.36 0.44 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.75 7.80 -51.93 -0.40 0.35 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 1.36 6.86 -51.93 -0.36 1.00 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.39 5.62 7.43 -40.82 -0.30 5.32 16 41 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.35 3.80 9.12 45.56 0.42 4.21 16 44 H 0.09 2.02 5.47 -51.93 -0.28 1.74 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 2.17 6.23 -51.93 -0.32 1.85 16 47 H 0.02 0.45 7.57 -51.93 -0.39 0.06 16 48 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 49 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 50 H 0.01 0.29 7.04 -51.93 -0.37 -0.08 16 51 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 52 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 LS Contribution 378.09 15.07 5.70 5.70 Total: -1.00 -31.59 378.09 -9.76 -41.35 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.53 Total: 8.78 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -1.19 Total: -2.35 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.05 Total: -52.63 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.66 Total: -17.79 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.59 -9.76 -41.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755179701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.867 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds