Wall clock time and date at job start Tue Mar 31 2020 15:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.46863 * 2 1 4 4 C 1.42906 * 113.99494 * 184.75134 * 3 2 1 5 5 H 1.08991 * 109.47747 * 344.43978 * 4 3 2 6 6 C 1.53005 * 109.46863 * 104.44312 * 4 3 2 7 7 C 1.52992 * 109.46796 * 295.79431 * 6 4 3 8 8 C 1.50707 * 109.46990 * 224.43713 * 4 3 2 9 9 O 1.21284 * 119.99599 * 355.05592 * 8 4 3 10 10 N 1.34767 * 119.99993 * 174.77591 * 8 4 3 11 11 C 1.47210 * 126.70319 * 176.29062 * 10 8 4 12 12 C 1.53759 * 106.40618 * 211.33509 * 11 10 8 13 13 C 1.53004 * 112.06399 * 103.40912 * 12 11 10 14 14 C 1.54310 * 109.08017 * 228.10761 * 12 11 10 15 15 N 1.50808 * 103.42194 * 88.72937 * 14 12 11 16 16 C 1.36936 * 127.62872 * 219.61869 * 15 14 12 17 17 H 1.07997 * 119.99377 * 165.35289 * 16 15 14 18 18 C 1.38804 * 120.00044 * 345.36172 * 16 15 14 19 19 N 1.31625 * 120.00284 * 350.76713 * 18 16 15 20 20 Si 1.86801 * 120.00053 * 170.77766 * 18 16 15 21 21 H 1.48503 * 109.47448 * 59.98992 * 20 18 16 22 22 H 1.48494 * 109.47525 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46855 * 299.99335 * 20 18 16 24 24 C 1.48114 * 104.52249 * 39.79067 * 15 14 12 25 25 C 1.54315 * 104.71380 * 320.07175 * 24 15 14 26 26 C 1.53006 * 112.07323 * 145.86631 * 25 24 15 27 27 C 1.47208 * 126.70433 * 355.98282 * 10 8 4 28 28 H 1.09002 * 109.47191 * 299.99580 * 1 2 3 29 29 H 1.08998 * 109.47619 * 59.99732 * 1 2 3 30 30 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47191 * 240.00420 * 2 1 3 32 32 H 1.08996 * 109.47366 * 120.00736 * 2 1 3 33 33 H 1.09000 * 109.47041 * 55.79813 * 6 4 3 34 34 H 1.09002 * 109.46771 * 175.79899 * 6 4 3 35 35 H 1.09004 * 109.47012 * 183.65253 * 7 6 4 36 36 H 1.09004 * 109.47321 * 303.65160 * 7 6 4 37 37 H 1.09006 * 109.47363 * 63.65627 * 7 6 4 38 38 H 1.08991 * 110.06846 * 330.57420 * 11 10 8 39 39 H 1.08999 * 110.06402 * 92.04791 * 11 10 8 40 40 H 1.08997 * 109.47463 * 61.01471 * 13 12 11 41 41 H 1.08999 * 109.47347 * 181.01599 * 13 12 11 42 42 H 1.09000 * 109.46885 * 301.01412 * 13 12 11 43 43 H 1.08996 * 110.39355 * 207.14742 * 14 12 11 44 44 H 1.09000 * 110.38942 * 329.53545 * 14 12 11 45 45 H 0.97001 * 119.99724 * 180.02562 * 19 18 16 46 46 H 1.08999 * 110.38481 * 201.26362 * 24 15 14 47 47 H 1.08997 * 110.39088 * 78.88012 * 24 15 14 48 48 H 1.08998 * 109.46806 * 302.40415 * 26 25 24 49 49 H 1.09000 * 109.47305 * 62.41228 * 26 25 24 50 50 H 1.09000 * 109.46673 * 182.40779 * 26 25 24 51 51 H 1.08995 * 110.06411 * 267.90651 * 27 10 8 52 52 H 1.08998 * 110.06643 * 29.43204 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4266 1.4616 -0.1081 5 1 3.8861 0.4967 0.1057 6 6 3.7964 1.8994 -1.5268 7 6 3.3839 0.8114 -2.5201 8 6 3.9248 2.4852 0.8794 9 8 3.1344 3.1245 1.5409 10 7 5.2487 2.6861 1.0315 11 6 5.8928 3.6931 1.8908 12 6 7.2062 4.0833 1.1930 13 6 7.1050 5.4415 0.4957 14 6 8.3552 4.0441 2.2222 15 7 8.8396 2.6176 2.1518 16 6 9.2343 1.8165 3.1898 17 1 9.3336 0.7513 3.0422 18 6 9.5065 2.3735 4.4317 19 7 9.5633 3.6814 4.5683 20 14 9.7925 1.2669 5.9093 21 1 10.9580 0.3843 5.6486 22 1 10.0622 2.1012 7.1078 23 1 8.5851 0.4355 6.1460 24 6 8.7962 2.2814 0.7100 25 6 7.4956 2.9326 0.1946 26 6 7.6356 3.4366 -1.2433 27 6 6.3333 1.9374 0.3758 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2773 2.8271 -1.7676 34 1 4.8729 2.0587 -1.5888 35 1 3.7053 1.0939 -3.5226 36 1 3.8525 -0.1323 -2.2407 37 1 2.2999 0.6973 -2.5047 38 1 5.2485 4.5665 1.9909 39 1 6.1018 3.2683 2.8726 40 1 6.8872 6.2135 1.2336 41 1 8.0499 5.6675 0.0015 42 1 6.3058 5.4110 -0.2449 43 1 9.1477 4.7343 1.9332 44 1 7.9824 4.2876 3.2171 45 1 9.7540 4.0706 5.4361 46 1 8.7599 1.2006 0.5731 47 1 9.6608 2.7014 0.1959 48 1 8.4584 4.1492 -1.3000 49 1 7.8376 2.5947 -1.9054 50 1 6.7102 3.9251 -1.5487 51 1 6.6456 1.1038 1.0046 52 1 6.0005 1.5701 -0.5950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755459817.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:39 Heat of formation + Delta-G solvation = -52.745460 kcal Electronic energy + Delta-G solvation = -30310.440151 eV Core-core repulsion = 26503.872870 eV Total energy + Delta-G solvation = -3806.567281 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 3.58 seconds Orbital eigenvalues (eV) -40.57480 -39.10138 -37.46458 -34.83039 -33.78252 -32.83725 -31.71419 -31.17586 -30.61971 -28.04685 -26.62628 -25.77032 -25.26740 -24.83153 -22.93550 -22.45909 -21.71328 -20.14313 -19.42464 -17.87195 -17.20393 -16.90516 -16.37600 -15.85222 -15.64269 -15.10729 -14.67756 -14.43724 -14.24981 -14.07509 -13.67392 -13.49722 -13.39349 -13.26663 -12.96633 -12.62609 -12.53489 -12.43941 -12.28083 -12.02270 -11.84194 -11.73955 -11.54014 -11.47065 -11.39531 -11.36905 -11.26192 -10.88982 -10.84624 -10.78555 -10.52929 -10.12920 -10.07882 -10.01062 -9.79988 -9.73458 -9.55640 -9.19391 -8.68642 -8.27826 -6.88995 -5.80621 -3.14417 2.81728 2.94609 3.37271 3.42864 3.43509 3.81991 4.43888 4.52354 4.67620 4.74948 4.78676 4.89841 4.98554 5.01451 5.06658 5.16905 5.18487 5.32147 5.41796 5.43600 5.47079 5.52624 5.56645 5.60009 5.69146 5.74150 5.76693 5.80167 5.82284 5.85183 5.97286 6.00566 6.10247 6.13647 6.19619 6.24286 6.29141 6.34473 6.43138 6.50487 6.54893 6.73502 6.79449 6.90095 7.04156 7.24839 7.51109 7.67975 7.87711 8.13509 8.43504 9.05174 9.71390 10.47516 11.33317 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.003968 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.221925 B = 7055.395721 C = 7912.394335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.355 6.355 4 C 0.080 3.920 5 H 0.084 0.916 6 C -0.141 4.141 7 C -0.151 4.151 8 C 0.522 3.478 9 O -0.531 6.531 10 N -0.608 5.608 11 C 0.127 3.873 12 C -0.092 4.092 13 C -0.125 4.125 14 C 0.172 3.828 15 N -0.597 5.597 16 C -0.226 4.226 17 H 0.074 0.926 18 C -0.003 4.003 19 N -0.915 5.915 20 Si 0.908 3.092 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.141 3.859 25 C -0.085 4.085 26 C -0.126 4.126 27 C 0.110 3.890 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.054 0.946 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.048 0.952 43 H 0.027 0.973 44 H 0.090 0.910 45 H 0.255 0.745 46 H 0.047 0.953 47 H 0.025 0.975 48 H 0.061 0.939 49 H 0.051 0.949 50 H 0.052 0.948 51 H 0.075 0.925 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.433 -4.745 -14.973 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.026 4.026 3 O -0.273 6.273 4 C 0.019 3.981 5 H 0.102 0.898 6 C -0.179 4.179 7 C -0.208 4.208 8 C 0.310 3.690 9 O -0.407 6.407 10 N -0.342 5.342 11 C 0.005 3.995 12 C -0.094 4.094 13 C -0.182 4.182 14 C 0.047 3.953 15 N -0.321 5.321 16 C -0.354 4.354 17 H 0.092 0.908 18 C -0.201 4.201 19 N -0.561 5.561 20 Si 0.739 3.261 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.014 3.986 25 C -0.087 4.087 26 C -0.183 4.183 27 C -0.012 4.012 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.109 0.891 45 H 0.065 0.935 46 H 0.066 0.934 47 H 0.043 0.957 48 H 0.080 0.920 49 H 0.070 0.930 50 H 0.071 0.929 51 H 0.093 0.907 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.018 -4.277 -14.323 18.570 hybrid contribution 0.477 -0.835 0.860 1.290 sum -10.541 -5.112 -13.463 17.847 Atomic orbital electron populations 1.21717 0.93576 1.02072 1.03315 1.22679 0.95871 0.83863 1.00157 1.88024 1.18810 1.26092 1.94397 1.21895 0.83473 0.98294 0.94458 0.89819 1.22064 1.02590 1.00460 0.92792 1.21800 1.01870 0.98206 0.98953 1.20148 0.80849 0.84426 0.83617 1.90694 1.54190 1.49035 1.46743 1.48511 1.04132 1.36098 1.45473 1.22136 0.92318 0.90978 0.94082 1.22498 0.96661 0.93778 0.96501 1.21685 1.01076 0.95756 0.99720 1.22067 0.90541 0.85873 0.96829 1.45499 1.75767 1.11084 0.99717 1.18901 1.39048 0.89267 0.88180 0.90799 1.24825 1.01080 0.95830 0.98321 1.69864 1.54130 1.08732 1.23363 0.86263 0.78027 0.79472 0.82366 1.21090 1.21562 1.21189 1.21650 0.92772 0.96989 0.87158 1.22368 0.96446 0.95123 0.94794 1.21684 1.01573 1.00648 0.94421 1.22440 0.86653 0.95144 0.96995 0.91634 0.91892 0.91158 0.92998 0.93346 0.90502 0.89546 0.92090 0.92708 0.92155 0.91392 0.90441 0.92756 0.92346 0.93302 0.95470 0.89137 0.93531 0.93437 0.95742 0.91957 0.92982 0.92861 0.90657 0.91066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 10.28 37.15 0.38 -0.95 16 2 C 0.05 0.53 6.00 37.15 0.22 0.76 16 3 O -0.36 -5.06 9.21 -55.09 -0.51 -5.57 16 4 C 0.08 1.08 2.04 -27.88 -0.06 1.02 16 5 H 0.08 0.98 7.65 -51.93 -0.40 0.59 16 6 C -0.14 -1.53 5.40 -26.73 -0.14 -1.67 16 7 C -0.15 -1.26 8.84 37.15 0.33 -0.93 16 8 C 0.52 9.13 7.24 -10.99 -0.08 9.05 16 9 O -0.53 -11.45 16.77 -14.31 -0.24 -11.69 16 10 N -0.61 -10.26 3.31 -171.42 -0.57 -10.83 16 11 C 0.13 2.38 6.10 -3.26 -0.02 2.36 16 12 C -0.09 -1.61 1.06 -152.33 -0.16 -1.77 16 13 C -0.12 -1.86 7.47 37.16 0.28 -1.59 16 14 C 0.17 3.84 4.90 -0.93 0.00 3.83 16 15 N -0.60 -14.08 3.43 -166.73 -0.57 -14.66 16 16 C -0.23 -5.97 10.36 -15.06 -0.16 -6.12 16 17 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 18 C 0.00 -0.09 5.42 -17.43 -0.09 -0.18 16 19 N -0.91 -25.94 10.82 55.49 0.60 -25.34 16 20 Si 0.91 21.61 29.56 -169.99 -5.03 16.58 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.14 2.65 6.09 -2.47 -0.02 2.63 16 25 C -0.08 -1.32 1.09 -152.16 -0.17 -1.48 16 26 C -0.13 -1.54 7.55 37.16 0.28 -1.26 16 27 C 0.11 1.64 5.75 -3.09 -0.02 1.62 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.44 6.43 -51.93 -0.33 0.11 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.09 0.89 5.27 -51.93 -0.27 0.61 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.51 6.87 -51.93 -0.36 0.16 16 38 H 0.07 1.28 7.65 -51.93 -0.40 0.89 16 39 H 0.08 1.70 7.48 -51.93 -0.39 1.31 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.06 0.83 7.16 -51.93 -0.37 0.45 16 42 H 0.05 0.67 7.10 -51.93 -0.37 0.31 16 43 H 0.03 0.64 7.97 -51.93 -0.41 0.23 16 44 H 0.09 2.30 6.08 -51.93 -0.32 1.99 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.05 0.85 7.66 -51.93 -0.40 0.45 16 47 H 0.02 0.47 7.96 -51.93 -0.41 0.05 16 48 H 0.06 0.77 7.17 -51.93 -0.37 0.40 16 49 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 50 H 0.05 0.62 7.09 -51.93 -0.37 0.25 16 51 H 0.08 1.24 7.47 -51.93 -0.39 0.85 16 52 H 0.07 0.84 4.68 -51.93 -0.24 0.60 16 LS Contribution 391.14 15.07 5.89 5.89 Total: -1.00 -31.60 391.14 -8.99 -40.59 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -9.15 Total: -0.28 kcal Atomic # 6 Polarization: 4.73 SS G_CDS: 0.58 Total: 5.30 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: -0.54 Total: -50.83 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.75 Total: -17.26 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.60 -8.99 -40.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755459817.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.157 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.58 seconds