Wall clock time and date at job start Tue Mar 31 2020 14:15:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53006 * 1
3 3 O 1.42900 * 109.46749 * 2 1
4 4 C 1.52996 * 109.46840 * 119.99744 * 2 1 3
5 5 N 1.46501 * 109.47290 * 304.99975 * 4 2 1
6 6 C 1.34778 * 119.99472 * 180.02562 * 5 4 2
7 7 O 1.21584 * 120.00625 * 355.02985 * 6 5 4
8 8 N 1.34780 * 119.99335 * 175.03312 * 6 5 4
9 9 C 1.46501 * 119.99885 * 185.19508 * 8 6 5
10 10 C 1.52994 * 109.47191 * 184.67290 * 9 8 6
11 11 C 1.50704 * 115.55284 * 64.86376 * 10 9 8
12 12 H 1.07992 * 119.99755 * 266.84264 * 11 10 9
13 13 C 1.37884 * 119.99819 * 86.83851 * 11 10 9
14 14 N 1.31513 * 119.99691 * 179.21176 * 13 11 10
15 15 Si 1.86804 * 120.00114 * 359.22072 * 13 11 10
16 16 H 1.48493 * 109.47387 * 90.10646 * 15 13 11
17 17 H 1.48498 * 109.46610 * 210.10657 * 15 13 11
18 18 H 1.48502 * 109.46989 * 330.10538 * 15 13 11
19 19 C 1.53002 * 117.49933 * 279.18995 * 10 9 8
20 20 C 1.53009 * 117.49883 * 210.53107 * 10 9 8
21 21 C 1.53002 * 109.47272 * 240.00285 * 2 1 3
22 22 C 1.53002 * 109.46938 * 179.97438 * 21 2 1
23 23 C 1.53001 * 109.46762 * 179.97438 * 22 21 2
24 24 C 1.53003 * 109.47019 * 60.00031 * 23 22 21
25 25 C 1.52994 * 109.47098 * 299.99688 * 24 23 22
26 26 C 1.52999 * 109.47259 * 60.00437 * 25 24 23
27 27 H 1.09007 * 109.46771 * 60.00334 * 1 2 3
28 28 H 1.08995 * 109.47234 * 299.99893 * 1 2 3
29 29 H 1.08999 * 109.47100 * 179.97438 * 1 2 3
30 30 H 0.96698 * 114.00407 * 180.02562 * 3 2 1
31 31 H 1.08993 * 109.47224 * 65.00816 * 4 2 1
32 32 H 1.09005 * 109.46765 * 185.00168 * 4 2 1
33 33 H 0.96997 * 120.00257 * 0.02562 * 5 4 2
34 34 H 0.97001 * 120.00414 * 5.18960 * 8 6 5
35 35 H 1.09006 * 109.46642 * 304.67099 * 9 8 6
36 36 H 1.09002 * 109.47186 * 64.66648 * 9 8 6
37 37 H 0.97000 * 119.99693 * 180.02562 * 14 13 11
38 38 H 1.09002 * 117.49625 * 0.02562 * 19 10 9
39 39 H 1.09001 * 117.49842 * 145.02100 * 19 10 9
40 40 H 1.08991 * 117.50168 * 214.98068 * 20 10 9
41 41 H 1.08999 * 117.49424 * 359.97438 * 20 10 9
42 42 H 1.08998 * 109.46959 * 299.99462 * 21 2 1
43 43 H 1.08998 * 109.46914 * 299.99561 * 22 21 2
44 44 H 1.08997 * 109.46865 * 60.00090 * 22 21 2
45 45 H 1.08998 * 109.47331 * 299.99652 * 23 22 21
46 46 H 1.08997 * 109.46795 * 179.97438 * 23 22 21
47 47 H 1.09003 * 109.46546 * 179.97438 * 24 23 22
48 48 H 1.08999 * 109.46892 * 59.99856 * 24 23 22
49 49 H 1.08999 * 109.47386 * 299.99866 * 25 24 23
50 50 H 1.09000 * 109.47275 * 180.02562 * 25 24 23
51 51 H 1.08997 * 109.47123 * 180.02562 * 26 25 24
52 52 H 1.08999 * 109.47388 * 59.99429 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 1.4558 -0.1035 2.4424
6 6 1.7648 -0.5768 3.6659
7 8 2.4554 -1.5712 3.7767
8 7 1.3080 0.0525 4.7668
9 6 1.7356 -0.3926 6.0955
10 6 0.9884 0.4056 7.1657
11 6 -0.5027 0.1926 7.2128
12 1 -1.1597 0.8502 6.6630
13 6 -1.0282 -0.8419 7.9577
14 7 -2.3303 -1.0184 8.0113
15 14 0.1095 -1.9927 8.8910
16 1 0.3410 -1.4593 10.2573
17 1 -0.5138 -3.3373 8.9835
18 1 1.4058 -2.0962 8.1738
19 6 1.5132 1.8035 7.4994
