Wall clock time and date at job start Tue Mar 31 2020 15:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.46863 * 2 1 4 4 C 1.42906 * 113.99494 * 184.75134 * 3 2 1 5 5 H 1.08991 * 109.47747 * 344.43978 * 4 3 2 6 6 C 1.53005 * 109.46863 * 104.44312 * 4 3 2 7 7 C 1.52992 * 109.46796 * 295.79431 * 6 4 3 8 8 C 1.50707 * 109.46990 * 224.43713 * 4 3 2 9 9 O 1.21284 * 119.99599 * 355.05592 * 8 4 3 10 10 N 1.34767 * 119.99993 * 174.77591 * 8 4 3 11 11 C 1.47210 * 126.70319 * 176.29062 * 10 8 4 12 12 C 1.53759 * 106.40618 * 211.33509 * 11 10 8 13 13 C 1.53004 * 112.06399 * 103.40912 * 12 11 10 14 14 C 1.54310 * 109.08017 * 228.10761 * 12 11 10 15 15 N 1.50808 * 103.42194 * 88.72937 * 14 12 11 16 16 C 1.36936 * 127.62872 * 219.61869 * 15 14 12 17 17 H 1.07997 * 119.99377 * 165.35289 * 16 15 14 18 18 C 1.38804 * 120.00044 * 345.36172 * 16 15 14 19 19 N 1.31625 * 120.00284 * 350.76713 * 18 16 15 20 20 Si 1.86801 * 120.00053 * 170.77766 * 18 16 15 21 21 H 1.48503 * 109.47448 * 59.98992 * 20 18 16 22 22 H 1.48494 * 109.47525 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46855 * 299.99335 * 20 18 16 24 24 C 1.48114 * 104.52249 * 39.79067 * 15 14 12 25 25 C 1.54315 * 104.71380 * 320.07175 * 24 15 14 26 26 C 1.53006 * 112.07323 * 145.86631 * 25 24 15 27 27 C 1.47208 * 126.70433 * 355.98282 * 10 8 4 28 28 H 1.09002 * 109.47191 * 299.99580 * 1 2 3 29 29 H 1.08998 * 109.47619 * 59.99732 * 1 2 3 30 30 H 1.08999 * 109.47352 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47191 * 240.00420 * 2 1 3 32 32 H 1.08996 * 109.47366 * 120.00736 * 2 1 3 33 33 H 1.09000 * 109.47041 * 55.79813 * 6 4 3 34 34 H 1.09002 * 109.46771 * 175.79899 * 6 4 3 35 35 H 1.09004 * 109.47012 * 183.65253 * 7 6 4 36 36 H 1.09004 * 109.47321 * 303.65160 * 7 6 4 37 37 H 1.09006 * 109.47363 * 63.65627 * 7 6 4 38 38 H 1.08991 * 110.06846 * 330.57420 * 11 10 8 39 39 H 1.08999 * 110.06402 * 92.04791 * 11 10 8 40 40 H 1.08997 * 109.47463 * 61.01471 * 13 12 11 41 41 H 1.08999 * 109.47347 * 181.01599 * 13 12 11 42 42 H 1.09000 * 109.46885 * 301.01412 * 13 12 11 43 43 H 1.08996 * 110.39355 * 207.14742 * 14 12 11 44 44 H 1.09000 * 110.38942 * 329.53545 * 14 12 11 45 45 H 0.97001 * 119.99724 * 180.02562 * 19 18 16 46 46 H 1.08999 * 110.38481 * 201.26362 * 24 15 14 47 47 H 1.08997 * 110.39088 * 78.88012 * 24 15 14 48 48 H 1.08998 * 109.46806 * 302.40415 * 26 25 24 49 49 H 1.09000 * 109.47305 * 62.41228 * 26 25 24 50 50 H 1.09000 * 109.46673 * 182.40779 * 26 25 24 51 51 H 1.08995 * 110.06411 * 267.90651 * 27 10 8 52 52 H 1.08998 * 110.06643 * 29.43204 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4266 1.4616 -0.1081 5 1 3.8861 0.4967 0.1057 6 6 3.7964 1.8994 -1.5268 7 6 3.3839 0.8114 -2.5201 8 6 3.9248 2.4852 0.8794 9 8 3.1344 3.1245 1.5409 10 7 5.2487 2.6861 1.0315 11 6 5.8928 3.6931 1.8908 12 6 7.2062 4.0833 1.1930 13 6 7.1050 5.4415 0.4957 14 6 8.3552 4.0441 2.2222 15 7 8.8396 2.6176 2.1518 16 6 9.2343 1.8165 3.1898 17 1 9.3336 0.7513 3.0422 18 6 9.5065 2.3735 4.4317 19 7 9.5633 3.6814 4.5683 20 14 9.7925 1.2669 5.9093 21 1 10.9580 0.3843 5.6486 22 1 10.0622 2.1012 7.1078 23 1 8.5851 0.4355 6.1460 24 6 8.7962 2.2814 0.7100 25 6 7.4956 2.9326 0.1946 26 6 7.6356 3.4366 -1.2433 27 6 6.3333 1.9374 0.3758 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.2773 2.8271 -1.7676 34 1 4.8729 2.0587 -1.5888 35 1 3.7053 1.0939 -3.5226 36 1 3.8525 -0.1323 -2.2407 37 1 2.2999 0.6973 -2.5047 38 1 5.2485 4.5665 1.9909 39 1 6.1018 3.2683 2.8726 40 1 6.8872 6.2135 1.2336 41 1 8.0499 5.6675 0.0015 42 1 6.3058 5.4110 -0.2449 43 1 9.1477 4.7343 1.9332 44 1 7.9824 4.2876 3.2171 45 1 9.7540 4.0706 5.4361 46 1 8.7599 1.2006 0.5731 47 1 9.6608 2.7014 0.1959 48 1 8.4584 4.1492 -1.3000 49 1 7.8376 2.5947 -1.9054 50 1 6.7102 3.9251 -1.5487 51 1 6.6456 1.1038 1.0046 52 1 6.0005 1.5701 -0.5950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755459817.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:56:31 Heat of formation + Delta-G solvation = -71.421629 kcal Electronic energy + Delta-G solvation = -30311.250010 eV Core-core repulsion = 26503.872870 eV Total energy + Delta-G solvation = -3807.377141 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -41.94827 -40.35111 -38.68519 -36.43637 -34.93589 -34.28968 -33.09389 -32.34399 -31.94752 -29.17720 -28.19954 -27.12411 -26.59714 -26.34934 -23.95031 -23.68178 -22.81526 -21.67848 -20.74320 -19.27049 -18.73432 -18.27506 -17.63474 -17.11554 -16.73643 -16.56417 -16.45975 -15.72300 -15.49827 -15.12820 -15.06189 -14.87549 -14.62676 -14.53557 -14.44320 -13.63580 -13.47185 -13.39808 -13.28705 -13.25095 -13.11656 -13.01253 -12.93670 -12.78507 -12.68291 -12.57298 -12.50664 -12.29516 -12.13824 -12.08673 -11.93544 -11.74511 -11.62113 -11.44151 -11.19604 -11.12798 -11.04203 -10.65713 -10.35670 -9.73089 -8.83645 -7.87279 -5.20420 1.44365 1.47044 1.47566 1.52547 1.71276 2.48977 2.80519 3.29838 3.33610 3.52425 3.60898 3.71309 3.79398 3.87630 3.96465 4.16562 4.16755 4.23920 4.29429 4.31509 4.40023 4.43969 4.46222 4.53532 4.60096 4.70674 4.79250 4.84823 4.89317 4.90499 4.94845 4.96490 4.98935 5.01686 5.07774 5.13692 5.16252 5.19742 5.25357 5.27021 5.34600 5.38570 5.42016 5.46475 5.51766 5.64175 5.78176 6.11588 6.19527 6.54087 7.01478 7.06264 7.72221 8.51513 9.25948 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013960 B = 0.003968 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.221925 B = 7055.395721 C = 7912.394335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.043 3.957 3 O -0.383 6.383 4 C 0.086 3.914 5 H 0.105 0.895 6 C -0.134 4.134 7 C -0.147 4.147 8 C 0.515 3.485 9 O -0.582 6.582 10 N -0.604 5.604 11 C 0.131 3.869 12 C -0.082 4.082 13 C -0.118 4.118 14 C 0.178 3.822 15 N -0.620 5.620 16 C -0.228 4.228 17 H 0.080 0.920 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.967 3.033 21 H -0.273 1.273 22 H -0.298 1.298 23 H -0.284 1.284 24 C 0.138 3.862 25 C -0.072 4.072 26 C -0.121 4.121 27 C 0.112 3.888 28 H 0.046 0.954 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.033 0.967 40 H 0.047 0.953 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.009 0.991 44 H 0.048 0.952 45 H 0.246 0.754 46 H 0.060 0.940 47 H 0.029 0.971 48 H 0.063 0.937 49 H 0.081 0.919 50 H 0.067 0.933 51 H 0.059 0.941 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 -6.768 -18.666 22.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.033 4.033 3 O -0.302 6.302 4 C 0.025 3.975 5 H 0.122 0.878 6 C -0.172 4.172 7 C -0.204 4.204 8 C 0.305 3.695 9 O -0.462 6.462 10 N -0.337 5.337 11 C 0.008 3.992 12 C -0.084 4.084 13 C -0.176 4.176 14 C 0.053 3.947 15 N -0.344 5.344 16 C -0.357 4.357 17 H 0.098 0.902 18 C -0.255 4.255 19 N -0.594 5.594 20 Si 0.796 3.204 21 H -0.199 1.199 22 H -0.225 1.225 23 H -0.211 1.211 24 C 0.012 3.988 25 C -0.075 4.075 26 C -0.178 4.178 27 C -0.009 4.009 28 H 0.065 0.935 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.027 0.973 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.086 0.914 51 H 0.078 0.922 52 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -11.457 -6.341 -18.072 22.318 hybrid contribution 0.593 -0.236 2.034 2.132 sum -10.864 -6.577 -16.038 20.458 Atomic orbital electron populations 1.21751 0.92702 1.03523 1.02547 1.22944 0.96693 0.82429 1.01254 1.88006 1.19152 1.28481 1.94547 1.21986 0.83493 0.97498 0.94565 0.87783 1.22046 1.02931 1.00902 0.91309 1.21790 1.01855 0.97839 0.98920 1.21145 0.80287 0.84534 0.83580 1.90664 1.55415 1.51198 1.48882 1.48553 1.04695 1.35611 1.44883 1.21854 0.93236 0.91089 0.92989 1.22329 0.93620 0.96505 0.95937 1.21648 1.02522 0.93611 0.99779 1.21820 0.91462 0.85286 0.96154 1.45749 1.75848 1.11227 1.01606 1.19277 1.37267 0.89999 0.89162 0.90216 1.25548 1.02225 0.96928 1.00837 1.70058 1.56046 1.10212 1.23101 0.85326 0.78051 0.77837 0.79184 1.19898 1.22453 1.21101 1.21874 0.94490 0.98156 0.84268 1.22349 0.94828 0.93831 0.96460 1.21690 1.02488 1.01915 0.91716 1.22549 0.85726 0.94140 0.98532 0.93467 0.91594 0.88584 0.90297 0.93698 0.91727 0.88530 0.90436 0.91239 0.92486 0.92161 0.94829 0.93428 0.91013 0.91224 0.97320 0.93363 0.94499 0.92206 0.95287 0.91845 0.90023 0.91385 0.92249 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.04 0.80 6.00 71.98 0.43 1.23 16 3 O -0.38 -10.37 9.21 -129.99 -1.20 -11.56 16 4 C 0.09 2.10 2.04 29.85 0.06 2.16 16 5 H 0.10 2.10 7.65 -2.39 -0.02 2.08 16 6 C -0.13 -2.39 5.40 30.59 0.17 -2.23 16 7 C -0.15 -1.76 8.84 71.98 0.64 -1.12 16 8 C 0.51 17.75 7.24 87.66 0.63 18.39 16 9 O -0.58 -25.81 16.77 15.95 0.27 -25.54 16 10 N -0.60 -20.03 3.31 -814.63 -2.70 -22.73 16 11 C 0.13 5.13 6.10 86.50 0.53 5.66 16 12 C -0.08 -2.86 1.06 -50.77 -0.05 -2.91 16 13 C -0.12 -3.38 7.47 71.98 0.54 -2.84 16 14 C 0.18 8.29 4.90 85.98 0.42 8.72 16 15 N -0.62 -29.78 3.43 -681.42 -2.34 -32.12 16 16 C -0.23 -12.27 10.36 84.03 0.87 -11.40 16 17 H 0.08 4.09 7.85 -2.91 -0.02 4.07 16 18 C -0.06 -3.46 5.42 84.86 0.46 -3.00 16 19 N -0.95 -56.38 10.82 21.65 0.23 -56.14 16 20 Si 0.97 45.68 29.56 68.60 2.03 47.71 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 23 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 24 C 0.14 4.94 6.09 86.52 0.53 5.46 16 25 C -0.07 -2.08 1.09 -50.66 -0.06 -2.13 16 26 C -0.12 -2.39 7.55 71.98 0.54 -1.85 16 27 C 0.11 3.04 5.75 86.61 0.50 3.54 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.05 6.43 -2.39 -0.02 1.03 16 32 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.48 5.27 -2.39 -0.01 1.47 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.07 0.65 8.14 -2.38 -0.02 0.64 16 37 H 0.06 0.74 6.87 -2.38 -0.02 0.73 16 38 H 0.06 2.40 7.65 -2.39 -0.02 2.38 16 39 H 0.03 1.59 7.48 -2.39 -0.02 1.57 16 40 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.88 7.16 -2.39 -0.02 1.86 16 42 H 0.07 1.73 7.10 -2.39 -0.02 1.71 16 43 H 0.01 0.43 7.97 -2.39 -0.02 0.41 16 44 H 0.05 2.64 6.08 -2.39 -0.01 2.63 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.06 1.99 7.66 -2.39 -0.02 1.97 16 47 H 0.03 1.04 7.96 -2.39 -0.02 1.02 16 48 H 0.06 1.29 7.17 -2.39 -0.02 1.28 16 49 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 50 H 0.07 1.21 7.09 -2.39 -0.02 1.19 16 51 H 0.06 1.84 7.47 -2.39 -0.02 1.82 16 52 H 0.12 2.14 4.68 -2.39 -0.01 2.13 16 Total: -1.00 -74.23 391.14 4.13 -70.10 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.89 Total: 14.26 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.95 Total: 16.02 kcal Atomic # 7 Polarization: -106.19 SS G_CDS: -4.80 Total: -110.99 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -0.93 Total: -37.11 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -74.23 4.13 -70.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755459817.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.320 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.84 seconds