Wall clock time and date at job start Tue Mar 31 2020 14:06:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.46869 * 2 1 4 4 H 1.08991 * 110.01714 * 304.11511 * 3 2 1 5 5 C 1.54274 * 110.02892 * 65.56022 * 3 2 1 6 6 C 1.54884 * 104.19253 * 142.88884 * 5 3 2 7 7 C 1.54889 * 102.75269 * 322.05788 * 6 5 3 8 8 C 1.53878 * 110.02984 * 182.72170 * 3 2 1 9 9 H 1.08996 * 110.03012 * 121.43522 * 8 3 2 10 10 C 1.50699 * 110.03150 * 0.02562 * 8 3 2 11 11 O 1.21283 * 120.00210 * 271.98464 * 10 8 3 12 12 N 1.34784 * 120.00045 * 91.98906 * 10 8 3 13 13 C 1.46493 * 120.00120 * 184.78495 * 12 10 8 14 14 C 1.53004 * 109.46300 * 64.68847 * 13 12 10 15 15 O 1.42896 * 109.46884 * 300.40736 * 14 13 12 16 16 C 1.53041 * 109.46228 * 304.71751 * 13 12 10 17 17 C 1.53171 * 109.32430 * 301.35997 * 16 13 12 18 18 N 1.46921 * 108.76666 * 305.35352 * 17 16 13 19 19 C 1.36939 * 120.63311 * 233.63202 * 18 17 16 20 20 H 1.08000 * 120.00556 * 149.85920 * 19 18 17 21 21 C 1.38811 * 119.99652 * 329.86497 * 19 18 17 22 22 N 1.31625 * 120.00278 * 342.76740 * 21 19 18 23 23 Si 1.86798 * 120.00152 * 162.77374 * 21 19 18 24 24 H 1.48501 * 109.46978 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47329 * 119.99544 * 23 21 19 26 26 H 1.48498 * 109.47334 * 239.99556 * 23 21 19 27 27 C 1.46922 * 118.74024 * 53.61083 * 18 17 16 28 28 C 1.53040 * 109.46020 * 184.66234 * 13 12 10 29 29 H 1.08994 * 109.47508 * 59.99704 * 1 2 3 30 30 H 1.09004 * 109.46839 * 299.98987 * 1 2 3 31 31 H 1.09006 * 109.46730 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47239 * 120.00759 * 2 1 3 33 33 H 1.09007 * 109.46542 * 240.00601 * 2 1 3 34 34 H 1.09000 * 110.48000 * 261.57256 * 5 3 2 35 35 H 1.08999 * 110.48627 * 24.21090 * 5 3 2 36 36 H 1.09004 * 110.75350 * 203.74052 * 6 5 3 37 37 H 1.09006 * 110.91505 * 80.44646 * 6 5 3 38 38 H 1.09000 * 110.48264 * 279.26191 * 7 6 5 39 39 H 1.09003 * 110.59647 * 156.67772 * 7 6 5 40 40 H 0.97001 * 119.99591 * 4.78023 * 12 10 8 41 41 H 1.09002 * 109.46669 * 60.40258 * 14 13 12 42 42 H 1.08993 * 109.47546 * 180.40117 * 14 13 12 43 43 H 0.96704 * 114.00155 * 180.02562 * 15 14 13 44 44 H 1.09003 * 109.49717 * 61.29158 * 16 13 12 45 45 H 1.08994 * 109.49901 * 181.39628 * 16 13 12 46 46 H 1.08999 * 109.58616 * 185.56790 * 17 16 13 47 47 H 1.08998 * 109.70939 * 65.21014 * 17 16 13 48 48 H 0.96998 * 120.00428 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.59037 * 186.60152 * 27 18 17 50 50 H 1.09002 * 109.70543 * 66.25035 * 27 18 17 51 51 H 1.09004 * 109.49832 * 178.61002 * 28 13 12 52 52 H 1.09001 * 109.49710 * 298.70101 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9857 -0.8478 5 6 1.6507 2.1406 1.3196 6 6 2.8675 3.0417 1.6458 7 6 4.0683 2.1651 1.2115 8 6 3.5772 1.4582 -0.0686 9 1 3.9060 2.0097 -0.9494 10 6 4.1062 0.0478 -0.1153 11 8 4.3320 -0.5496 0.9157 12 7 4.3284 -0.5496 -1.3029 13 6 4.7422 -1.9541 -1.3503 14 6 3.6188 -2.8353 -0.8002 15 8 3.3356 -2.4591 0.5489 16 6 6.0011 -2.1437 -0.5009 17 6 7.1131 -1.2346 -1.0329 18 7 7.3038 -1.5087 -2.4637 19 6 8.5434 -1.8199 -2.9553 20 1 8.6366 -2.4649 -3.8165 21 6 9.6804 -1.3064 -2.3466 22 7 9.5833 -0.2753 -1.5342 23 14 11.3482 -2.0785 -2.6804 24 1 11.1877 -3.2157 -3.6218 25 1 12.2526 -1.0639 -3.2787 26 1 11.9303 -2.5701 -1.4058 27 6 6.1392 -1.4432 -3.3569 28 6 5.0379 -2.3500 -2.7987 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 0.7544 2.7451 1.1812 35 1 1.4979 1.4052 2.1095 36 1 2.9130 3.2576 2.7133 37 1 2.8341 3.9650 1.0675 38 1 4.3059 1.4337 1.9840 39 1 4.9377 2.7859 0.9948 40 1 4.2143 -0.0496 -2.1262 41 1 2.7240 -2.7055 -1.4091 42 1 3.9292 -3.8797 -0.8287 43 1 2.6319 -2.9777 0.9624 44 1 5.7835 -1.8837 0.5351 45 1 6.3237 -3.1834 -0.5557 46 1 8.0393 -1.4373 -0.4953 47 1 6.8317 -0.1906 -0.8952 48 1 10.3778 0.0838 -1.1091 49 1 6.4228 -1.7835 -4.3529 50 1 5.7751 -0.4172 -3.4114 51 1 5.3695 -3.3878 -2.8318 52 1 4.1347 -2.2370 -3.3984 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755179701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:21 Heat of formation + Delta-G solvation = -96.810450 kcal Electronic energy + Delta-G solvation = -31034.920008 eV Core-core repulsion = 27226.441926 eV Total energy + Delta-G solvation = -3808.478083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.69846 -39.78110 -37.77836 -37.18357 -35.51545 -33.96520 -33.52571 -32.04796 -31.56206 -29.80459 -28.38583 -28.25856 -25.58393 -23.95554 -23.82998 -23.18341 -22.19170 -21.35773 -20.21439 -19.89809 -18.74592 -17.97860 -17.48133 -16.94260 -16.82372 -16.30294 -16.10533 -15.63952 -15.57785 -15.21520 -15.19817 -14.97445 -14.42885 -14.32138 -14.25344 -13.97103 -13.69793 -13.32411 -13.16403 -13.12744 -12.98339 -12.81393 -12.64227 -12.50086 -12.30260 -12.16972 -12.06339 -11.94043 -11.85281 -11.79345 -11.66502 -11.46312 -11.38226 -11.31040 -11.19385 -11.18258 -10.61936 -10.53913 -10.00443 -9.59273 -8.63827 -7.87525 -5.34823 1.42830 1.45340 1.55479 2.13602 2.47501 2.51289 3.27315 3.45081 3.62490 3.72192 3.74249 3.83362 4.00596 4.08239 4.26937 4.33440 4.42170 4.43402 4.49449 4.53145 4.60729 4.62871 4.66097 4.70980 4.75706 4.77424 4.83054 4.83473 4.90747 4.98253 5.01000 5.10191 5.11898 5.15719 5.23228 5.26788 5.29055 5.36335 5.37320 5.38687 5.50082 5.53279 5.53934 5.64383 5.70269 5.72682 5.95173 6.38959 6.94089 7.11756 7.14711 7.77604 7.87080 8.39853 9.18146 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017974 B = 0.004066 C = 0.003639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.410823 B = 6884.397327 C = 7693.201842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.120 4.120 3 C -0.069 4.069 4 H 0.091 0.909 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.117 4.117 8 C -0.113 4.113 9 H 0.088 0.912 10 C 0.524 3.476 11 O -0.528 6.528 12 N -0.714 5.714 13 C 0.194 3.806 14 C 0.077 3.923 15 O -0.542 6.542 16 C -0.135 4.135 17 C 0.201 3.799 18 N -0.607 5.607 19 C -0.263 4.263 20 H 0.069 0.931 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.262 1.262 25 H -0.291 1.291 26 H -0.295 1.295 27 C 0.143 3.857 28 C -0.124 4.124 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.057 0.943 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.399 0.601 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.367 0.633 44 H 0.071 0.929 45 H 0.040 0.960 46 H 0.028 0.972 47 H -0.011 1.011 48 H 0.247 0.753 49 H 0.059 0.941 50 H 0.021 0.979 51 H 0.072 0.928 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 1.649 0.934 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.157 4.157 3 C -0.088 4.088 4 H 0.109 0.891 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.155 4.155 8 C -0.134 4.134 9 H 0.107 0.893 10 C 0.310 3.690 11 O -0.404 6.404 12 N -0.367 5.367 13 C 0.108 3.892 14 C -0.002 4.002 15 O -0.347 6.347 16 C -0.174 4.174 17 C 0.075 3.925 18 N -0.331 5.331 19 C -0.393 4.393 20 H 0.087 0.913 21 C -0.246 4.246 22 N -0.580 5.580 23 Si 0.791 3.209 24 H -0.186 1.186 25 H -0.218 1.218 26 H -0.223 1.223 27 C 0.018 3.982 28 C -0.163 4.163 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.234 0.766 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.214 0.786 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.047 0.953 47 H 0.007 0.993 48 H 0.056 0.944 49 H 0.078 0.922 50 H 0.039 0.961 51 H 0.091 0.909 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -21.101 1.701 1.611 21.231 hybrid contribution 1.322 -0.440 -0.224 1.411 sum -19.779 1.261 1.387 19.868 Atomic orbital electron populations 1.21723 0.94722 