20 6 1.7086 0.6550 8.4924
21 6 2.0401 -0.7212 -1.2493
22 6 3.5701 -0.7206 -1.2495
23 6 4.0801 -1.4423 -2.4985
24 6 3.5696 -0.7219 -3.7480
25 6 2.0396 -0.7225 -3.7477
26 6 1.5296 -0.0008 -2.4988
27 1 -0.3633 0.5138 -0.8901
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 -1.0277 -0.0005
30 1 2.9703 1.4238 -0.0004
31 1 1.7517 -1.7714 1.2056
32 1 3.1263 -0.6442 1.2952
33 1 0.8467 0.6459 2.3518
34 1 0.6961 0.8001 4.6795
35 1 1.5135 -1.4534 6.2121
36 1 2.8081 -0.2318 6.2048
37 1 -2.6999 -1.7459 8.5356
38 1 2.3906 2.1546 6.9562
39 1 0.7800 2.5690 7.7533
40 1 1.1039 0.6654 9.3991
41 1 2.7145 0.2500 8.6028
42 1 1.6769 -1.7489 -1.2493
43 1 3.9330 0.3072 -1.2498
44 1 3.9337 -1.2342 -0.3596
45 1 3.7172 -2.4701 -2.4979
46 1 5.1701 -1.4415 -2.4989
47 1 3.9333 -1.2359 -4.6378
48 1 3.9325 0.3059 -3.7486
49 1 1.6767 -1.7503 -3.7471
50 1 1.6759 -0.2097 -4.6381
51 1 0.4396 -0.0016 -2.4984
52 1 1.8925 1.0270 -2.4994
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000568829145.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:15:15
Heat of formation + Delta-G solvation = -105.651949 kcal
Electronic energy + Delta-G solvation = -28578.985607 eV
Core-core repulsion = 24770.124128 eV
Total energy + Delta-G solvation = -3808.861479 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-41.35818 -40.45596 -38.81001 -37.62051 -35.27655 -34.94399 -34.20293 -33.05877
-31.75236 -30.05237 -28.69324 -27.69633 -26.45963 -23.89091 -23.34695 -23.19056
-21.78390 -21.25718 -21.07060 -20.52348 -19.34000 -18.47946 -17.88060 -16.99990
-16.80535 -16.66281 -16.26877 -15.85267 -15.71512 -15.57328 -15.08844 -14.88545
-14.76089 -14.73725 -14.60190 -14.38102 -14.01142 -13.76850 -13.42142 -13.32066
-13.14359 -13.08816 -13.00984 -12.63145 -12.50986 -12.18081 -12.15746 -12.00887
-11.97469 -11.78706 -11.61039 -11.48192 -11.37138 -11.29822 -10.97965 -10.76573
-10.65929 -10.56255 -10.36770 -10.24973 -9.60326 -8.29812 -6.35654 1.33578
1.39728 1.50193 1.80040 2.21047 2.36859 3.05269 3.11232 3.30728
3.54174 3.56563 3.66997 3.78573 3.92672 4.04977 4.09437 4.28217
4.37732 4.38926 4.42360 4.43649 4.54394 4.59524 4.62815 4.65781
4.67679 4.74539 4.79939 4.85279 4.88177 4.88632 4.94317 5.08565
5.11223 5.14759 5.25671 5.27115 5.31676 5.32817 5.35154 5.42121
5.49164 5.50387 5.55767 5.62913 5.65864 5.70937 6.09663 6.28801
6.72497 6.78841 7.17685 7.34676 7.64949 8.84911
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.023426 B = 0.002470 C = 0.002440
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1194.969344 B =11334.096235 C =11472.579723
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.140 3.860
3 O -0.558 6.558
4 C 0.115 3.885
5 N -0.729 5.729
6 C 0.696 3.304
7 O -0.644 6.644
8 N -0.719 5.719
9 C 0.185 3.815
10 C -0.041 4.041
11 C -0.476 4.476
12 H 0.044 0.956
13 C 0.024 3.976
14 N -0.945 5.945
15 Si 0.930 3.070
16 H -0.264 1.264
17 H -0.304 1.304
18 H -0.242 1.242
19 C -0.150 4.150
20 C -0.192 4.192
21 C -0.102 4.102
22 C -0.123 4.123
23 C -0.117 4.117
24 C -0.118 4.118
25 C -0.120 4.120
26 C -0.105 4.105
27 H 0.079 0.921
28 H 0.055 0.945
29 H 0.073 0.927
30 H 0.384 0.616
31 H 0.058 0.942
32 H 0.067 0.933
33 H 0.407 0.593
34 H 0.406 0.594
35 H 0.032 0.968
36 H 0.054 0.946
37 H 0.264 0.736
38 H 0.104 0.896
39 H 0.085 0.915
40 H 0.078 0.922
41 H 0.099 0.901
42 H 0.077 0.923
43 H 0.073 0.927
44 H 0.060 0.940
45 H 0.058 0.942
46 H 0.066 0.934
47 H 0.064 0.936
48 H 0.063 0.937
49 H 0.059 0.941
50 H 0.066 0.934
51 H 0.064 0.936
52 H 0.066 0.934
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.279 3.933 -23.353 26.676
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C 0.099 3.901
3 O -0.366 6.366
4 C -0.010 4.010
5 N -0.386 5.386
6 C 0.396 3.604
7 O -0.527 6.527
8 N -0.372 5.372
9 C 0.060 3.940
10 C -0.042 4.042
11 C -0.514 4.514
12 H 0.062 0.938
13 C -0.174 4.174
14 N -0.585 5.585
15 Si 0.756 3.244
16 H -0.189 1.189
17 H -0.232 1.232
18 H -0.166 1.166
19 C -0.187 4.187
20 C -0.229 4.229
21 C -0.121 4.121
22 C -0.160 4.160
23 C -0.155 4.155
24 C -0.156 4.156
25 C -0.157 4.157
26 C -0.143 4.143
27 H 0.097 0.903
28 H 0.074 0.926
29 H 0.092 0.908
30 H 0.234 0.766
31 H 0.077 0.923
32 H 0.085 0.915
33 H 0.244 0.756
34 H 0.241 0.759
35 H 0.050 0.950
36 H 0.073 0.927
37 H 0.073 0.927
38 H 0.122 0.878
39 H 0.104 0.896
40 H 0.097 0.903
41 H 0.118 0.882
42 H 0.096 0.904
43 H 0.091 0.909
44 H 0.078 0.922
45 H 0.077 0.923
46 H 0.084 0.916
47 H 0.083 0.917
48 H 0.081 0.919
49 H 0.077 0.923
50 H 0.085 0.915
51 H 0.083 0.917
52 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 12.160 3.085 -23.177 26.354
hybrid contribution -0.168 -0.459 0.823 0.957
sum 11.992 2.626 -22.354 25.503
Atomic orbital electron populations
1.21849 0.92319 1.02969 1.03177 1.21305 0.95094 0.82310 0.91438
1.86538 1.27827 1.25397 1.96844 1.22005 0.98094 0.97204 0.83683
1.44920 1.51978 1.38246 1.03429 1.16188 0.80324 0.82461 0.81460
1.90833 1.46601 1.28421 1.86861 1.44885 1.50963 1.36935 1.04408
1.20731 0.95852 0.96961 0.80488 1.19452 0.93236 0.97448 0.94062
1.20360 0.89189 1.13148 1.28696 0.93754 1.25721 0.95809 0.98646
0.97195 1.70017 1.12947 1.32734 1.42810 0.86028 0.80746 0.77526
0.80142 1.18918 1.23171 1.16577 1.22871 1.02232 0.91137 1.02476
1.23025 1.00907 1.05074 0.93938 1.21686 0.96312 1.00012 0.94081
1.21690 0.94325 1.01522 0.98503 1.21497 1.00475 0.99227 0.94290
1.21532 0.95574 1.00806 0.97654 1.21546 0.95812 1.00636 0.97716
1.21495 1.00427 0.99440 0.92924 0.90265 0.92579 0.90765 0.76588
0.92321 0.91454 0.75571 0.75929 0.94986 0.92744 0.92734 0.87774
0.89600 0.90301 0.88236 0.90445 0.90853 0.92179 0.92329 0.91564
0.91717 0.91864 0.92260 0.91529 0.91719 0.91522
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.55 8.26 71.98 0.59 -1.96 16
2 C 0.14 2.33 0.50 -10.79 -0.01 2.33 16
3 O -0.56 -9.21 12.21 -148.98 -1.82 -11.03 16
4 C 0.11 2.63 4.32 86.38 0.37 3.00 16
5 N -0.73 -20.10 5.19 -478.54 -2.49 -22.59 16
6 C 0.70 25.96 8.55 179.05 1.53 27.49 16
7 O -0.64 -29.03 16.33 -3.98 -0.07 -29.09 16
8 N -0.72 -27.07 5.46 -478.53 -2.61 -29.68 16
9 C 0.18 7.75 5.16 86.38 0.45 8.19 16
10 C -0.04 -1.75 0.82 -52.92 -0.04 -1.80 16
11 C -0.48 -25.53 9.29 25.60 0.24 -25.30 16
12 H 0.04 2.61 8.06 -2.91 -0.02 2.58 16
13 C 0.02 1.37 5.47 84.66 0.46 1.84 16
14 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16
15 Si 0.93 44.86 24.84 68.60 1.70 46.57 16
16 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16
17 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16
18 H -0.24 -11.06 5.79 99.48 0.58 -10.49 16
19 C -0.15 -5.32 9.96 30.62 0.30 -5.01 16
20 C -0.19 -7.37 7.60 30.62 0.23 -7.13 16
21 C -0.10 -1.39 1.61 -10.79 -0.02 -1.41 16
22 C -0.12 -1.54 4.55 30.60 0.14 -1.40 16
23 C -0.12 -1.36 5.92 30.60 0.18 -1.18 16
24 C -0.12 -1.24 5.92 30.59 0.18 -1.06 16
25 C -0.12 -1.32 5.92 30.59 0.18 -1.14 16
26 C -0.11 -1.32 4.71 30.60 0.14 -1.17 16
27 H 0.08 1.22 6.43 -2.38 -0.02 1.21 16
28 H 0.06 1.09 6.57 -2.39 -0.02 1.07 16
29 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16
30 H 0.38 4.57 7.33 -74.06 -0.54 4.03 16
31 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16
32 H 0.07 1.54 6.71 -2.38 -0.02 1.52 16
33 H 0.41 9.84 7.01 -92.71 -0.65 9.19 16
34 H 0.41 14.07 8.46 -92.71 -0.78 13.29 16
35 H 0.03 1.54 6.65 -2.38 -0.02 1.53 16
36 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16
37 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16
38 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16
39 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16
40 H 0.08 3.23 7.24 -2.39 -0.02 3.21 16
41 H 0.10 3.35 8.14 -2.39 -0.02 3.33 16
42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16
43 H 0.07 0.78 6.78 -2.39 -0.02 0.76 16
44 H 0.06 0.87 6.54 -2.39 -0.02 0.86 16
45 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16
46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16
47 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
48 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16
49 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
50 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16
51 H 0.06 0.83 6.43 -2.39 -0.02 0.81 16
52 H 0.07 0.89 7.68 -2.39 -0.02 0.87 16
Total: -1.00 -69.36 392.57 -1.21 -70.58
By element:
Atomic # 1 Polarization: 39.99 SS G_CDS: -1.18 Total: 38.81 kcal
Atomic # 6 Polarization: -10.65 SS G_CDS: 4.94 Total: -5.71 kcal
Atomic # 7 Polarization: -105.33 SS G_CDS: -4.80 Total: -110.13 kcal
Atomic # 8 Polarization: -38.23 SS G_CDS: -1.88 Total: -40.12 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 1.70 Total: 46.57 kcal
Total: -69.36 -1.21 -70.58 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000568829145.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -35.075 kcal
(2) G-P(sol) polarization free energy of solvation -69.362 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.437 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.215 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.576 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.652 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds