Wall clock time and date at job start Tue Mar 31 2020 14:15:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42900 * 109.46749 * 2 1
4 4 C 1.52996 * 109.46840 * 119.99744 * 2 1 3
5 5 N 1.46501 * 109.47290 * 304.99975 * 4 2 1
6 6 C 1.34778 * 119.99472 * 180.02562 * 5 4 2
7 7 O 1.21584 * 120.00625 * 355.02985 * 6 5 4
8 8 N 1.34780 * 119.99335 * 175.03312 * 6 5 4
9 9 C 1.46501 * 119.99885 * 185.19508 * 8 6 5
10 10 C 1.52994 * 109.47191 * 184.67290 * 9 8 6
11 11 C 1.50704 * 115.55284 * 64.86376 * 10 9 8
12 12 H 1.07992 * 119.99755 * 266.84264 * 11 10 9
13 13 C 1.37884 * 119.99819 * 86.83851 * 11 10 9
14 14 N 1.31513 * 119.99691 * 179.21176 * 13 11 10
15 15 Si 1.86804 * 120.00114 * 359.22072 * 13 11 10
16 16 H 1.48493 * 109.47387 * 90.10646 * 15 13 11
17 17 H 1.48498 * 109.46610 * 210.10657 * 15 13 11
18 18 H 1.48502 * 109.46989 * 330.10538 * 15 13 11
19 19 C 1.53002 * 117.49933 * 279.18995 * 10 9 8
20 20 C 1.53009 * 117.49883 * 210.53107 * 10 9 8
21 21 C 1.53002 * 109.47272 * 240.00285 * 2 1 3
22 22 C 1.53002 * 109.46938 * 179.97438 * 21 2 1
23 23 C 1.53001 * 109.46762 * 179.97438 * 22 21 2
24 24 C 1.53003 * 109.47019 * 60.00031 * 23 22 21
25 25 C 1.52994 * 109.47098 * 299.99688 * 24 23 22
26 26 C 1.52999 * 109.47259 * 60.00437 * 25 24 23
27 27 H 1.09007 * 109.46771 * 60.00334 * 1 2 3
28 28 H 1.08995 * 109.47234 * 299.99893 * 1 2 3
29 29 H 1.08999 * 109.47100 * 179.97438 * 1 2 3
30 30 H 0.96698 * 114.00407 * 180.02562 * 3 2 1
31 31 H 1.08993 * 109.47224 * 65.00816 * 4 2 1
32 32 H 1.09005 * 109.46765 * 185.00168 * 4 2 1
33 33 H 0.96997 * 120.00257 * 0.02562 * 5 4 2
34 34 H 0.97001 * 120.00414 * 5.18960 * 8 6 5
35 35 H 1.09006 * 109.46642 * 304.67099 * 9 8 6
36 36 H 1.09002 * 109.47186 * 64.66648 * 9 8 6
37 37 H 0.97000 * 119.99693 * 180.02562 * 14 13 11
38 38 H 1.09002 * 117.49625 * 0.02562 * 19 10 9
39 39 H 1.09001 * 117.49842 * 145.02100 * 19 10 9
40 40 H 1.08991 * 117.50168 * 214.98068 * 20 10 9
41 41 H 1.08999 * 117.49424 * 359.97438 * 20 10 9
42 42 H 1.08998 * 109.46959 * 299.99462 * 21 2 1
43 43 H 1.08998 * 109.46914 * 299.99561 * 22 21 2
44 44 H 1.08997 * 109.46865 * 60.00090 * 22 21 2
45 45 H 1.08998 * 109.47331 * 299.99652 * 23 22 21
46 46 H 1.08997 * 109.46795 * 179.97438 * 23 22 21
47 47 H 1.09003 * 109.46546 * 179.97438 * 24 23 22
48 48 H 1.08999 * 109.46892 * 59.99856 * 24 23 22
49 49 H 1.08999 * 109.47386 * 299.99866 * 25 24 23
50 50 H 1.09000 * 109.47275 * 180.02562 * 25 24 23
51 51 H 1.08997 * 109.47123 * 180.02562 * 26 25 24
52 52 H 1.08999 * 109.47388 * 59.99429 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 1.4558 -0.1035 2.4424
6 6 1.7648 -0.5768 3.6659
7 8 2.4554 -1.5712 3.7767
8 7 1.3080 0.0525 4.7668
9 6 1.7356 -0.3926 6.0955
10 6 0.9884 0.4056 7.1657
11 6 -0.5027 0.1926 7.2128
12 1 -1.1597 0.8502 6.6630
13 6 -1.0282 -0.8419 7.9577
14 7 -2.3303 -1.0184 8.0113
15 14 0.1095 -1.9927 8.8910
16 1 0.3410 -1.4593 10.2573
17 1 -0.5138 -3.3373 8.9835
18 1 1.4058 -2.0962 8.1738
19 6 1.5132 1.8035 7.4994
20 6 1.7086 0.6550 8.4924
21 6 2.0401 -0.7212 -1.2493
22 6 3.5701 -0.7206 -1.2495
23 6 4.0801 -1.4423 -2.4985
24 6 3.5696 -0.7219 -3.7480
25 6 2.0396 -0.7225 -3.7477
26 6 1.5296 -0.0008 -2.4988
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 -1.0277 -0.0005
30 1 2.9703 1.4238 -0.0004
31 1 1.7517 -1.7714 1.2056
32 1 3.1263 -0.6442 1.2952
33 1 0.8467 0.6459 2.3518
34 1 0.6961 0.8001 4.6795
35 1 1.5135 -1.4534 6.2121
36 1 2.8081 -0.2318 6.2048
37 1 -2.6999 -1.7459 8.5356
38 1 2.3906 2.1546 6.9562
39 1 0.7800 2.5690 7.7533
40 1 1.1039 0.6654 9.3991
41 1 2.7145 0.2500 8.6028
42 1 1.6769 -1.7489 -1.2493
43 1 3.9330 0.3072 -1.2498
44 1 3.9337 -1.2342 -0.3596
45 1 3.7172 -2.4701 -2.4979
46 1 5.1701 -1.4415 -2.4989
47 1 3.9333 -1.2359 -4.6378
48 1 3.9325 0.3059 -3.7486
49 1 1.6767 -1.7503 -3.7471
50 1 1.6759 -0.2097 -4.6381
51 1 0.4396 -0.0016 -2.4984
52 1 1.8925 1.0270 -2.4994
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000568829145.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:15:17
Heat of formation + Delta-G solvation = -82.942676 kcal
Electronic energy + Delta-G solvation = -28578.000859 eV
Core-core repulsion = 24770.124128 eV
Total energy + Delta-G solvation = -3807.876731 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.44 seconds
Orbital eigenvalues (eV)
-40.40025 -39.21464 -37.25173 -36.78878 -34.11123 -33.34702 -32.27443 -32.09708
-31.19337 -29.31834 -27.35462 -26.06117 -24.86728 -23.17450 -22.61197 -21.72277
-20.55973 -20.37902 -19.89189 -19.25294 -17.89577 -17.22664 -16.41713 -15.66565
-15.55288 -15.50014 -15.04264 -14.73401 -14.63329 -14.46272 -14.09882 -13.99836
-13.66456 -13.40464 -13.13115 -12.85093 -12.73871 -12.61715 -12.53480 -12.38972
-12.27630 -11.97146 -11.75648 -11.55672 -11.45251 -11.18134 -11.13691 -10.83766
-10.75421 -10.73066 -10.49296 -10.17471 -10.15692 -9.93894 -9.76805 -9.56091
-9.16442 -8.86446 -8.62026 -8.57020 -8.10183 -6.13681 -4.17911 3.12385
3.30874 3.41019 3.47359 3.72296 4.01567 4.26185 4.30423 4.38400
4.42440 4.62556 4.67475 4.74198 4.88571 4.98274 5.00399 5.06128
5.16105 5.18374 5.21140 5.25657 5.32688 5.48476 5.55574 5.64972
5.66335 5.70548 5.73566 5.75825 5.80102 5.85093 5.88296 5.91985
5.99695 6.04324 6.09051 6.12121 6.18530 6.28305 6.43593 6.51909
6.71665 6.75383 7.03053 7.10961 7.23088 7.41756 7.47957 7.70180
8.43231 8.58970 8.86318 9.13571 9.49634 10.97715
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.023426 B = 0.002470 C = 0.002440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1194.969344 B =11334.096235 C =11472.579723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.126 3.874
3 O -0.552 6.552
4 C 0.117 3.883
5 N -0.746 5.746
6 C 0.700 3.300
7 O -0.606 6.606
8 N -0.719 5.719
9 C 0.175 3.825
10 C -0.015 4.015
11 C -0.488 4.488
12 H 0.077 0.923
13 C 0.079 3.921
14 N -0.896 5.896
15 Si 0.879 3.121
16 H -0.278 1.278
17 H -0.294 1.294
18 H -0.256 1.256
19 C -0.178 4.178
20 C -0.193 4.193
21 C -0.108 4.108
22 C -0.124 4.124
23 C -0.117 4.117
24 C -0.120 4.120
25 C -0.120 4.120
26 C -0.110 4.110
27 H 0.068 0.932
28 H 0.066 0.934
29 H 0.072 0.928
30 H 0.374 0.626
31 H 0.070 0.930
32 H 0.065 0.935
33 H 0.398 0.602
34 H 0.399 0.601
35 H 0.064 0.936
36 H 0.038 0.962
37 H 0.265 0.735
38 H 0.073 0.927
39 H 0.087 0.913
40 H 0.090 0.910
41 H 0.074 0.926
42 H 0.081 0.919
43 H 0.063 0.937
44 H 0.069 0.931
45 H 0.062 0.938
46 H 0.061 0.939
47 H 0.058 0.942
48 H 0.061 0.939
49 H 0.060 0.940
50 H 0.060 0.940
51 H 0.065 0.935
52 H 0.069 0.931
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.201 2.941 -22.308 24.705
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.085 3.915
3 O -0.359 6.359
4 C -0.008 4.008
5 N -0.404 5.404
6 C 0.399 3.601
7 O -0.486 6.486
8 N -0.372 5.372
9 C 0.051 3.949
10 C -0.017 4.017
11 C -0.526 4.526
12 H 0.095 0.905
13 C -0.124 4.124
14 N -0.533 5.533
15 Si 0.707 3.293
16 H -0.204 1.204
17 H -0.221 1.221
18 H -0.181 1.181
19 C -0.216 4.216
20 C -0.231 4.231
21 C -0.127 4.127
22 C -0.162 4.162
23 C -0.155 4.155
24 C -0.157 4.157
25 C -0.158 4.158
26 C -0.147 4.147
27 H 0.087 0.913
28 H 0.085 0.915
29 H 0.091 0.909
30 H 0.222 0.778
31 H 0.089 0.911
32 H 0.083 0.917
33 H 0.233 0.767
34 H 0.233 0.767
35 H 0.083 0.917
36 H 0.056 0.944
37 H 0.075 0.925
38 H 0.091 0.909
39 H 0.106 0.894
40 H 0.109 0.891
41 H 0.093 0.907
42 H 0.099 0.901
43 H 0.082 0.918
44 H 0.087 0.913
45 H 0.081 0.919
46 H 0.080 0.920
47 H 0.077 0.923
48 H 0.079 0.921
49 H 0.079 0.921
50 H 0.079 0.921
51 H 0.084 0.916
52 H 0.088 0.912
Dipole moment (debyes) X Y Z Total
from point charges 10.071 2.043 -22.096 24.369
hybrid contribution 0.507 -0.227 0.587 0.808
sum 10.578 1.816 -21.509 24.038
Atomic orbital electron populations
1.21808 0.92126 1.02845 1.03168 1.21461 0.95342 0.82387 0.92304
1.86551 1.26711 1.25665 1.96926 1.21803 0.97934 0.97519 0.83568
1.44999 1.52629 1.38530 1.04233 1.16014 0.80653 0.82887 0.80513
1.90863 1.44832 1.26738 1.86184 1.44970 1.50703 1.36718 1.04794
1.21000 0.95147 0.99025 0.79750 1.19636 0.95648 0.94217 0.92175
1.20174 0.86894 1.14782 1.30701 0.90461 1.24968 0.94799 0.96834
0.95761 1.69886 1.11064 1.31527 1.40829 0.86851 0.81997 0.79872
0.80561 1.20427 1.22092 1.18055 1.22838 1.01804 0.92780 1.04156
1.22953 1.00242 1.04591 0.95302 1.21748 0.95869 1.00389 0.94678
1.21702 0.94873 1.00984 0.98604 1.21497 1.00181 0.99473 0.94346
1.21542 0.95822 1.00698 0.97685 1.21551 0.95610 1.00751 0.97891
1.21537 1.00505 0.99681 0.92989 0.91327 0.91547 0.90868 0.77795
0.91144 0.91697 0.76703 0.76702 0.91740 0.94370 0.92522 0.90896
0.89442 0.89149 0.90744 0.90105 0.91791 0.91252 0.91912 0.92012
0.92300 0.92059 0.92123 0.92142 0.91630 0.91246
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.32 8.26 37.16 0.31 -1.01 16
2 C 0.13 1.13 0.50 -90.62 -0.05 1.09 16
3 O -0.55 -5.09 12.21 -35.23 -0.43 -5.52 16
4 C 0.12 1.39 4.32 -4.04 -0.02 1.37 16
5 N -0.75 -10.60 5.19 -65.23 -0.34 -10.94 16
6 C 0.70 13.26 8.55 -86.91 -0.74 12.52 16
7 O -0.61 -13.73 16.33 5.29 0.09 -13.64 16
8 N -0.72 -13.85 5.46 -65.22 -0.36 -14.20 16
9 C 0.18 3.79 5.16 -4.04 -0.02 3.77 16
10 C -0.02 -0.34 0.82 -155.66 -0.13 -0.47 16
11 C -0.49 -12.98 9.29 -34.44 -0.32 -13.30 16
12 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16
13 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16
14 N -0.90 -26.79 13.96 55.43 0.77 -26.01 16
15 Si 0.88 21.75 24.84 -169.99 -4.22 17.53 16
16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
17 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16
18 H -0.26 -6.13 5.79 56.52 0.33 -5.80 16
19 C -0.18 -3.44 9.96 -26.69 -0.27 -3.71 16
20 C -0.19 -3.99 7.60 -26.69 -0.20 -4.19 16
21 C -0.11 -0.81 1.61 -90.62 -0.15 -0.96 16
22 C -0.12 -0.87 4.55 -26.73 -0.12 -0.99 16
23 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16
24 C -0.12 -0.74 5.92 -26.73 -0.16 -0.90 16
25 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16
26 C -0.11 -0.78 4.71 -26.73 -0.13 -0.90 16
27 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16
28 H 0.07 0.68 6.57 -51.93 -0.34 0.33 16
29 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16
30 H 0.37 2.63 7.33 45.56 0.33 2.97 16
31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
32 H 0.06 0.77 6.71 -51.93 -0.35 0.43 16
33 H 0.40 5.02 7.01 -40.82 -0.29 4.74 16
34 H 0.40 7.09 8.46 -40.82 -0.35 6.74 16
35 H 0.06 1.57 6.65 -51.93 -0.35 1.23 16
36 H 0.04 0.79 8.09 -51.93 -0.42 0.37 16
37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16
38 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16
39 H 0.09 1.69 8.14 -51.93 -0.42 1.26 16
40 H 0.09 1.96 7.24 -51.93 -0.38 1.58 16
41 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16
42 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16
43 H 0.06 0.41 6.78 -51.93 -0.35 0.05 16
44 H 0.07 0.54 6.54 -51.93 -0.34 0.20 16
45 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
46 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
47 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16
48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16
49 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
50 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16
51 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16
52 H 0.07 0.54 7.68 -51.93 -0.40 0.14 16
LS Contribution 392.57 15.07 5.92 5.92
Total: -1.00 -31.93 392.57 -9.57 -41.50
By element:
Atomic # 1 Polarization: 21.39 SS G_CDS: -8.59 Total: 12.79 kcal
Atomic # 6 Polarization: -5.02 SS G_CDS: -2.40 Total: -7.42 kcal
Atomic # 7 Polarization: -51.24 SS G_CDS: 0.08 Total: -51.16 kcal
Atomic # 8 Polarization: -18.81 SS G_CDS: -0.34 Total: -19.16 kcal
Atomic # 14 Polarization: 21.75 SS G_CDS: -4.22 Total: 17.53 kcal
Total LS contribution 5.92 Total: 5.92 kcal
Total: -31.93 -9.57 -41.50 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000568829145.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -41.442 kcal
(2) G-P(sol) polarization free energy of solvation -31.934 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.377 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal
(6) G-S(sol) free energy of system = (1) + (5) -82.943 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.45 seconds