1.01560 1.01986 1.21741 0.96455 0.95359 1.02188 1.21704 0.90566 0.97117 0.99403 0.89082 1.22397 0.98056 0.98104 0.96205 1.22457 0.93530 0.97964 1.01387 1.22318 0.98585 0.98406 0.96168 1.22091 0.98141 0.92754 1.00450 0.89341 1.20487 0.76612 0.88394 0.83458 1.90623 1.50616 1.65246 1.33880 1.45982 1.70178 1.12032 1.08510 1.20133 0.92235 0.81583 0.95268 1.22490 0.96510 0.96548 0.84645 1.87131 1.59496 1.62063 1.25982 1.22318 0.95621 0.98744 1.00760 1.20202 0.94735 0.93374 0.84210 1.44279 1.04200 1.81667 1.02909 1.19555 0.83971 1.22158 1.13635 0.91345 1.25853 1.01468 0.96549 1.00737 1.70224 1.28613 1.24094 1.35115 0.85272 0.80172 0.78204 0.77209 1.18632 1.21771 1.22251 1.21021 0.87364 0.96321 0.93501 1.22138 0.99824 1.00809 0.93511 0.92232 0.92488 0.92935 0.92314 0.92472 0.89683 0.92386 0.91134 0.90212 0.92475 0.92605 0.76624 0.92254 0.93432 0.78643 0.91072 0.94077 0.95340 0.99257 0.94432 0.92205 0.96145 0.90926 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.74 71.98 0.70 -1.52 16 2 C -0.12 -2.46 3.79 30.60 0.12 -2.35 16 3 C -0.07 -1.37 2.96 -10.06 -0.03 -1.40 16 4 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 5 C -0.11 -2.01 5.42 31.67 0.17 -1.84 16 6 C -0.12 -2.30 6.91 31.88 0.22 -2.08 16 7 C -0.12 -3.21 6.31 31.67 0.20 -3.01 16 8 C -0.11 -2.95 3.29 -10.82 -0.04 -2.98 16 9 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 10 C 0.52 16.98 3.67 87.66 0.32 17.30 16 11 O -0.53 -20.73 9.67 20.71 0.20 -20.53 16 12 N -0.71 -21.71 3.46 -422.80 -1.46 -23.18 16 13 C 0.19 6.24 0.66 3.63 0.00 6.25 16 14 C 0.08 2.01 6.07 71.98 0.44 2.45 16 15 O -0.54 -15.50 7.91 -125.23 -0.99 -16.49 16 16 C -0.13 -5.78 4.47 30.67 0.14 -5.64 16 17 C 0.20 10.44 5.03 86.36 0.43 10.87 16 18 N -0.61 -30.66 2.98 -699.16 -2.08 -32.74 16 19 C -0.26 -14.66 9.56 84.03 0.80 -13.86 16 20 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 21 C -0.05 -2.91 4.89 84.86 0.41 -2.50 16 22 N -0.93 -57.86 11.37 21.65 0.25 -57.61 16 23 Si 0.96 46.16 29.59 68.60 2.03 48.18 16 24 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 27 C 0.14 5.53 6.24 86.36 0.54 6.07 16 28 C -0.12 -3.67 4.94 30.67 0.15 -3.52 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.84 7.43 -2.39 -0.02 0.82 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 1.53 6.06 -2.39 -0.01 1.52 16 33 H 0.06 1.25 6.87 -2.38 -0.02 1.24 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.19 7.80 -2.39 -0.02 1.17 16 36 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 37 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.06 1.91 6.86 -2.39 -0.02 1.89 16 39 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.40 10.75 7.43 -92.71 -0.69 10.06 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.37 7.48 9.12 -74.05 -0.68 6.80 16 44 H 0.07 3.35 5.47 -2.39 -0.01 3.34 16 45 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 46 H 0.03 1.72 6.23 -2.39 -0.01 1.71 16 47 H -0.01 -0.60 7.57 -2.39 -0.02 -0.62 16 48 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 49 H 0.06 2.24 7.93 -2.38 -0.02 2.22 16 50 H 0.02 0.78 7.04 -2.39 -0.02 0.76 16 51 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -72.33 378.09 2.07 -70.26 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.45 Total: 29.87 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 4.58 Total: 2.24 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -3.30 Total: -113.53 kcal Atomic # 8 Polarization: -36.23 SS G_CDS: -0.79 Total: -37.02 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.33 2.07 -70.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755179701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.547 kcal (2) G-P(sol) polarization free energy of solvation -72.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds